RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	ST18	O60284	1047 aa		15.69	■□□□□ 0.1
TPM1-223	ENST00000560445	JAK2	O60674	1132 aa		15.69	■□□□□ 0.1
TPM1-223	ENST00000560445	CSPG5	O95196	566 aa		15.69	■□□□□ 0.1
TPM1-223	ENST00000560445	LARGE1	O95461	756 aa		15.69	■□□□□ 0.1
TPM1-223	ENST00000560445	TXK	P42681	527 aa		15.69	■□□□□ 0.1
TPM1-223	ENST00000560445	NPEPPS	P55786	919 aa		15.69	■□□□□ 0.1
TPM1-223	ENST00000560445	CYP4A11	Q02928	519 aa		15.69	■□□□□ 0.1
TPM1-223	ENST00000560445	RNASEL	Q05823	741 aa	Known RBP	15.69	■□□□□ 0.1
TPM1-223	ENST00000560445	POU5F1B	Q06416	359 aa		15.69	■□□□□ 0.1
TPM1-223	ENST00000560445	SPIRE1	Q08AE8	756 aa		15.69	■□□□□ 0.1
TPM1-223	ENST00000560445	LAMTOR4	Q0VGL1	99 aa		15.69	■□□□□ 0.1
TPM1-223	ENST00000560445	COASY	Q13057	564 aa		15.69	■□□□□ 0.1
TPM1-223	ENST00000560445	DRP2	Q13474	957 aa		15.69	■□□□□ 0.1
TPM1-223	ENST00000560445	CAMK1	Q14012	370 aa		15.69	■□□□□ 0.1
TPM1-223	ENST00000560445	GIT2	Q14161	759 aa		15.69	■□□□□ 0.1
TPM1-223	ENST00000560445	SMC1A	Q14683	1233 aa	Known RBP	15.69	■□□□□ 0.1
TPM1-223	ENST00000560445	HELQ	Q8TDG4	1101 aa		15.69	■□□□□ 0.1
TPM1-223	ENST00000560445	DYDC2	Q96IM9	177 aa		15.69	■□□□□ 0.1
TPM1-223	ENST00000560445	ZNF668	Q96K58	619 aa	Predicted RBP	15.69	■□□□□ 0.1
TPM1-223	ENST00000560445	EIF2AK1	Q9BQI3	630 aa	Known RBP	15.69	■□□□□ 0.1
TPM1-223	ENST00000560445	RAB34	Q9BZG1	259 aa		15.69	■□□□□ 0.1
TPM1-223	ENST00000560445	PLXNA4	Q9HCM2	1894 aa		15.68	■□□□□ 0.1
TPM1-223	ENST00000560445	MBTPS2	O43462	519 aa		15.68	■□□□□ 0.1
TPM1-223	ENST00000560445	SRGAP2C	P0DJJ0	459 aa		15.68	■□□□□ 0.1
TPM1-223	ENST00000560445	DNAJB1	P25685	340 aa		15.68	■□□□□ 0.1
TPM1-223	ENST00000560445	ZP2	Q05996	745 aa		15.68	■□□□□ 0.1
TPM1-223	ENST00000560445	CTTN	Q14247	550 aa	Known RBP	15.68	■□□□□ 0.1
TPM1-223	ENST00000560445	NOMO2	Q5JPE7	1267 aa		15.68	■□□□□ 0.1
TPM1-223	ENST00000560445	HAUS3	Q68CZ6	603 aa		15.68	■□□□□ 0.1
TPM1-223	ENST00000560445	FERMT3	Q86UX7	667 aa		15.68	■□□□□ 0.1
TPM1-223	ENST00000560445	CCDC83	Q8IWF9	413 aa		15.68	■□□□□ 0.1
TPM1-223	ENST00000560445	RNF149	Q8NC42	400 aa		15.68	■□□□□ 0.1
TPM1-223	ENST00000560445	MCPH1	Q8NEM0	835 aa		15.68	■□□□□ 0.1
TPM1-223	ENST00000560445	TCF25	Q9BQ70	676 aa		15.68	■□□□□ 0.1
TPM1-223	ENST00000560445	SH2D3A	Q9BRG2	576 aa		15.68	■□□□□ 0.1
TPM1-223	ENST00000560445	TUFT1	Q9NNX1	390 aa		15.68	■□□□□ 0.1
TPM1-223	ENST00000560445	RGL1	Q9NZL6	768 aa		15.68	■□□□□ 0.1
TPM1-223	ENST00000560445	HCN4	Q9Y3Q4	1203 aa		15.68	■□□□□ 0.1
TPM1-223	ENST00000560445	ARID2	Q68CP9	1835 aa		15.68	■□□□□ 0.1
TPM1-223	ENST00000560445	PI4K2B	G5E9Z4	385 aa		15.67	■□□□□ 0.1
TPM1-223	ENST00000560445	FSCN2	O14926	492 aa		15.67	■□□□□ 0.1
TPM1-223	ENST00000560445	TBX10	O75333	385 aa		15.67	■□□□□ 0.1
TPM1-223	ENST00000560445	SLITRK3	O94933	977 aa		15.67	■□□□□ 0.1
TPM1-223	ENST00000560445	EYA4	O95677	639 aa		15.67	■□□□□ 0.1
TPM1-223	ENST00000560445	HOXB8	P17481	243 aa	Predicted RBP	15.67	■□□□□ 0.1
TPM1-223	ENST00000560445	MUT	P22033	750 aa		15.67	■□□□□ 0.1
TPM1-223	ENST00000560445	FGFR4	P22455	802 aa		15.67	■□□□□ 0.1
TPM1-223	ENST00000560445	LTBR	P36941	435 aa		15.67	■□□□□ 0.1
TPM1-223	ENST00000560445	DUSP6	Q16828	381 aa		15.67	■□□□□ 0.1
TPM1-223	ENST00000560445	EARS2	Q5JPH6	523 aa	Known RBP	15.67	■□□□□ 0.1
TPM1-223	ENST00000560445	CLLU1OS	Q5K130	101 aa		15.67	■□□□□ 0.1
TPM1-223	ENST00000560445	NOTUM	Q6P988	496 aa		15.67	■□□□□ 0.1
TPM1-223	ENST00000560445	TMC7	Q7Z402	723 aa		15.67	■□□□□ 0.1
TPM1-223	ENST00000560445	SMRP1	Q8NCR6	262 aa		15.67	■□□□□ 0.1
TPM1-223	ENST00000560445	TMEM143	Q96AN5	459 aa		15.67	■□□□□ 0.1
TPM1-223	ENST00000560445	FAM193B	Q96PV7	902 aa	Predicted RBP	15.67	■□□□□ 0.1
TPM1-223	ENST00000560445	NACC1	Q96RE7	527 aa		15.67	■□□□□ 0.1
TPM1-223	ENST00000560445	HSD17B14	Q9BPX1	270 aa		15.67	■□□□□ 0.1
TPM1-223	ENST00000560445	NFKBIZ	Q9BYH8	718 aa		15.67	■□□□□ 0.1
TPM1-223	ENST00000560445	IFT122	Q9HBG6	1241 aa		15.67	■□□□□ 0.1
TPM1-223	ENST00000560445	FAM205C	A6NFA0	338 aa		15.66	■□□□□ 0.1
TPM1-223	ENST00000560445	DCX	O43602	365 aa		15.66	■□□□□ 0.1
TPM1-223	ENST00000560445	GPR37L1	O60883	481 aa		15.66	■□□□□ 0.1
TPM1-223	ENST00000560445	NR1I2	O75469	434 aa		15.66	■□□□□ 0.1
TPM1-223	ENST00000560445	SEC24B	O95487	1268 aa		15.66	■□□□□ 0.1
TPM1-223	ENST00000560445	OR52Z1	P0C646	297 aa		15.66	■□□□□ 0.1
TPM1-223	ENST00000560445	COL9A1	P20849	921 aa		15.66	■□□□□ 0.1
TPM1-223	ENST00000560445	MCM7	P33993	719 aa		15.66	■□□□□ 0.1
TPM1-223	ENST00000560445	IRS1	P35568	1242 aa		15.66	■□□□□ 0.1
TPM1-223	ENST00000560445	RABEP1	Q15276	862 aa		15.66	■□□□□ 0.1
TPM1-223	ENST00000560445	TPRN	Q4KMQ1	711 aa		15.66	■□□□□ 0.1
TPM1-223	ENST00000560445	PLPP4	Q5VZY2	271 aa		15.66	■□□□□ 0.1
TPM1-223	ENST00000560445	RBM23	Q86U06	439 aa	Known RBP	15.66	■□□□□ 0.1
TPM1-223	ENST00000560445	IFNLR1	Q8IU57	520 aa	Predicted RBP	15.66	■□□□□ 0.1
TPM1-223	ENST00000560445	SLC39A11	Q8N1S5	342 aa		15.66	■□□□□ 0.1
TPM1-223	ENST00000560445	FBXO18	Q8NFZ0	1043 aa		15.66	■□□□□ 0.1
TPM1-223	ENST00000560445	CASP10	Q92851	521 aa		15.66	■□□□□ 0.1
TPM1-223	ENST00000560445	MSLNL	Q96KJ4	702 aa		15.66	■□□□□ 0.1
TPM1-223	ENST00000560445	MTMR9	Q96QG7	549 aa		15.66	■□□□□ 0.1
TPM1-223	ENST00000560445	TRIM6	Q9C030	488 aa	Predicted RBP	15.66	■□□□□ 0.1
TPM1-223	ENST00000560445	RNF19A	Q9NV58	838 aa		15.66	■□□□□ 0.1
TPM1-223	ENST00000560445	ARIH1	Q9Y4X5	557 aa	Predicted RBP	15.66	■□□□□ 0.1
TPM1-223	ENST00000560445	PCDHB2	Q9Y5E7	798 aa		15.66	■□□□□ 0.1
TPM1-223	ENST00000560445	ZMYM2	Q9UBW7	1377 aa		15.65	■□□□□ 0.1
TPM1-223	ENST00000560445	INO80B-WBP1	J3KQ70	363 aa		15.65	■□□□□ 0.1
TPM1-223	ENST00000560445	ZC3H11A	O75152	810 aa	Known RBP eCLIP	15.65	■□□□□ 0.1
TPM1-223	ENST00000560445	CSDE1	O75534	798 aa	Known RBP	15.65	■□□□□ 0.1
TPM1-223	ENST00000560445	ATF7	P17544	494 aa	Predicted RBP	15.65	■□□□□ 0.1
TPM1-223	ENST00000560445	FOSB	P53539	338 aa		15.65	■□□□□ 0.1
TPM1-223	ENST00000560445	BCAR1	P56945	870 aa		15.65	■□□□□ 0.1
TPM1-223	ENST00000560445	CLUL1	Q15846	466 aa		15.65	■□□□□ 0.1
TPM1-223	ENST00000560445	ELMSAN1	Q6PJG2	1045 aa		15.65	■□□□□ 0.1
TPM1-223	ENST00000560445	TMEM184A	Q6ZMB5	413 aa		15.65	■□□□□ 0.1
TPM1-223	ENST00000560445	ADGRD2	Q7Z7M1	963 aa		15.65	■□□□□ 0.1
TPM1-223	ENST00000560445	NOSTRIN	Q8IVI9	506 aa		15.65	■□□□□ 0.1
TPM1-223	ENST00000560445	KSR1	Q8IVT5	923 aa		15.65	■□□□□ 0.1
TPM1-223	ENST00000560445	TMEM175	Q9BSA9	504 aa		15.65	■□□□□ 0.1
TPM1-223	ENST00000560445	POLR3C	Q9BUI4	534 aa	Predicted RBP	15.65	■□□□□ 0.1
TPM1-223	ENST00000560445	RSAD1	Q9HA92	442 aa		15.65	■□□□□ 0.1
TPM1-223	ENST00000560445	WRAP73	Q9P2S5	460 aa	Predicted RBP	15.65	■□□□□ 0.1

Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms