RNA–Protein interactions for RNA: ENST00000559399.5

LRRC28-213, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-213ENST00000559399 OTUD6AQ7L8S5 288 aa16.7■□□□□ 0.26
LRRC28-213ENST00000559399 MRPL43Q8N983 215 aaKnown RBP16.7■□□□□ 0.26
LRRC28-213ENST00000559399 NECAB1Q8N987 351 aa16.7■□□□□ 0.26
LRRC28-213ENST00000559399 ZNF579Q8NAF0 562 aaKnown RBP16.7■□□□□ 0.26
LRRC28-213ENST00000559399 PRPF31Q8WWY3 499 aaKnown RBP16.7■□□□□ 0.26
LRRC28-213ENST00000559399 LPPQ93052 612 aa16.7■□□□□ 0.26
LRRC28-213ENST00000559399 GTF3C6Q969F1 213 aa16.7■□□□□ 0.26
LRRC28-213ENST00000559399 TMEM143Q96AN5 459 aa16.7■□□□□ 0.26
LRRC28-213ENST00000559399 TMEM169Q96HH4 297 aa16.7■□□□□ 0.26
LRRC28-213ENST00000559399 ZSWIM4Q9H7M6 989 aa16.7■□□□□ 0.26
LRRC28-213ENST00000559399 IFT122Q9HBG6 1241 aa16.7■□□□□ 0.26
LRRC28-213ENST00000559399 BMP2KQ9NSY1 1161 aaPredicted RBP16.7■□□□□ 0.26
LRRC28-213ENST00000559399 KIAA1671Q9BY89 1806 aa16.7■□□□□ 0.26
LRRC28-213ENST00000559399 MYO7AQ13402 2215 aa16.69■□□□□ 0.26
LRRC28-213ENST00000559399 ATG2AQ2TAZ0 1938 aa16.69■□□□□ 0.26
LRRC28-213ENST00000559399 FAM205CA6NFA0 338 aa16.69■□□□□ 0.26
LRRC28-213ENST00000559399 C2orf71A6NGG8 1288 aa16.69■□□□□ 0.26
LRRC28-213ENST00000559399 ZNF623O75123 536 aa16.69■□□□□ 0.26
LRRC28-213ENST00000559399 FDPSP14324 419 aaKnown RBP16.69■□□□□ 0.26
LRRC28-213ENST00000559399 HOXB8P17481 243 aaPredicted RBP16.69■□□□□ 0.26
LRRC28-213ENST00000559399 CYP4A11Q02928 519 aa16.69■□□□□ 0.26
LRRC28-213ENST00000559399 BMS1Q14692 1282 aaKnown RBP16.69■□□□□ 0.26
LRRC28-213ENST00000559399 EMC2Q15006 297 aa16.69■□□□□ 0.26
LRRC28-213ENST00000559399 ME3Q16798 604 aa16.69■□□□□ 0.26
LRRC28-213ENST00000559399 LONRF3Q496Y0 759 aa16.69■□□□□ 0.26
LRRC28-213ENST00000559399 NOMO2Q5JPE7 1267 aa16.69■□□□□ 0.26
LRRC28-213ENST00000559399 TCP11Q8WWU5 503 aa16.69■□□□□ 0.26
LRRC28-213ENST00000559399 CASP10Q92851 521 aa16.69■□□□□ 0.26
LRRC28-213ENST00000559399 TNFRSF25Q93038 417 aa16.69■□□□□ 0.26
LRRC28-213ENST00000559399 PGBD4Q96DM1 585 aa16.69■□□□□ 0.26
LRRC28-213ENST00000559399 DYDC2Q96IM9 177 aa16.69■□□□□ 0.26
LRRC28-213ENST00000559399 RPGRIP1Q96KN7 1286 aa16.69■□□□□ 0.26
LRRC28-213ENST00000559399 RGL1Q9NZL6 768 aa16.69■□□□□ 0.26
LRRC28-213ENST00000559399 INPP5FQ9Y2H2 1132 aa16.69■□□□□ 0.26
LRRC28-213ENST00000559399 MEIS3P2A8K0S8 358 aa16.68■□□□□ 0.26
LRRC28-213ENST00000559399 NT5C1B-RDH14C9J2C7 533 aa16.68■□□□□ 0.26
LRRC28-213ENST00000559399 EIF5BO60841 1220 aaKnown RBP16.68■□□□□ 0.26
LRRC28-213ENST00000559399 SRGAP2CP0DJJ0 459 aa16.68■□□□□ 0.26
LRRC28-213ENST00000559399 CA8P35219 290 aa16.68■□□□□ 0.26
LRRC28-213ENST00000559399 RNASELQ05823 741 aaKnown RBP16.68■□□□□ 0.26
LRRC28-213ENST00000559399 LAMTOR4Q0VGL1 99 aa16.68■□□□□ 0.26
LRRC28-213ENST00000559399 CTTNQ14247 550 aaKnown RBP16.68■□□□□ 0.26
LRRC28-213ENST00000559399 XKR9Q5GH70 373 aa16.68■□□□□ 0.26
LRRC28-213ENST00000559399 SYCE2Q6PIF2 218 aa16.68■□□□□ 0.26
LRRC28-213ENST00000559399 HFE2Q6ZVN8 426 aa16.68■□□□□ 0.26
LRRC28-213ENST00000559399 SRGAP1Q7Z6B7 1085 aa16.68■□□□□ 0.26
LRRC28-213ENST00000559399 TMEM173Q86WV6 379 aaPredicted RBP16.68■□□□□ 0.26
LRRC28-213ENST00000559399 EDAQ92838 391 aa16.68■□□□□ 0.26
LRRC28-213ENST00000559399 S1PR5Q9H228 398 aa16.68■□□□□ 0.26
LRRC28-213ENST00000559399 TBC1D13Q9NVG8 400 aa16.68■□□□□ 0.26
LRRC28-213ENST00000559399 PCDHB2Q9Y5E7 798 aa16.68■□□□□ 0.26
LRRC28-213ENST00000559399 HCFC2Q9Y5Z7 792 aa16.68■□□□□ 0.26
LRRC28-213ENST00000559399 OFD1O75665 1012 aa16.67■□□□□ 0.26
LRRC28-213ENST00000559399 LARGE1O95461 756 aa16.67■□□□□ 0.26
LRRC28-213ENST00000559399 TRIM29Q14134 588 aa16.67■□□□□ 0.26
LRRC28-213ENST00000559399 CALCRLQ16602 461 aa16.67■□□□□ 0.26
LRRC28-213ENST00000559399 TPRNQ4KMQ1 711 aa16.67■□□□□ 0.26
LRRC28-213ENST00000559399 TPH2Q8IWU9 490 aa16.67■□□□□ 0.26
LRRC28-213ENST00000559399 VPS52Q8N1B4 723 aa16.67■□□□□ 0.26
LRRC28-213ENST00000559399 RNF149Q8NC42 400 aa16.67■□□□□ 0.26
LRRC28-213ENST00000559399 NSUN7Q8NE18 718 aaKnown RBP16.67■□□□□ 0.26
LRRC28-213ENST00000559399 URGCPQ8TCY9 931 aa16.67■□□□□ 0.26
LRRC28-213ENST00000559399 MTRQ99707 1265 aa16.67■□□□□ 0.26
LRRC28-213ENST00000559399 APOL5Q9BWW9 433 aa16.67■□□□□ 0.26
LRRC28-213ENST00000559399 NRDE2Q9H7Z3 1164 aa16.67■□□□□ 0.26
LRRC28-213ENST00000559399 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.66■□□□□ 0.26
LRRC28-213ENST00000559399 ASAP2O43150 1006 aa16.66■□□□□ 0.26
LRRC28-213ENST00000559399 CLASP2O75122 1294 aaKnown RBP16.66■□□□□ 0.26
LRRC28-213ENST00000559399 CXCL14O95715 111 aa16.66■□□□□ 0.26
LRRC28-213ENST00000559399 HOXD11P31277 338 aaPredicted RBP16.66■□□□□ 0.26
LRRC28-213ENST00000559399 ERICH6BQ5W0A0 696 aa16.66■□□□□ 0.26
LRRC28-213ENST00000559399 DDX53Q86TM3 631 aaKnown RBP16.66■□□□□ 0.26
LRRC28-213ENST00000559399 FERMT3Q86UX7 667 aa16.66■□□□□ 0.26
LRRC28-213ENST00000559399 DIS3L2Q8IYB7 885 aaKnown RBP16.66■□□□□ 0.26
LRRC28-213ENST00000559399 TMEM87AQ8NBN3 555 aa16.66■□□□□ 0.26
LRRC28-213ENST00000559399 IGSF21Q96ID5 467 aa16.66■□□□□ 0.26
LRRC28-213ENST00000559399 MFSD14AQ96MC6 490 aa16.66■□□□□ 0.26
LRRC28-213ENST00000559399 EIF2AK1Q9BQI3 630 aaKnown RBP16.66■□□□□ 0.26
LRRC28-213ENST00000559399 GBP3Q9H0R5 595 aa16.66■□□□□ 0.26
LRRC28-213ENST00000559399 ZBP1Q9H171 429 aa16.66■□□□□ 0.26
LRRC28-213ENST00000559399 MINDY3Q9H8M7 445 aa16.66■□□□□ 0.26
LRRC28-213ENST00000559399 PCDHA12Q9UN75 941 aa16.66■□□□□ 0.26
LRRC28-213ENST00000559399 CNTNAP2Q9UHC6 1331 aa16.66■□□□□ 0.26
LRRC28-213ENST00000559399 FNDC1Q4ZHG4 1894 aaPredicted RBP16.65■□□□□ 0.26
LRRC28-213ENST00000559399 PLXNA4Q9HCM2 1894 aa16.65■□□□□ 0.26
LRRC28-213ENST00000559399 BTBD18B2RXH4 712 aa16.65■□□□□ 0.26
LRRC28-213ENST00000559399 ZBTB39O15060 712 aa16.65■□□□□ 0.26
LRRC28-213ENST00000559399 NEMFO60524 1076 aa16.65■□□□□ 0.26
LRRC28-213ENST00000559399 JAK2O60674 1132 aa16.65■□□□□ 0.26
LRRC28-213ENST00000559399 ERLIN2O94905 339 aa16.65■□□□□ 0.26
LRRC28-213ENST00000559399 SLITRK3O94933 977 aa16.65■□□□□ 0.26
LRRC28-213ENST00000559399 LYPLA2O95372 231 aa16.65■□□□□ 0.26
LRRC28-213ENST00000559399 GALTP07902 379 aa16.65■□□□□ 0.26
LRRC28-213ENST00000559399 HOXA11P31270 313 aaPredicted RBP16.65■□□□□ 0.26
LRRC28-213ENST00000559399 NEK4P51957 841 aa16.65■□□□□ 0.26
LRRC28-213ENST00000559399 GIT2Q14161 759 aa16.65■□□□□ 0.26
LRRC28-213ENST00000559399 MXD4Q14582 209 aaPredicted RBP16.65■□□□□ 0.26
LRRC28-213ENST00000559399 PCBP1Q15365 356 aaKnown RBP eCLIP16.65■□□□□ 0.26
LRRC28-213ENST00000559399 CES5AQ6NT32 575 aa16.65■□□□□ 0.26
LRRC28-213ENST00000559399 AGMOQ6ZNB7 445 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms