RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 NUP160Q12769 1436 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 ALG1L2C9J202 215 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 H7C1D1 291 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 FOXP2O15409 715 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 CUTAO60888 179 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 HIP1RO75146 1068 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 FKBP9O95302 570 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 ACO1P21399 889 aaKnown RBP2.08□□□□□ -2.08
PRPF39-208ENST00000554785 ADCYAP1R1P41586 468 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 ID4P47928 161 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 KPNA1P52294 538 aaPredicted RBP2.08□□□□□ -2.08
PRPF39-208ENST00000554785 IRF9Q00978 393 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 OCRLQ01968 901 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 HGFACQ04756 655 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 STAT4Q14765 748 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 ZNF174Q15697 407 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 TMEM200BQ69YZ2 307 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 DPP8Q6V1X1 898 aaPredicted RBP2.08□□□□□ -2.08
PRPF39-208ENST00000554785 LHFPL2Q6ZUX7 228 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 KRTAP5-2Q701N4 177 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 FKBP9P1Q75LS8 142 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 OTOP2Q7RTS6 562 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 C11orf74Q86VG3 221 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 IFNL2Q8IZJ0 200 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 HIPK4Q8NE63 616 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 OR14A2Q96R54 314 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 HOMER2Q9NSB8 354 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 OXSMQ9NWU1 459 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 SLC5A4Q9NY91 659 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 DDX56Q9NY93 547 aaKnown RBP2.08□□□□□ -2.08
PRPF39-208ENST00000554785 APOBEC2Q9Y235 224 aaKnown RBP2.08□□□□□ -2.08
PRPF39-208ENST00000554785 TCAF1Q9Y4C2 921 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 PHLDB1Q86UU1 1377 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 MAP3K4Q9Y6R4 1608 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 ZCCHC11Q5TAX3 1644 aaKnown RBP2.08□□□□□ -2.08
PRPF39-208ENST00000554785 A0A0G2JNJ9 132 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 ARHGAP6O43182 974 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 GPR39O43194 453 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 RAD17O75943 681 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 COMTP21964 271 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 PTX3P26022 381 aaPredicted RBP2.08□□□□□ -2.08
PRPF39-208ENST00000554785 RGS3P49796 1198 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 GUCY2FP51841 1108 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 KIF11P52732 1056 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 ATXN1P54253 815 aaKnown RBP2.08□□□□□ -2.08
PRPF39-208ENST00000554785 KLF10Q13118 480 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 ADAM15Q13444 863 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 NFYCQ13952 458 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 FAM50AQ14320 339 aaKnown RBP2.08□□□□□ -2.08
PRPF39-208ENST00000554785 ATP13A4Q4VNC1 1196 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 USP39Q53GS9 565 aaKnown RBP2.08□□□□□ -2.08
PRPF39-208ENST00000554785 HS1BP3Q53T59 392 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 CREB3L3Q68CJ9 461 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 SPTY2D1Q68D10 685 aaPredicted RBP2.08□□□□□ -2.08
PRPF39-208ENST00000554785 GRAMD4Q6IC98 578 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 CC2D1AQ6P1N0 951 aaPredicted RBP2.08□□□□□ -2.08
PRPF39-208ENST00000554785 USP30Q70CQ3 517 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 SPATS2Q86XZ4 545 aaKnown RBP2.08□□□□□ -2.08
PRPF39-208ENST00000554785 PASD1Q8IV76 773 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 ZNF808Q8N4W9 903 aaPredicted RBP2.08□□□□□ -2.08
PRPF39-208ENST00000554785 EFHBQ8N7U6 833 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 KIAA1958Q8N8K9 716 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 SCYL1Q96KG9 808 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 C12orf65Q9H3J6 166 aaKnown RBP2.08□□□□□ -2.08
PRPF39-208ENST00000554785 PCIF1Q9H4Z3 704 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 SPTLC3Q9NUV7 552 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 H2AFY2Q9P0M6 372 aaPredicted RBP2.08□□□□□ -2.08
PRPF39-208ENST00000554785 Q9UFV3 132 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 HS3ST3A1Q9Y663 406 aa2.08□□□□□ -2.08
PRPF39-208ENST00000554785 SETD1AO15047 1707 aaKnown RBP2.08□□□□□ -2.08
PRPF39-208ENST00000554785 ABCA10Q8WWZ4 1543 aa2.07□□□□□ -2.08
PRPF39-208ENST00000554785 NPIPB8E9PQR5 432 aa2.07□□□□□ -2.08
PRPF39-208ENST00000554785 PPFIA2O75334 1257 aa2.07□□□□□ -2.08
PRPF39-208ENST00000554785 SLC9A1P19634 815 aa2.07□□□□□ -2.08
PRPF39-208ENST00000554785 SDHAP31040 664 aa2.07□□□□□ -2.08
PRPF39-208ENST00000554785 TMPRSS15P98073 1019 aa2.07□□□□□ -2.08
PRPF39-208ENST00000554785 PRKD1Q15139 912 aaPredicted RBP2.07□□□□□ -2.08
PRPF39-208ENST00000554785 ZMAT1Q5H9K5 638 aa2.07□□□□□ -2.08
PRPF39-208ENST00000554785 MAMDC4Q6UXC1 1216 aa2.07□□□□□ -2.08
PRPF39-208ENST00000554785 RNF207Q6ZRF8 634 aa2.07□□□□□ -2.08
PRPF39-208ENST00000554785 CXXC5Q7LFL8 322 aaKnown RBP2.07□□□□□ -2.08
PRPF39-208ENST00000554785 NECAB2Q7Z6G3 386 aa2.07□□□□□ -2.08
PRPF39-208ENST00000554785 ZNF575Q86XF7 245 aa2.07□□□□□ -2.08
PRPF39-208ENST00000554785 IL17DQ8TAD2 202 aa2.07□□□□□ -2.08
PRPF39-208ENST00000554785 STAG1Q8WVM7 1258 aa2.07□□□□□ -2.08
PRPF39-208ENST00000554785 EDAQ92838 391 aa2.07□□□□□ -2.08
PRPF39-208ENST00000554785 ZNF503Q96F45 646 aa2.07□□□□□ -2.08
PRPF39-208ENST00000554785 TMEM176AQ96HP8 235 aa2.07□□□□□ -2.08
PRPF39-208ENST00000554785 ELF4Q99607 663 aaPredicted RBP2.07□□□□□ -2.08
PRPF39-208ENST00000554785 OR10A2Q9H208 303 aa2.07□□□□□ -2.08
PRPF39-208ENST00000554785 EMC7Q9NPA0 242 aa2.07□□□□□ -2.08
PRPF39-208ENST00000554785 ACSS2Q9NR19 701 aa2.07□□□□□ -2.08
PRPF39-208ENST00000554785 TOMM22Q9NS69 142 aa2.07□□□□□ -2.08
PRPF39-208ENST00000554785 TYW1Q9NV66 732 aaKnown RBP2.07□□□□□ -2.08
PRPF39-208ENST00000554785 PLA2G3Q9NZ20 509 aa2.07□□□□□ -2.08
PRPF39-208ENST00000554785 FAM184BQ9ULE4 1060 aa2.07□□□□□ -2.08
PRPF39-208ENST00000554785 ASB1Q9Y576 335 aa2.07□□□□□ -2.08
PRPF39-208ENST00000554785 SPO11Q9Y5K1 396 aa2.07□□□□□ -2.08
PRPF39-208ENST00000554785 SLC30A1Q9Y6M5 507 aa2.07□□□□□ -2.08
PRPF39-208ENST00000554785 WASHC2CQ9Y4E1 1318 aa2.07□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms