RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 NRIP1P48552 1158 aa23.08■■□□□ 1.29
CLN3-219ENST00000565778 RARRES1P49788 294 aa23.08■■□□□ 1.29
CLN3-219ENST00000565778 ERVFC1P60507 584 aa23.08■■□□□ 1.29
CLN3-219ENST00000565778 TFDP1Q14186 410 aa23.08■■□□□ 1.29
CLN3-219ENST00000565778 CATSPER3Q86XQ3 398 aa23.08■■□□□ 1.29
CLN3-219ENST00000565778 LPPQ93052 612 aa23.08■■□□□ 1.29
CLN3-219ENST00000565778 TLE6Q9H808 572 aa23.08■■□□□ 1.29
CLN3-219ENST00000565778 TUFT1Q9NNX1 390 aa23.08■■□□□ 1.29
CLN3-219ENST00000565778 XPNPEP1Q9NQW7 623 aa23.08■■□□□ 1.29
CLN3-219ENST00000565778 AGPAT5Q9NUQ2 364 aa23.08■■□□□ 1.29
CLN3-219ENST00000565778 SPG21Q9NZD8 308 aa23.08■■□□□ 1.29
CLN3-219ENST00000565778 FAM50BQ9Y247 325 aa23.08■■□□□ 1.29
CLN3-219ENST00000565778 PCDHGC5Q9Y5F6 944 aa23.08■■□□□ 1.29
CLN3-219ENST00000565778 FNDC1Q4ZHG4 1894 aaPredicted RBP23.08■■□□□ 1.29
CLN3-219ENST00000565778 MYO7AQ13402 2215 aa23.07■■□□□ 1.28
CLN3-219ENST00000565778 ZNF623O75123 536 aa23.07■■□□□ 1.28
CLN3-219ENST00000565778 PBX3P40426 434 aa23.07■■□□□ 1.28
CLN3-219ENST00000565778 TRAPPC10P48553 1259 aa23.07■■□□□ 1.28
CLN3-219ENST00000565778 RAB27AP51159 221 aa23.07■■□□□ 1.28
CLN3-219ENST00000565778 PLCB3Q01970 1234 aa23.07■■□□□ 1.28
CLN3-219ENST00000565778 DLX2Q07687 328 aaPredicted RBP23.07■■□□□ 1.28
CLN3-219ENST00000565778 NCBP1Q09161 790 aaKnown RBP23.07■■□□□ 1.28
CLN3-219ENST00000565778 CLUL1Q15846 466 aa23.07■■□□□ 1.28
CLN3-219ENST00000565778 GLB1LQ6UWU2 654 aa23.07■■□□□ 1.28
CLN3-219ENST00000565778 FAM178BQ8IXR5 827 aa23.07■■□□□ 1.28
CLN3-219ENST00000565778 ERMNQ8TAM6 284 aa23.07■■□□□ 1.28
CLN3-219ENST00000565778 MRPS27Q92552 414 aaKnown RBP23.07■■□□□ 1.28
CLN3-219ENST00000565778 PGBD4Q96DM1 585 aa23.07■■□□□ 1.28
CLN3-219ENST00000565778 MRPL9Q9BYD2 267 aaKnown RBP23.07■■□□□ 1.28
CLN3-219ENST00000565778 KIF3AQ9Y496 699 aa23.07■■□□□ 1.28
CLN3-219ENST00000565778 PCDHB2Q9Y5E7 798 aa23.07■■□□□ 1.28
CLN3-219ENST00000565778 PER2O15055 1255 aa23.06■■□□□ 1.28
CLN3-219ENST00000565778 MED24O75448 989 aa23.06■■□□□ 1.28
CLN3-219ENST00000565778 ERLIN2O94905 339 aa23.06■■□□□ 1.28
CLN3-219ENST00000565778 U2AF2P26368 475 aaKnown RBP eCLIP23.06■■□□□ 1.28
CLN3-219ENST00000565778 PPM1AP35813 382 aa23.06■■□□□ 1.28
CLN3-219ENST00000565778 ALDH7A1P49419 539 aaKnown RBP23.06■■□□□ 1.28
CLN3-219ENST00000565778 NDUFV1P49821 464 aa23.06■■□□□ 1.28
CLN3-219ENST00000565778 PDE12Q6L8Q7 609 aaKnown RBP23.06■■□□□ 1.28
CLN3-219ENST00000565778 NACC1Q96RE7 527 aa23.06■■□□□ 1.28
CLN3-219ENST00000565778 POLR3CQ9BUI4 534 aaPredicted RBP23.06■■□□□ 1.28
CLN3-219ENST00000565778 LZTS1Q9Y250 596 aa23.06■■□□□ 1.28
CLN3-219ENST00000565778 INPP5FQ9Y2H2 1132 aa23.06■■□□□ 1.28
CLN3-219ENST00000565778 INO80B-WBP1J3KQ70 363 aa23.05■■□□□ 1.28
CLN3-219ENST00000565778 USO1O60763 962 aaKnown RBP23.05■■□□□ 1.28
CLN3-219ENST00000565778 HOXA11P31270 313 aaPredicted RBP23.05■■□□□ 1.28
CLN3-219ENST00000565778 ARL2P36404 184 aa23.05■■□□□ 1.28
CLN3-219ENST00000565778 BCAR1P56945 870 aa23.05■■□□□ 1.28
CLN3-219ENST00000565778 PTENP60484 403 aa23.05■■□□□ 1.28
CLN3-219ENST00000565778 POU5F1BQ06416 359 aa23.05■■□□□ 1.28
CLN3-219ENST00000565778 NBR1Q14596 966 aa23.05■■□□□ 1.28
CLN3-219ENST00000565778 MAEAQ7L5Y9 396 aa23.05■■□□□ 1.28
CLN3-219ENST00000565778 EFHBQ8N7U6 833 aa23.05■■□□□ 1.28
CLN3-219ENST00000565778 RSPH1Q8WYR4 309 aa23.05■■□□□ 1.28
CLN3-219ENST00000565778 TMX3Q96JJ7 454 aa23.05■■□□□ 1.28
CLN3-219ENST00000565778 KIAA1671Q9BY89 1806 aa23.05■■□□□ 1.28
CLN3-219ENST00000565778 MEIS3P2A8K0S8 358 aa23.04■■□□□ 1.28
CLN3-219ENST00000565778 NT5C1B-RDH14C9J2C7 533 aa23.04■■□□□ 1.28
CLN3-219ENST00000565778 OFD1O75665 1012 aa23.04■■□□□ 1.28
CLN3-219ENST00000565778 RPA1P27694 616 aa23.04■■□□□ 1.28
CLN3-219ENST00000565778 RNASELQ05823 741 aaKnown RBP23.04■■□□□ 1.28
CLN3-219ENST00000565778 NOMO2Q5JPE7 1267 aa23.04■■□□□ 1.28
CLN3-219ENST00000565778 MCTP1Q6DN14 999 aa23.04■■□□□ 1.28
CLN3-219ENST00000565778 TMC7Q7Z402 723 aa23.04■■□□□ 1.28
CLN3-219ENST00000565778 ASAP3Q8TDY4 903 aa23.04■■□□□ 1.28
CLN3-219ENST00000565778 ENTPD7Q9NQZ7 604 aa23.04■■□□□ 1.28
CLN3-219ENST00000565778 DBR1Q9UK59 544 aaKnown RBP23.04■■□□□ 1.28
CLN3-219ENST00000565778 GLRA2P23416 452 aa23.03■■□□□ 1.28
CLN3-219ENST00000565778 AXLP30530 894 aa23.03■■□□□ 1.28
CLN3-219ENST00000565778 SSTR3P32745 418 aaPredicted RBP23.03■■□□□ 1.28
CLN3-219ENST00000565778 CAPSQ13938 189 aa23.03■■□□□ 1.28
CLN3-219ENST00000565778 PCBP1Q15365 356 aaKnown RBP eCLIP23.03■■□□□ 1.28
CLN3-219ENST00000565778 PLPP4Q5VZY2 271 aa23.03■■□□□ 1.28
CLN3-219ENST00000565778 MRPL10Q7Z7H8 261 aaKnown RBP23.03■■□□□ 1.28
CLN3-219ENST00000565778 GJD3Q8N144 294 aa23.03■■□□□ 1.28
CLN3-219ENST00000565778 C4orf32Q8N8J7 132 aa23.03■■□□□ 1.28
CLN3-219ENST00000565778 TCF25Q9BQ70 676 aa23.03■■□□□ 1.28
CLN3-219ENST00000565778 POLR3FQ9H1D9 316 aaPredicted RBP23.03■■□□□ 1.28
CLN3-219ENST00000565778 CD320Q9NPF0 282 aa23.03■■□□□ 1.28
CLN3-219ENST00000565778 CD207Q9UJ71 328 aa23.03■■□□□ 1.28
CLN3-219ENST00000565778 BRWD1Q9NSI6 2320 aa23.03■■□□□ 1.28
CLN3-219ENST00000565778 FSCN2O14926 492 aa23.02■■□□□ 1.28
CLN3-219ENST00000565778 ZC3H11AO75152 810 aaKnown RBP eCLIP23.02■■□□□ 1.28
CLN3-219ENST00000565778 TBX10O75333 385 aa23.02■■□□□ 1.28
CLN3-219ENST00000565778 MCM2P49736 904 aa23.02■■□□□ 1.28
CLN3-219ENST00000565778 TOB1P50616 345 aaPredicted RBP23.02■■□□□ 1.28
CLN3-219ENST00000565778 PTGDRQ13258 359 aa23.02■■□□□ 1.28
CLN3-219ENST00000565778 UBXN11Q5T124 520 aa23.02■■□□□ 1.28
CLN3-219ENST00000565778 POTEGQ6S5H5 508 aa23.02■■□□□ 1.28
CLN3-219ENST00000565778 SLC39A11Q8N1S5 342 aa23.02■■□□□ 1.28
CLN3-219ENST00000565778 URGCPQ8TCY9 931 aa23.02■■□□□ 1.28
CLN3-219ENST00000565778 CPB2Q96IY4 423 aa23.02■■□□□ 1.28
CLN3-219ENST00000565778 GBP3Q9H0R5 595 aa23.02■■□□□ 1.28
CLN3-219ENST00000565778 NGRNQ9NPE2 291 aaKnown RBP23.02■■□□□ 1.28
CLN3-219ENST00000565778 LRWD1Q9UFC0 647 aa23.02■■□□□ 1.28
CLN3-219ENST00000565778 PCDHB6Q9Y5E3 794 aa23.02■■□□□ 1.28
CLN3-219ENST00000565778 ARHGEF35A5YM69 484 aa23.01■■□□□ 1.27
CLN3-219ENST00000565778 MBTPS2O43462 519 aa23.01■■□□□ 1.27
CLN3-219ENST00000565778 TSPAN1O60635 241 aa23.01■■□□□ 1.27
CLN3-219ENST00000565778 CD2BP2O95400 341 aaKnown RBP23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms