RNA–Protein interactions for RNA: ENST00000560861.1

SNX1-212, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-212ENST00000560861 IFT74Q96LB3 600 aa12.4□□□□□ -0.42
SNX1-212ENST00000560861 TUBGCP2Q9BSJ2 902 aa12.4□□□□□ -0.42
SNX1-212ENST00000560861 MKNK1Q9BUB5 465 aa12.4□□□□□ -0.42
SNX1-212ENST00000560861 CCDC113Q9H0I3 377 aa12.4□□□□□ -0.42
SNX1-212ENST00000560861 TMEM134Q9H6X4 195 aa12.4□□□□□ -0.42
SNX1-212ENST00000560861 MBLAC1A4D2B0 266 aaPredicted RBP12.39□□□□□ -0.43
SNX1-212ENST00000560861 ANKRD63C9JTQ0 380 aa12.39□□□□□ -0.43
SNX1-212ENST00000560861 CLIC2O15247 247 aa12.39□□□□□ -0.43
SNX1-212ENST00000560861 AKAP3O75969 853 aa12.39□□□□□ -0.43
SNX1-212ENST00000560861 KLRC1P26715 233 aa12.39□□□□□ -0.43
SNX1-212ENST00000560861 CST5P28325 142 aaPredicted RBP12.39□□□□□ -0.43
SNX1-212ENST00000560861 ADSSP30520 456 aa12.39□□□□□ -0.43
SNX1-212ENST00000560861 ABCD1P33897 745 aa12.39□□□□□ -0.43
SNX1-212ENST00000560861 PSEN2P49810 448 aa12.39□□□□□ -0.43
SNX1-212ENST00000560861 PURAQ00577 322 aaKnown RBP12.39□□□□□ -0.43
SNX1-212ENST00000560861 LAMTOR4Q0VGL1 99 aa12.39□□□□□ -0.43
SNX1-212ENST00000560861 MFSD10Q14728 455 aa12.39□□□□□ -0.43
SNX1-212ENST00000560861 GRIK4Q16099 956 aa12.39□□□□□ -0.43
SNX1-212ENST00000560861 MAN2A1Q16706 1144 aa12.39□□□□□ -0.43
SNX1-212ENST00000560861 PTPN21Q16825 1174 aa12.39□□□□□ -0.43
SNX1-212ENST00000560861 CCSAPQ6IQ19 270 aaPredicted RBP12.39□□□□□ -0.43
SNX1-212ENST00000560861 EFCAB12Q6NXP0 572 aa12.39□□□□□ -0.43
SNX1-212ENST00000560861 MTHFD1LQ6UB35 978 aa12.39□□□□□ -0.43
SNX1-212ENST00000560861 HS2ST1Q7LGA3 356 aa12.39□□□□□ -0.43
SNX1-212ENST00000560861 FRMD5Q7Z6J6 570 aa12.39□□□□□ -0.43
SNX1-212ENST00000560861 SPC24Q8NBT2 197 aa12.39□□□□□ -0.43
SNX1-212ENST00000560861 KLHDC9Q8NEP7 349 aa12.39□□□□□ -0.43
SNX1-212ENST00000560861 ANKRD20A12PQ8NF67 263 aa12.39□□□□□ -0.43
SNX1-212ENST00000560861 PSPC1Q8WXF1 523 aaKnown RBP12.39□□□□□ -0.43
SNX1-212ENST00000560861 VPS16Q9H269 839 aa12.39□□□□□ -0.43
SNX1-212ENST00000560861 SUCLA2Q9P2R7 463 aaPredicted RBP12.39□□□□□ -0.43
SNX1-212ENST00000560861 IMPACTQ9P2X3 320 aa12.39□□□□□ -0.43
SNX1-212ENST00000560861 MAGEC2Q9UBF1 373 aaPredicted RBP12.39□□□□□ -0.43
SNX1-212ENST00000560861 STYXL1Q9Y6J8 313 aa12.39□□□□□ -0.43
SNX1-212ENST00000560861 ITIH6Q6UXX5 1313 aa12.38□□□□□ -0.43
SNX1-212ENST00000560861 PHLPP2Q6ZVD8 1323 aa12.38□□□□□ -0.43
SNX1-212ENST00000560861 A0A1W2PQC6 194 aa12.38□□□□□ -0.43
SNX1-212ENST00000560861 RRN3P2A6NIE6 340 aa12.38□□□□□ -0.43
SNX1-212ENST00000560861 N4BP3O15049 544 aa12.38□□□□□ -0.43
SNX1-212ENST00000560861 ASAP2O43150 1006 aa12.38□□□□□ -0.43
SNX1-212ENST00000560861 KPNA6O60684 536 aa12.38□□□□□ -0.43
SNX1-212ENST00000560861 TPM3P06753 285 aa12.38□□□□□ -0.43
SNX1-212ENST00000560861 SMIM10L2AP0DMW4 78 aa12.38□□□□□ -0.43
SNX1-212ENST00000560861 SMIM10L2BP0DMW5 78 aa12.38□□□□□ -0.43
SNX1-212ENST00000560861 RPL13P26373 211 aaKnown RBP12.38□□□□□ -0.43
SNX1-212ENST00000560861 MTIF2P46199 727 aaKnown RBP12.38□□□□□ -0.43
SNX1-212ENST00000560861 CLCN3P51790 818 aa12.38□□□□□ -0.43
SNX1-212ENST00000560861 POU5F1BQ06416 359 aa12.38□□□□□ -0.43
SNX1-212ENST00000560861 MXD4Q14582 209 aaPredicted RBP12.38□□□□□ -0.43
SNX1-212ENST00000560861 KIAA0753Q2KHM9 967 aa12.38□□□□□ -0.43
SNX1-212ENST00000560861 TMC6Q7Z403 805 aa12.38□□□□□ -0.43
SNX1-212ENST00000560861 LMBR1Q8WVP7 490 aa12.38□□□□□ -0.43
SNX1-212ENST00000560861 CBWD1Q9BRT8 395 aa12.38□□□□□ -0.43
SNX1-212ENST00000560861 NFKBIZQ9BYH8 718 aa12.38□□□□□ -0.43
SNX1-212ENST00000560861 SUGCTQ9HAC7 445 aa12.38□□□□□ -0.43
SNX1-212ENST00000560861 EXOC7Q9UPT5 735 aa12.38□□□□□ -0.43
SNX1-212ENST00000560861 NRCAMQ92823 1304 aa12.37□□□□□ -0.43
SNX1-212ENST00000560861 LRRIQ4A6NIV6 560 aa12.37□□□□□ -0.43
SNX1-212ENST00000560861 ABLIM1O14639 778 aa12.37□□□□□ -0.43
SNX1-212ENST00000560861 MAPK13O15264 365 aa12.37□□□□□ -0.43
SNX1-212ENST00000560861 MSCO60682 206 aa12.37□□□□□ -0.43
SNX1-212ENST00000560861 MYL3P08590 195 aa12.37□□□□□ -0.43
SNX1-212ENST00000560861 RARBP10826 455 aa12.37□□□□□ -0.43
SNX1-212ENST00000560861 DNM2P50570 870 aa12.37□□□□□ -0.43
SNX1-212ENST00000560861 PTENP60484 403 aa12.37□□□□□ -0.43
SNX1-212ENST00000560861 IGBP1P78318 339 aa12.37□□□□□ -0.43
SNX1-212ENST00000560861 FILIP1LQ4L180 1135 aa12.37□□□□□ -0.43
SNX1-212ENST00000560861 VWA3BQ502W6 1294 aa12.37□□□□□ -0.43
SNX1-212ENST00000560861 BRDTQ58F21 947 aaPredicted RBP12.37□□□□□ -0.43
SNX1-212ENST00000560861 SPECC1LQ69YQ0 1117 aa12.37□□□□□ -0.43
SNX1-212ENST00000560861 CCDC186Q7Z3E2 898 aa12.37□□□□□ -0.43
SNX1-212ENST00000560861 KIAA0319LQ8IZA0 1049 aa12.37□□□□□ -0.43
SNX1-212ENST00000560861 SYCP3Q8IZU3 236 aa12.37□□□□□ -0.43
SNX1-212ENST00000560861 SLAIN1Q8ND83 568 aa12.37□□□□□ -0.43
SNX1-212ENST00000560861 DEPTORQ8TB45 409 aa12.37□□□□□ -0.43
SNX1-212ENST00000560861 FBXL18Q96ME1 805 aa12.37□□□□□ -0.43
SNX1-212ENST00000560861 ERGIC2Q96RQ1 377 aa12.37□□□□□ -0.43
SNX1-212ENST00000560861 KCNF1Q9H3M0 494 aa12.37□□□□□ -0.43
SNX1-212ENST00000560861 SETD4Q9NVD3 440 aa12.37□□□□□ -0.43
SNX1-212ENST00000560861 TSKSQ9UJT2 592 aa12.37□□□□□ -0.43
SNX1-212ENST00000560861 PGK1P00558 417 aa12.36□□□□□ -0.43
SNX1-212ENST00000560861 GJB1P08034 283 aa12.36□□□□□ -0.43
SNX1-212ENST00000560861 C6orf222P0C671 652 aaPredicted RBP12.36□□□□□ -0.43
SNX1-212ENST00000560861 GARTP22102 1010 aa12.36□□□□□ -0.43
SNX1-212ENST00000560861 CNGA1P29973 690 aa12.36□□□□□ -0.43
SNX1-212ENST00000560861 PSMC2P35998 433 aaKnown RBP12.36□□□□□ -0.43
SNX1-212ENST00000560861 EFNA5P52803 228 aa12.36□□□□□ -0.43
SNX1-212ENST00000560861 ARID5BQ14865 1188 aa12.36□□□□□ -0.43
SNX1-212ENST00000560861 ARHGEF6Q15052 776 aa12.36□□□□□ -0.43
SNX1-212ENST00000560861 CCDC40Q4G0X9 1142 aa12.36□□□□□ -0.43
SNX1-212ENST00000560861 DPY19L2P1Q6NXN4 242 aa12.36□□□□□ -0.43
SNX1-212ENST00000560861 ARMCX5Q6P1M9 558 aa12.36□□□□□ -0.43
SNX1-212ENST00000560861 RETREG2Q8NC44 543 aa12.36□□□□□ -0.43
SNX1-212ENST00000560861 ZSWIM2Q8NEG5 633 aa12.36□□□□□ -0.43
SNX1-212ENST00000560861 RAET1EQ8TD07 263 aa12.36□□□□□ -0.43
SNX1-212ENST00000560861 SLC35C1Q96A29 364 aa12.36□□□□□ -0.43
SNX1-212ENST00000560861 MTG1Q9BT17 334 aaPredicted RBP12.36□□□□□ -0.43
SNX1-212ENST00000560861 NOC4LQ9BVI4 516 aaKnown RBP12.36□□□□□ -0.43
SNX1-212ENST00000560861 KATNAL1Q9BW62 490 aa12.36□□□□□ -0.43
SNX1-212ENST00000560861 HAPLN2Q9GZV7 340 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms