RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 RNF216Q9NWF9 866 aaPredicted RBP10.18□□□□□ -0.78
LDLR-210ENST00000559340 EXOC7Q9UPT5 735 aa10.18□□□□□ -0.78
LDLR-210ENST00000559340 GINS2Q9Y248 185 aa10.18□□□□□ -0.78
LDLR-210ENST00000559340 TRIOBPQ9H2D6 2365 aa10.18□□□□□ -0.78
LDLR-210ENST00000559340 CEP290O15078 2479 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 INO80B-WBP1J3KQ70 363 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 ERLIN2O94905 339 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 CHRNA1P02708 482 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 CTSHP09668 335 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 DARSP14868 501 aaKnown RBP10.17□□□□□ -0.78
LDLR-210ENST00000559340 AXLP30530 894 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 PPP1R2P41236 205 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 NPTX2P47972 431 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 MDM2Q00987 491 aaPredicted RBP10.17□□□□□ -0.78
LDLR-210ENST00000559340 CACNB1Q02641 598 aaPredicted RBP10.17□□□□□ -0.78
LDLR-210ENST00000559340 MGAT3Q09327 533 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 TMEM62Q0P6H9 643 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 COASYQ13057 564 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 DRP2Q13474 957 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 PNOCQ13519 176 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 CAPSQ13938 189 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 NFKBIBQ15653 356 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 TMEM132AQ24JP5 1023 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 KIZQ2M2Z5 673 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 KLHL40Q2TBA0 621 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 FAM26FQ5R3K3 315 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 CCDC183Q5T5S1 534 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 TSHZ1Q6ZSZ6 1077 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 CATSPER4Q7RTX7 472 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 GRAMD1CQ8IYS0 662 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 DAW1Q8N136 415 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 TRIML1Q8N9V2 468 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 GPT2Q8TD30 523 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 SEPT8Q92599 483 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 APBB2Q92870 758 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 KCNN1Q92952 543 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 ZBTB10Q96DT7 871 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 PRIMPOLQ96LW4 560 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 FTHL17Q9BXU8 183 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 ST6GALNAC4Q9H4F1 302 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 CITO14578 2027 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 BRCA2P51587 3418 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 SIP14410 1827 aa10.17□□□□□ -0.78
LDLR-210ENST00000559340 MICAL3Q7RTP6 2002 aa10.16□□□□□ -0.78
LDLR-210ENST00000559340 UBE4BO95155 1302 aa10.16□□□□□ -0.78
LDLR-210ENST00000559340 TRIM43BA6NCK2 446 aa10.16□□□□□ -0.78
LDLR-210ENST00000559340 K7ENM7 598 aa10.16□□□□□ -0.78
LDLR-210ENST00000559340 SLC16A4O15374 487 aa10.16□□□□□ -0.78
LDLR-210ENST00000559340 EFCAB14O75071 495 aa10.16□□□□□ -0.78
LDLR-210ENST00000559340 RHOBTB3O94955 611 aa10.16□□□□□ -0.78
LDLR-210ENST00000559340 ACTN1P12814 892 aa10.16□□□□□ -0.78
LDLR-210ENST00000559340 ZSCAN20P17040 1043 aaPredicted RBP10.16□□□□□ -0.78
LDLR-210ENST00000559340 CYP2C18P33260 490 aa10.16□□□□□ -0.78
LDLR-210ENST00000559340 NCKAP1LP55160 1127 aa10.16□□□□□ -0.78
LDLR-210ENST00000559340 PAK2Q13177 524 aa10.16□□□□□ -0.78
LDLR-210ENST00000559340 STIM1Q13586 685 aa10.16□□□□□ -0.78
LDLR-210ENST00000559340 HSP90AA2PQ14568 343 aaPredicted RBP10.16□□□□□ -0.78
LDLR-210ENST00000559340 FAM187BQ17R55 369 aa10.16□□□□□ -0.78
LDLR-210ENST00000559340 KMT5BQ4FZB7 885 aa10.16□□□□□ -0.78
LDLR-210ENST00000559340 FBXO47Q5MNV8 452 aa10.16□□□□□ -0.78
LDLR-210ENST00000559340 CDCA2Q69YH5 1023 aaPredicted RBP10.16□□□□□ -0.78
LDLR-210ENST00000559340 ZNF720Q7Z2F6 126 aa10.16□□□□□ -0.78
LDLR-210ENST00000559340 HAUS6Q7Z4H7 955 aa10.16□□□□□ -0.78
LDLR-210ENST00000559340 SFR1Q86XK3 245 aa10.16□□□□□ -0.78
LDLR-210ENST00000559340 KSR1Q8IVT5 923 aa10.16□□□□□ -0.78
LDLR-210ENST00000559340 WNT8BQ93098 351 aa10.16□□□□□ -0.78
LDLR-210ENST00000559340 TRIM43Q96BQ3 446 aaPredicted RBP10.16□□□□□ -0.78
LDLR-210ENST00000559340 CCDC51Q96ER9 411 aa10.16□□□□□ -0.78
LDLR-210ENST00000559340 ACCSQ96QU6 501 aa10.16□□□□□ -0.78
LDLR-210ENST00000559340 PPP1R16BQ96T49 567 aa10.16□□□□□ -0.78
LDLR-210ENST00000559340 OSMRQ99650 979 aa10.16□□□□□ -0.78
LDLR-210ENST00000559340 TMEM206Q9H813 350 aa10.16□□□□□ -0.78
LDLR-210ENST00000559340 IFT122Q9HBG6 1241 aa10.16□□□□□ -0.78
LDLR-210ENST00000559340 POLD4Q9HCU8 107 aa10.16□□□□□ -0.78
LDLR-210ENST00000559340 CHST12Q9NRB3 414 aa10.16□□□□□ -0.78
LDLR-210ENST00000559340 KIAA1468Q9P260 1216 aa10.16□□□□□ -0.78
LDLR-210ENST00000559340 ARHGAP28Q9P2N2 729 aa10.16□□□□□ -0.78
LDLR-210ENST00000559340 PCDHA5Q9Y5H7 936 aa10.16□□□□□ -0.78
LDLR-210ENST00000559340 TRIP11Q15643 1979 aa10.15□□□□□ -0.78
LDLR-210ENST00000559340 DENND3A2RUS2 1198 aa10.15□□□□□ -0.78
LDLR-210ENST00000559340 ACKR2O00590 384 aa10.15□□□□□ -0.78
LDLR-210ENST00000559340 EIF3DO15371 548 aaKnown RBP eCLIP10.15□□□□□ -0.78
LDLR-210ENST00000559340 KLRC4O43908 158 aa10.15□□□□□ -0.78
LDLR-210ENST00000559340 GCNT3O95395 438 aa10.15□□□□□ -0.78
LDLR-210ENST00000559340 PRKCBP05771 671 aa10.15□□□□□ -0.78
LDLR-210ENST00000559340 SKIP12755 728 aa10.15□□□□□ -0.78
LDLR-210ENST00000559340 CCL23P55773 120 aa10.15□□□□□ -0.78
LDLR-210ENST00000559340 SNRPFP62306 86 aaKnown RBP10.15□□□□□ -0.78
LDLR-210ENST00000559340 GTF2BQ00403 316 aa10.15□□□□□ -0.78
LDLR-210ENST00000559340 FPGSQ05932 587 aa10.15□□□□□ -0.78
LDLR-210ENST00000559340 NFX1Q12986 1120 aaKnown RBP10.15□□□□□ -0.78
LDLR-210ENST00000559340 CAMK4Q16566 473 aa10.15□□□□□ -0.78
LDLR-210ENST00000559340 NT5DC1Q5TFE4 455 aa10.15□□□□□ -0.78
LDLR-210ENST00000559340 ZNF658Q5TYW1 1059 aaPredicted RBP10.15□□□□□ -0.78
LDLR-210ENST00000559340 PPP4R3CPQ6ZMV5 832 aa10.15□□□□□ -0.78
LDLR-210ENST00000559340 SYCP3Q8IZU3 236 aa10.15□□□□□ -0.78
LDLR-210ENST00000559340 TMEM161BQ8NDZ6 487 aa10.15□□□□□ -0.78
LDLR-210ENST00000559340 BSNDQ8WZ55 320 aa10.15□□□□□ -0.78
LDLR-210ENST00000559340 ADPGKQ9BRR6 497 aa10.15□□□□□ -0.78
LDLR-210ENST00000559340 MRPL4Q9BYD3 311 aaKnown RBP10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms