RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 A0A0U1RQF3 1178 aa10.55□□□□□ -0.72
SYNE2-224ENST00000557024 EIF5BO60841 1220 aaKnown RBP10.55□□□□□ -0.72
SYNE2-224ENST00000557024 DDAH1O94760 285 aa10.55□□□□□ -0.72
SYNE2-224ENST00000557024 SSBP05455 408 aaKnown RBP eCLIP10.55□□□□□ -0.72
SYNE2-224ENST00000557024 CYP21A2P08686 494 aa10.55□□□□□ -0.72
SYNE2-224ENST00000557024 ATP4AP20648 1035 aa10.55□□□□□ -0.72
SYNE2-224ENST00000557024 FGFR4P22455 802 aa10.55□□□□□ -0.72
SYNE2-224ENST00000557024 KLRC2P26717 231 aa10.55□□□□□ -0.72
SYNE2-224ENST00000557024 GBP2P32456 591 aaPredicted RBP10.55□□□□□ -0.72
SYNE2-224ENST00000557024 FOSBP53539 338 aa10.55□□□□□ -0.72
SYNE2-224ENST00000557024 ANTXR2P58335 489 aa10.55□□□□□ -0.72
SYNE2-224ENST00000557024 PTPN14Q15678 1187 aa10.55□□□□□ -0.72
SYNE2-224ENST00000557024 ST3GAL2Q16842 350 aa10.55□□□□□ -0.72
SYNE2-224ENST00000557024 LONRF3Q496Y0 759 aa10.55□□□□□ -0.72
SYNE2-224ENST00000557024 CEP55Q53EZ4 464 aa10.55□□□□□ -0.72
SYNE2-224ENST00000557024 SWSAP1Q6NVH7 229 aa10.55□□□□□ -0.72
SYNE2-224ENST00000557024 HEATR3Q7Z4Q2 680 aa10.55□□□□□ -0.72
SYNE2-224ENST00000557024 DDX53Q86TM3 631 aaKnown RBP10.55□□□□□ -0.72
SYNE2-224ENST00000557024 ZNF598Q86UK7 904 aaKnown RBP10.55□□□□□ -0.72
SYNE2-224ENST00000557024 PPFIBP1Q86W92 1011 aa10.55□□□□□ -0.72
SYNE2-224ENST00000557024 SLC44A3Q8N4M1 653 aa10.55□□□□□ -0.72
SYNE2-224ENST00000557024 LRRC71Q8N4P6 559 aa10.55□□□□□ -0.72
SYNE2-224ENST00000557024 GPR152Q8TDT2 470 aa10.55□□□□□ -0.72
SYNE2-224ENST00000557024 IGDCC4Q8TDY8 1250 aa10.55□□□□□ -0.72
SYNE2-224ENST00000557024 IGSF21Q96ID5 467 aa10.55□□□□□ -0.72
SYNE2-224ENST00000557024 VN1R3Q9BXE9 311 aa10.55□□□□□ -0.72
SYNE2-224ENST00000557024 ADAMTS10Q9H324 1103 aa10.55□□□□□ -0.72
SYNE2-224ENST00000557024 DLGAP2Q9P1A6 1054 aa10.55□□□□□ -0.72
SYNE2-224ENST00000557024 NCDNQ9UBB6 729 aa10.55□□□□□ -0.72
SYNE2-224ENST00000557024 AKT3Q9Y243 479 aa10.55□□□□□ -0.72
SYNE2-224ENST00000557024 CACNA1GO43497 2377 aa10.54□□□□□ -0.72
SYNE2-224ENST00000557024 E7EWF7 191 aa10.54□□□□□ -0.72
SYNE2-224ENST00000557024 KINO60870 393 aaKnown RBP10.54□□□□□ -0.72
SYNE2-224ENST00000557024 CNPP09543 421 aaKnown RBP10.54□□□□□ -0.72
SYNE2-224ENST00000557024 MYBP10242 640 aa10.54□□□□□ -0.72
SYNE2-224ENST00000557024 SRFP11831 508 aa10.54□□□□□ -0.72
SYNE2-224ENST00000557024 RXRAP19793 462 aa10.54□□□□□ -0.72
SYNE2-224ENST00000557024 EIF4BP23588 611 aaKnown RBP10.54□□□□□ -0.72
SYNE2-224ENST00000557024 SMARCA1P28370 1054 aa10.54□□□□□ -0.72
SYNE2-224ENST00000557024 CLCN4P51793 760 aa10.54□□□□□ -0.72
SYNE2-224ENST00000557024 ATXN1P54253 815 aaKnown RBP10.54□□□□□ -0.72
SYNE2-224ENST00000557024 NONOQ15233 471 aaKnown RBP eCLIP10.54□□□□□ -0.72
SYNE2-224ENST00000557024 MIS18BP1Q6P0N0 1132 aa10.54□□□□□ -0.72
SYNE2-224ENST00000557024 C15orf39Q6ZRI6 1047 aa10.54□□□□□ -0.72
SYNE2-224ENST00000557024 CCDC82Q8N4S0 544 aa10.54□□□□□ -0.72
SYNE2-224ENST00000557024 NCOA7Q8NI08 942 aa10.54□□□□□ -0.72
SYNE2-224ENST00000557024 LPPQ93052 612 aa10.54□□□□□ -0.72
SYNE2-224ENST00000557024 SCLT1Q96NL6 688 aa10.54□□□□□ -0.72
SYNE2-224ENST00000557024 KLHL5Q96PQ7 755 aa10.54□□□□□ -0.72
SYNE2-224ENST00000557024 MYADMQ96S97 322 aa10.54□□□□□ -0.72
SYNE2-224ENST00000557024 MAP7D2Q96T17 732 aa10.54□□□□□ -0.72
SYNE2-224ENST00000557024 MAP3K14Q99558 947 aa10.54□□□□□ -0.72
SYNE2-224ENST00000557024 LZTS2Q9BRK4 669 aa10.54□□□□□ -0.72
SYNE2-224ENST00000557024 FOXQ1Q9C009 403 aa10.54□□□□□ -0.72
SYNE2-224ENST00000557024 GBP3Q9H0R5 595 aa10.54□□□□□ -0.72
SYNE2-224ENST00000557024 LY9Q9HBG7 655 aa10.54□□□□□ -0.72
SYNE2-224ENST00000557024 ARHGEF3Q9NR81 526 aa10.54□□□□□ -0.72
SYNE2-224ENST00000557024 INPP5FQ9Y2H2 1132 aa10.54□□□□□ -0.72
SYNE2-224ENST00000557024 CFAP47Q6ZTR5 3102 aa10.54□□□□□ -0.72
SYNE2-224ENST00000557024 SPTBN2O15020 2390 aa10.53□□□□□ -0.72
SYNE2-224ENST00000557024 FAM205CA6NFA0 338 aa10.53□□□□□ -0.72
SYNE2-224ENST00000557024 MEIS1O00470 390 aa10.53□□□□□ -0.72
SYNE2-224ENST00000557024 LRRN2O75325 713 aa10.53□□□□□ -0.72
SYNE2-224ENST00000557024 CSDE1O75534 798 aaKnown RBP10.53□□□□□ -0.72
SYNE2-224ENST00000557024 GALTP07902 379 aa10.53□□□□□ -0.72
SYNE2-224ENST00000557024 GLULP15104 373 aa10.53□□□□□ -0.72
SYNE2-224ENST00000557024 SLC11A1P49279 550 aa10.53□□□□□ -0.72
SYNE2-224ENST00000557024 GNAQP50148 359 aa10.53□□□□□ -0.72
SYNE2-224ENST00000557024 VARS2Q5ST30 1063 aaKnown RBP10.53□□□□□ -0.72
SYNE2-224ENST00000557024 KIAA0319Q5VV43 1072 aa10.53□□□□□ -0.72
SYNE2-224ENST00000557024 PHLDB3Q6NSJ2 640 aa10.53□□□□□ -0.72
SYNE2-224ENST00000557024 EFCAB12Q6NXP0 572 aa10.53□□□□□ -0.72
SYNE2-224ENST00000557024 RAB11FIP4Q86YS3 637 aa10.53□□□□□ -0.72
SYNE2-224ENST00000557024 MAML2Q8IZL2 1156 aaPredicted RBP10.53□□□□□ -0.72
SYNE2-224ENST00000557024 ST13P5Q8NFI4 369 aaPredicted RBP10.53□□□□□ -0.72
SYNE2-224ENST00000557024 EMILIN2Q9BXX0 1053 aa10.53□□□□□ -0.72
SYNE2-224ENST00000557024 NRDE2Q9H7Z3 1164 aa10.53□□□□□ -0.72
SYNE2-224ENST00000557024 MAN1C1Q9NR34 630 aa10.53□□□□□ -0.72
SYNE2-224ENST00000557024 TBC1D13Q9NVG8 400 aa10.53□□□□□ -0.72
SYNE2-224ENST00000557024 DNAJB4Q9UDY4 337 aa10.53□□□□□ -0.72
SYNE2-224ENST00000557024 CDV3Q9UKY7 258 aaKnown RBP10.53□□□□□ -0.72
SYNE2-224ENST00000557024 CHD6Q8TD26 2715 aa10.53□□□□□ -0.72
SYNE2-224ENST00000557024 CLUHO75153 1309 aa10.53□□□□□ -0.72
SYNE2-224ENST00000557024 LOXHD1Q8IVV2 1947 aa10.52□□□□□ -0.72
SYNE2-224ENST00000557024 CCDC195A0A1B0GUA6 201 aa10.52□□□□□ -0.73
SYNE2-224ENST00000557024 DCDC2BA2VCK2 349 aa10.52□□□□□ -0.73
SYNE2-224ENST00000557024 C2CD2LO14523 706 aa10.52□□□□□ -0.73
SYNE2-224ENST00000557024 B4GALT3O60512 393 aa10.52□□□□□ -0.73
SYNE2-224ENST00000557024 DARSP14868 501 aaKnown RBP10.52□□□□□ -0.73
SYNE2-224ENST00000557024 SDHBP21912 280 aa10.52□□□□□ -0.73
SYNE2-224ENST00000557024 CHMLP26374 656 aa10.52□□□□□ -0.73
SYNE2-224ENST00000557024 ZNF76P36508 570 aa10.52□□□□□ -0.73
SYNE2-224ENST00000557024 PTH1RQ03431 593 aa10.52□□□□□ -0.73
SYNE2-224ENST00000557024 RNASELQ05823 741 aaKnown RBP10.52□□□□□ -0.73
SYNE2-224ENST00000557024 NOMO2Q5JPE7 1267 aa10.52□□□□□ -0.73
SYNE2-224ENST00000557024 DCLRE1AQ6PJP8 1040 aa10.52□□□□□ -0.73
SYNE2-224ENST00000557024 GLB1LQ6UWU2 654 aa10.52□□□□□ -0.73
SYNE2-224ENST00000557024 NFXL1Q6ZNB6 911 aa10.52□□□□□ -0.73
SYNE2-224ENST00000557024 MB21D2Q8IYB1 491 aaPredicted RBP10.52□□□□□ -0.73
SYNE2-224ENST00000557024 LINC01465Q8N7H1 131 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms