RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 CLDN3O15551 220 aa13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 FECHP22830 423 aa13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 HSPA1LP34931 641 aa13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 MARCKSL1P49006 195 aa13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 BFSP1Q12934 665 aa13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 DMP1Q13316 513 aaPredicted RBP13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 PACS2Q86VP3 889 aa13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 CBWD2Q8IUF1 395 aa13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 ANKS4BQ8N8V4 417 aa13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 ATG4AQ8WYN0 398 aa13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 NUP85Q9BW27 656 aa13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 CNOT8Q9UFF9 292 aaKnown RBP13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 MDH1P40925 334 aaKnown RBP13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 SPP2Q13103 211 aa13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 SYCP2LQ5T4T6 812 aa13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 SCARA5Q6ZMJ2 495 aa13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 NEK9Q8TD19 979 aa13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 ZNF473Q8WTR7 871 aaKnown RBP13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 CPA5Q8WXQ8 436 aa13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 KIFAP3Q92845 792 aa13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 FAM163AQ96GL9 167 aaPredicted RBP13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 P2RX7Q99572 595 aaKnown RBP13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 AGPAT1Q99943 283 aa13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 WDR18Q9BV38 432 aa13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 KCNH7Q9NS40 1196 aa13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 THAP12O43422 761 aa13.08□□□□□ -0.31
CCDC88C-211ENST00000556726 SGPL1O95470 568 aa13.08□□□□□ -0.31
CCDC88C-211ENST00000556726 COMTP21964 271 aa13.08□□□□□ -0.31
CCDC88C-211ENST00000556726 TTLL12Q14166 644 aaPredicted RBP13.08□□□□□ -0.31
CCDC88C-211ENST00000556726 DCUN1D2Q6PH85 259 aa13.08□□□□□ -0.31
CCDC88C-211ENST00000556726 CCDC137Q6PK04 289 aaKnown RBP13.08□□□□□ -0.31
CCDC88C-211ENST00000556726 ZBTB33Q86T24 672 aa13.08□□□□□ -0.31
CCDC88C-211ENST00000556726 NIM1KQ8IY84 436 aa13.08□□□□□ -0.31
CCDC88C-211ENST00000556726 FBXO25Q8TCJ0 367 aa13.08□□□□□ -0.31
CCDC88C-211ENST00000556726 RNF25Q96BH1 459 aaPredicted RBP13.08□□□□□ -0.31
CCDC88C-211ENST00000556726 IFT74Q96LB3 600 aa13.08□□□□□ -0.31
CCDC88C-211ENST00000556726 C11orf70Q9BRQ4 267 aa13.08□□□□□ -0.31
CCDC88C-211ENST00000556726 GANQ9H2C0 597 aa13.08□□□□□ -0.31
CCDC88C-211ENST00000556726 C4AP0C0L4 1744 aa13.08□□□□□ -0.32
CCDC88C-211ENST00000556726 C4BP0C0L5 1744 aa13.08□□□□□ -0.32
CCDC88C-211ENST00000556726 PKD1L3Q7Z443 1732 aa13.08□□□□□ -0.32
CCDC88C-211ENST00000556726 MYH14Q7Z406 1995 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-211ENST00000556726 HMGB1P1B2RPK0 211 aaPredicted RBP13.08□□□□□ -0.32
CCDC88C-211ENST00000556726 PI4K2BG5E9Z4 385 aa13.08□□□□□ -0.32
CCDC88C-211ENST00000556726 RPSAP08865 295 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-211ENST00000556726 POLD1P28340 1107 aa13.08□□□□□ -0.32
CCDC88C-211ENST00000556726 ACOT2P49753 483 aa13.08□□□□□ -0.32
CCDC88C-211ENST00000556726 JAG1P78504 1218 aa13.08□□□□□ -0.32
CCDC88C-211ENST00000556726 STRIP1Q5VSL9 837 aa13.08□□□□□ -0.32
CCDC88C-211ENST00000556726 IRF2BP2Q7Z5L9 587 aa13.08□□□□□ -0.32
CCDC88C-211ENST00000556726 KRT35Q92764 455 aa13.08□□□□□ -0.32
CCDC88C-211ENST00000556726 CNKSR1Q969H4 720 aa13.08□□□□□ -0.32
CCDC88C-211ENST00000556726 LBHD1Q9BQE6 289 aaPredicted RBP13.08□□□□□ -0.32
CCDC88C-211ENST00000556726 KCNMB3Q9NPA1 279 aa13.08□□□□□ -0.32
CCDC88C-211ENST00000556726 FAM114A2Q9NRY5 505 aa13.08□□□□□ -0.32
CCDC88C-211ENST00000556726 ASTN1O14525 1302 aa13.08□□□□□ -0.32
CCDC88C-211ENST00000556726 EIF4E1BA6NMX2 242 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-211ENST00000556726 MMEP08473 750 aa13.08□□□□□ -0.32
CCDC88C-211ENST00000556726 SREBF1P36956 1147 aa13.08□□□□□ -0.32
CCDC88C-211ENST00000556726 CUL1Q13616 776 aa13.08□□□□□ -0.32
CCDC88C-211ENST00000556726 SEPT14Q6ZU15 432 aa13.08□□□□□ -0.32
CCDC88C-211ENST00000556726 ZSWIM2Q8NEG5 633 aa13.08□□□□□ -0.32
CCDC88C-211ENST00000556726 ZNF564Q8TBZ8 553 aaPredicted RBP13.08□□□□□ -0.32
CCDC88C-211ENST00000556726 STK33Q9BYT3 514 aa13.08□□□□□ -0.32
CCDC88C-211ENST00000556726 C1orf112Q9NSG2 853 aa13.08□□□□□ -0.32
CCDC88C-211ENST00000556726 HSPBP1Q9NZL4 362 aa13.08□□□□□ -0.32
CCDC88C-211ENST00000556726 PITPNM2Q9BZ72 1349 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 F8VZ95 297 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 GOLGA8SH3BPF8 625 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 MARK3P27448 753 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 SLC29A2Q14542 456 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 EPHA7Q15375 998 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 FAM47EQ6ZV65 393 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 SH3BP5LQ7L8J4 393 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 ACSF2Q96CM8 615 aaPredicted RBP13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 IMPG2Q9BZV3 1241 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 DNAJC5Q9H3Z4 198 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 GABBR1Q9UBS5 961 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 ADAMTSL3P82987 1691 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 GOLGA8MH3BSY2 632 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 CCDC188H7C350 402 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 ZBED4O75132 1171 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 KRT15P19012 456 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 CORO7P57737 925 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 GPC5P78333 572 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 LONRF1Q17RB8 773 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 C10orf76Q5T2E6 689 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 SWSAP1Q6NVH7 229 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 CPNE8Q86YQ8 564 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 ARHGEF19Q8IW93 802 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 ZDHHC15Q96MV8 337 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 PAGR1Q9BTK6 254 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 VPS37BQ9H9H4 285 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 AIPL1Q9NZN9 384 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 PCDHB4Q9Y5E5 795 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 PMS2P54278 862 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 MFAP3P55082 362 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 PPP2R2AP63151 447 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 STRN3Q13033 797 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 HIBCHQ6NVY1 386 aaPredicted RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms