RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 FAM187BQ17R55 369 aa14.37□□□□□ -0.11
NEDD8-208ENST00000560427 NAALADL2Q58DX5 795 aa14.37□□□□□ -0.11
NEDD8-208ENST00000560427 PPP4R3CPQ6ZMV5 832 aa14.37□□□□□ -0.11
NEDD8-208ENST00000560427 RTN4RL1Q86UN2 441 aaPredicted RBP14.37□□□□□ -0.11
NEDD8-208ENST00000560427 DAW1Q8N136 415 aa14.37□□□□□ -0.11
NEDD8-208ENST00000560427 IQUBQ8NA54 791 aa14.37□□□□□ -0.11
NEDD8-208ENST00000560427 SPIRE2Q8WWL2 714 aa14.37□□□□□ -0.11
NEDD8-208ENST00000560427 BSNDQ8WZ55 320 aa14.37□□□□□ -0.11
NEDD8-208ENST00000560427 KCNN1Q92952 543 aa14.37□□□□□ -0.11
NEDD8-208ENST00000560427 RAD9AQ99638 391 aa14.37□□□□□ -0.11
NEDD8-208ENST00000560427 ZBED2Q9BTP6 218 aa14.37□□□□□ -0.11
NEDD8-208ENST00000560427 LRRC27Q9C0I9 530 aa14.37□□□□□ -0.11
NEDD8-208ENST00000560427 TNMDQ9H2S6 317 aa14.37□□□□□ -0.11
NEDD8-208ENST00000560427 ELAC1Q9H777 363 aaKnown RBP14.37□□□□□ -0.11
NEDD8-208ENST00000560427 PRMT7Q9NVM4 692 aaPredicted RBP14.37□□□□□ -0.11
NEDD8-208ENST00000560427 CHMP5Q9NZZ3 219 aa14.37□□□□□ -0.11
NEDD8-208ENST00000560427 LARSQ9P2J5 1176 aaKnown RBP14.37□□□□□ -0.11
NEDD8-208ENST00000560427 PIN4Q9Y237 131 aaKnown RBP14.37□□□□□ -0.11
NEDD8-208ENST00000560427 INSL6Q9Y581 213 aa14.37□□□□□ -0.11
NEDD8-208ENST00000560427 A0A1W2PQ27 194 aa14.36□□□□□ -0.11
NEDD8-208ENST00000560427 A0A1W2PQ64 194 aa14.36□□□□□ -0.11
NEDD8-208ENST00000560427 A0A1W2PQD8 194 aa14.36□□□□□ -0.11
NEDD8-208ENST00000560427 GRXCR1A8MXD5 290 aa14.36□□□□□ -0.11
NEDD8-208ENST00000560427 H0YCG3 227 aa14.36□□□□□ -0.11
NEDD8-208ENST00000560427 MGEA5O60502 916 aa14.36□□□□□ -0.11
NEDD8-208ENST00000560427 KRT18P05783 430 aaKnown RBP14.36□□□□□ -0.11
NEDD8-208ENST00000560427 PLS3P13797 630 aa14.36□□□□□ -0.11
NEDD8-208ENST00000560427 ABCD1P33897 745 aa14.36□□□□□ -0.11
NEDD8-208ENST00000560427 FAM189BP81408 668 aa14.36□□□□□ -0.11
NEDD8-208ENST00000560427 HTRA4P83105 476 aaPredicted RBP14.36□□□□□ -0.11
NEDD8-208ENST00000560427 MCM6Q14566 821 aa14.36□□□□□ -0.11
NEDD8-208ENST00000560427 MAPK6Q16659 721 aa14.36□□□□□ -0.11
NEDD8-208ENST00000560427 ARSHQ5FYA8 562 aa14.36□□□□□ -0.11
NEDD8-208ENST00000560427 SV2BQ7L1I2 683 aa14.36□□□□□ -0.11
NEDD8-208ENST00000560427 CRIPAKQ8N1N5 446 aa14.36□□□□□ -0.11
NEDD8-208ENST00000560427 SLC17A8Q8NDX2 589 aa14.36□□□□□ -0.11
NEDD8-208ENST00000560427 SP7Q8TDD2 431 aaPredicted RBP14.36□□□□□ -0.11
NEDD8-208ENST00000560427 LRRC15Q8TF66 581 aa14.36□□□□□ -0.11
NEDD8-208ENST00000560427 TIFAQ96CG3 184 aa14.36□□□□□ -0.11
NEDD8-208ENST00000560427 NTPCRQ9BSD7 190 aaKnown RBP14.36□□□□□ -0.11
NEDD8-208ENST00000560427 FZD8Q9H461 694 aa14.36□□□□□ -0.11
NEDD8-208ENST00000560427 MINDY3Q9H8M7 445 aa14.36□□□□□ -0.11
NEDD8-208ENST00000560427 TMEM161AQ9NX61 479 aa14.36□□□□□ -0.11
NEDD8-208ENST00000560427 RBM19Q9Y4C8 960 aaKnown RBP14.36□□□□□ -0.11
NEDD8-208ENST00000560427 A0A087X0B3 334 aa14.35□□□□□ -0.11
NEDD8-208ENST00000560427 A0A0U1RQF3 1178 aa14.35□□□□□ -0.11
NEDD8-208ENST00000560427 HOXA2O43364 376 aa14.35□□□□□ -0.11
NEDD8-208ENST00000560427 TSPAN1O60635 241 aa14.35□□□□□ -0.11
NEDD8-208ENST00000560427 TBCAO75347 108 aaKnown RBP14.35□□□□□ -0.11
NEDD8-208ENST00000560427 CSDE1O75534 798 aaKnown RBP14.35□□□□□ -0.11
NEDD8-208ENST00000560427 EOMESO95936 686 aa14.35□□□□□ -0.11
NEDD8-208ENST00000560427 FGFR4P22455 802 aa14.35□□□□□ -0.11
NEDD8-208ENST00000560427 CMA1P23946 247 aa14.35□□□□□ -0.11
NEDD8-208ENST00000560427 NPTX2P47972 431 aa14.35□□□□□ -0.11
NEDD8-208ENST00000560427 ZNF131P52739 623 aa14.35□□□□□ -0.11
NEDD8-208ENST00000560427 SMTNP53814 917 aa14.35□□□□□ -0.11
NEDD8-208ENST00000560427 PEX3P56589 373 aa14.35□□□□□ -0.11
NEDD8-208ENST00000560427 E2F4Q16254 413 aa14.35□□□□□ -0.11
NEDD8-208ENST00000560427 AMHR2Q16671 573 aa14.35□□□□□ -0.11
NEDD8-208ENST00000560427 CSPP1Q1MSJ5 1256 aa14.35□□□□□ -0.11
NEDD8-208ENST00000560427 ZNF697Q5TEC3 545 aa14.35□□□□□ -0.11
NEDD8-208ENST00000560427 TWF2Q6IBS0 349 aaKnown RBP14.35□□□□□ -0.11
NEDD8-208ENST00000560427 NOTUMQ6P988 496 aa14.35□□□□□ -0.11
NEDD8-208ENST00000560427 LRCH3Q96II8 777 aa14.35□□□□□ -0.11
NEDD8-208ENST00000560427 YME1L1Q96TA2 773 aa14.35□□□□□ -0.11
NEDD8-208ENST00000560427 REEP2Q9BRK0 252 aa14.35□□□□□ -0.11
NEDD8-208ENST00000560427 CCDC113Q9H0I3 377 aa14.35□□□□□ -0.11
NEDD8-208ENST00000560427 TMEM134Q9H6X4 195 aa14.35□□□□□ -0.11
NEDD8-208ENST00000560427 PARVGQ9HBI0 331 aa14.35□□□□□ -0.11
NEDD8-208ENST00000560427 KMT5AQ9NQR1 393 aa14.35□□□□□ -0.11
NEDD8-208ENST00000560427 ARHGAP28Q9P2N2 729 aa14.35□□□□□ -0.11
NEDD8-208ENST00000560427 USP25Q9UHP3 1055 aa14.35□□□□□ -0.11
NEDD8-208ENST00000560427 LRFN2Q9ULH4 789 aa14.35□□□□□ -0.11
NEDD8-208ENST00000560427 PCDHB7Q9Y5E2 793 aa14.35□□□□□ -0.11
NEDD8-208ENST00000560427 CNTNAP2Q9UHC6 1331 aa14.35□□□□□ -0.11
NEDD8-208ENST00000560427 PTPRSQ13332 1948 aa14.35□□□□□ -0.11
NEDD8-208ENST00000560427 FAM237AA0A1B0GTK4 181 aa14.34□□□□□ -0.11
NEDD8-208ENST00000560427 DGKIO75912 1065 aa14.34□□□□□ -0.11
NEDD8-208ENST00000560427 FAM13AO94988 1023 aa14.34□□□□□ -0.11
NEDD8-208ENST00000560427 PBX2P40425 430 aa14.34□□□□□ -0.11
NEDD8-208ENST00000560427 RABGGTBP53611 331 aa14.34□□□□□ -0.11
NEDD8-208ENST00000560427 AMPD3Q01432 767 aa14.34□□□□□ -0.11
NEDD8-208ENST00000560427 GIT2Q14161 759 aa14.34□□□□□ -0.11
NEDD8-208ENST00000560427 DHX8Q14562 1220 aaKnown RBP14.34□□□□□ -0.11
NEDD8-208ENST00000560427 PDILTQ8N807 584 aa14.34□□□□□ -0.11
NEDD8-208ENST00000560427 CNNM3Q8NE01 707 aa14.34□□□□□ -0.11
NEDD8-208ENST00000560427 SLC28A3Q9HAS3 691 aa14.34□□□□□ -0.11
NEDD8-208ENST00000560427 RC3H2Q9HBD1 1191 aaKnown RBP14.34□□□□□ -0.11
NEDD8-208ENST00000560427 FAM105AQ9NUU6 356 aa14.34□□□□□ -0.11
NEDD8-208ENST00000560427 KBTBD4Q9NVX7 518 aa14.34□□□□□ -0.11
NEDD8-208ENST00000560427 SEL1LQ9UBV2 794 aa14.34□□□□□ -0.11
NEDD8-208ENST00000560427 KCNH3Q9ULD8 1083 aa14.34□□□□□ -0.11
NEDD8-208ENST00000560427 YBX2Q9Y2T7 364 aaKnown RBP14.34□□□□□ -0.11
NEDD8-208ENST00000560427 ADGRA3Q8IWK6 1321 aa14.34□□□□□ -0.11
NEDD8-208ENST00000560427 TTC3P53804 2025 aa14.34□□□□□ -0.11
NEDD8-208ENST00000560427 CCDC169A6NNP5 214 aa14.33□□□□□ -0.12
NEDD8-208ENST00000560427 K7ERI5 159 aa14.33□□□□□ -0.12
NEDD8-208ENST00000560427 ACKR2O00590 384 aa14.33□□□□□ -0.12
NEDD8-208ENST00000560427 ZNF623O75123 536 aa14.33□□□□□ -0.12
NEDD8-208ENST00000560427 PRKCBP05771 671 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms