RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 CCDC105Q8IYK2 499 aa13.33□□□□□ -0.27
LDLR-205ENST00000557933 FAM186BQ8IYM0 893 aa13.33□□□□□ -0.27
LDLR-205ENST00000557933 CCDC63Q8NA47 563 aa13.33□□□□□ -0.27
LDLR-205ENST00000557933 CNBD1Q8NA66 436 aa13.33□□□□□ -0.27
LDLR-205ENST00000557933 FAM167BQ9BTA0 163 aa13.33□□□□□ -0.27
LDLR-205ENST00000557933 EDEM3Q9BZQ6 932 aa13.33□□□□□ -0.27
LDLR-205ENST00000557933 NT5C3AQ9H0P0 336 aa13.33□□□□□ -0.27
LDLR-205ENST00000557933 VEZTQ9HBM0 779 aa13.33□□□□□ -0.27
LDLR-205ENST00000557933 POLLQ9UGP5 575 aa13.33□□□□□ -0.27
LDLR-205ENST00000557933 ABCB11O95342 1321 aa13.33□□□□□ -0.28
LDLR-205ENST00000557933 RPTORQ8N122 1335 aa13.33□□□□□ -0.28
LDLR-205ENST00000557933 DDX3YO15523 660 aaKnown RBP13.33□□□□□ -0.28
LDLR-205ENST00000557933 TGFB1I1O43294 461 aa13.33□□□□□ -0.28
LDLR-205ENST00000557933 ATP6V1G2O95670 118 aa13.33□□□□□ -0.28
LDLR-205ENST00000557933 DLATP10515 647 aaKnown RBP13.33□□□□□ -0.28
LDLR-205ENST00000557933 GJC1P36383 396 aa13.33□□□□□ -0.28
LDLR-205ENST00000557933 DDR1Q08345 913 aa13.33□□□□□ -0.28
LDLR-205ENST00000557933 ERMARDQ5T6L9 678 aa13.33□□□□□ -0.28
LDLR-205ENST00000557933 ZDHHC24Q6UX98 284 aa13.33□□□□□ -0.28
LDLR-205ENST00000557933 FAM47EQ6ZV65 393 aa13.33□□□□□ -0.28
LDLR-205ENST00000557933 COL23A1Q86Y22 540 aaPredicted RBP13.33□□□□□ -0.28
LDLR-205ENST00000557933 NSMCE1Q8WV22 266 aa13.33□□□□□ -0.28
LDLR-205ENST00000557933 HES6Q96HZ4 224 aa13.33□□□□□ -0.28
LDLR-205ENST00000557933 ERP44Q9BS26 406 aa13.33□□□□□ -0.28
LDLR-205ENST00000557933 ALG6Q9Y672 507 aa13.33□□□□□ -0.28
LDLR-205ENST00000557933 CCT8L1PA6NM43 557 aa13.33□□□□□ -0.28
LDLR-205ENST00000557933 TCP11X1B4DZS4 312 aa13.33□□□□□ -0.28
LDLR-205ENST00000557933 TNFAIP3P21580 790 aa13.33□□□□□ -0.28
LDLR-205ENST00000557933 FAM129AQ9BZQ8 928 aa13.33□□□□□ -0.28
LDLR-205ENST00000557933 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.33□□□□□ -0.28
LDLR-205ENST00000557933 STXBP5LQ9Y2K9 1186 aa13.33□□□□□ -0.28
LDLR-205ENST00000557933 SMCHD1A6NHR9 2005 aa13.32□□□□□ -0.28
LDLR-205ENST00000557933 GPR75-ASB3A0A0A6YYF3 556 aa13.32□□□□□ -0.28
LDLR-205ENST00000557933 TMEM150BA6NC51 233 aa13.32□□□□□ -0.28
LDLR-205ENST00000557933 GNA14O95837 355 aa13.32□□□□□ -0.28
LDLR-205ENST00000557933 TTLL1O95922 423 aa13.32□□□□□ -0.28
LDLR-205ENST00000557933 EZRP15311 586 aaKnown RBP13.32□□□□□ -0.28
LDLR-205ENST00000557933 POU5F1Q01860 360 aaKnown RBP13.32□□□□□ -0.28
LDLR-205ENST00000557933 KIAA1755Q5JYT7 1200 aa13.32□□□□□ -0.28
LDLR-205ENST00000557933 NUGGCQ68CJ6 796 aa13.32□□□□□ -0.28
LDLR-205ENST00000557933 SPATS2Q86XZ4 545 aaKnown RBP13.32□□□□□ -0.28
LDLR-205ENST00000557933 SLC30A5Q8TAD4 765 aa13.32□□□□□ -0.28
LDLR-205ENST00000557933 GOLGA8IPA6NC78 632 aa13.32□□□□□ -0.28
LDLR-205ENST00000557933 GOLGA8JA6NMD2 632 aa13.32□□□□□ -0.28
LDLR-205ENST00000557933 A6NNZ2 444 aa13.32□□□□□ -0.28
LDLR-205ENST00000557933 GCLMP48507 274 aa13.32□□□□□ -0.28
LDLR-205ENST00000557933 ERFP50548 548 aa13.32□□□□□ -0.28
LDLR-205ENST00000557933 PPP4CP60510 307 aa13.32□□□□□ -0.28
LDLR-205ENST00000557933 KLRC3Q07444 240 aa13.32□□□□□ -0.28
LDLR-205ENST00000557933 TUBB8Q3ZCM7 444 aa13.32□□□□□ -0.28
LDLR-205ENST00000557933 PHLDB3Q6NSJ2 640 aa13.32□□□□□ -0.28
LDLR-205ENST00000557933 KIAA0825Q8IV33 1275 aa13.32□□□□□ -0.28
LDLR-205ENST00000557933 AGAP11Q8TF27 550 aa13.32□□□□□ -0.28
LDLR-205ENST00000557933 ATXN2LQ8WWM7 1075 aaKnown RBP13.32□□□□□ -0.28
LDLR-205ENST00000557933 ZNF317Q96PQ6 595 aaPredicted RBP13.32□□□□□ -0.28
LDLR-205ENST00000557933 TRIM7Q9C029 511 aa13.32□□□□□ -0.28
LDLR-205ENST00000557933 ZDHHC18Q9NUE0 388 aa13.32□□□□□ -0.28
LDLR-205ENST00000557933 SERPINB13Q9UIV8 391 aa13.32□□□□□ -0.28
LDLR-205ENST00000557933 CEP83Q9Y592 693 aa13.32□□□□□ -0.28
LDLR-205ENST00000557933 KIAA0391O15091 583 aaKnown RBP13.31□□□□□ -0.28
LDLR-205ENST00000557933 CLSTN1O94985 981 aa13.31□□□□□ -0.28
LDLR-205ENST00000557933 FTLP02792 175 aaPredicted RBP13.31□□□□□ -0.28
LDLR-205ENST00000557933 SERPINB2P05120 415 aa13.31□□□□□ -0.28
LDLR-205ENST00000557933 PYGMP11217 842 aa13.31□□□□□ -0.28
LDLR-205ENST00000557933 RBM5P52756 815 aaKnown RBP eCLIP13.31□□□□□ -0.28
LDLR-205ENST00000557933 MTMR3Q13615 1198 aa13.31□□□□□ -0.28
LDLR-205ENST00000557933 ZYXQ15942 572 aaKnown RBP13.31□□□□□ -0.28
LDLR-205ENST00000557933 IFI16Q16666 785 aaKnown RBP13.31□□□□□ -0.28
LDLR-205ENST00000557933 ASPRV1Q53RT3 343 aa13.31□□□□□ -0.28
LDLR-205ENST00000557933 CCDC137Q6PK04 289 aaKnown RBP13.31□□□□□ -0.28
LDLR-205ENST00000557933 C15orf52Q6ZUT6 534 aaKnown RBP13.31□□□□□ -0.28
LDLR-205ENST00000557933 PRELID2Q8N945 189 aa13.31□□□□□ -0.28
LDLR-205ENST00000557933 OLIG1Q8TAK6 271 aa13.31□□□□□ -0.28
LDLR-205ENST00000557933 CRAMP1Q96RY5 1269 aa13.31□□□□□ -0.28
LDLR-205ENST00000557933 LRRC27Q9C0I9 530 aa13.31□□□□□ -0.28
LDLR-205ENST00000557933 UBE2TQ9NPD8 197 aaPredicted RBP13.31□□□□□ -0.28
LDLR-205ENST00000557933 STK32BQ9NY57 414 aa13.31□□□□□ -0.28
LDLR-205ENST00000557933 SAMD15Q9P1V8 674 aa13.31□□□□□ -0.28
LDLR-205ENST00000557933 SUCLA2Q9P2R7 463 aaPredicted RBP13.31□□□□□ -0.28
LDLR-205ENST00000557933 ROBO3Q96MS0 1386 aa13.31□□□□□ -0.28
LDLR-205ENST00000557933 IRS2Q9Y4H2 1338 aa13.31□□□□□ -0.28
LDLR-205ENST00000557933 ESYT2A0FGR8 921 aa13.31□□□□□ -0.28
LDLR-205ENST00000557933 DIAPH2O60879 1101 aa13.31□□□□□ -0.28
LDLR-205ENST00000557933 FAM13AO94988 1023 aa13.31□□□□□ -0.28
LDLR-205ENST00000557933 SOX5P35711 763 aa13.31□□□□□ -0.28
LDLR-205ENST00000557933 TAB3Q8N5C8 712 aaPredicted RBP13.31□□□□□ -0.28
LDLR-205ENST00000557933 SLC16A10Q8TF71 515 aa13.31□□□□□ -0.28
LDLR-205ENST00000557933 CENPFP49454 3210 aa13.31□□□□□ -0.28
LDLR-205ENST00000557933 CCDC188H7C350 402 aa13.3□□□□□ -0.28
LDLR-205ENST00000557933 IGF2BP3O00425 579 aaKnown RBP eCLIP13.3□□□□□ -0.28
LDLR-205ENST00000557933 MEIS2O14770 477 aa13.3□□□□□ -0.28
LDLR-205ENST00000557933 CFBP00751 764 aa13.3□□□□□ -0.28
LDLR-205ENST00000557933 EEF2P13639 858 aaKnown RBP13.3□□□□□ -0.28
LDLR-205ENST00000557933 COMTP21964 271 aa13.3□□□□□ -0.28
LDLR-205ENST00000557933 CLK2P49760 499 aaKnown RBP13.3□□□□□ -0.28
LDLR-205ENST00000557933 DUPD1Q68J44 220 aa13.3□□□□□ -0.28
LDLR-205ENST00000557933 RFFLQ8WZ73 363 aa13.3□□□□□ -0.28
LDLR-205ENST00000557933 SPOCK2Q92563 424 aa13.3□□□□□ -0.28
LDLR-205ENST00000557933 PABPC3Q9H361 631 aaKnown RBP13.3□□□□□ -0.28
LDLR-205ENST00000557933 ARHGEF10LQ9HCE6 1279 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms