RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 DNAJB1P25685 340 aa12.86□□□□□ -0.35
CCDC88C-208ENST00000554165 PHKA2P46019 1235 aa12.86□□□□□ -0.35
CCDC88C-208ENST00000554165 MBTD1Q05BQ5 628 aa12.86□□□□□ -0.35
CCDC88C-208ENST00000554165 MXD4Q14582 209 aaPredicted RBP12.86□□□□□ -0.35
CCDC88C-208ENST00000554165 AMHR2Q16671 573 aa12.86□□□□□ -0.35
CCDC88C-208ENST00000554165 UBXN11Q5T124 520 aa12.86□□□□□ -0.35
CCDC88C-208ENST00000554165 KRT79Q5XKE5 535 aa12.86□□□□□ -0.35
CCDC88C-208ENST00000554165 TWF2Q6IBS0 349 aaKnown RBP12.86□□□□□ -0.35
CCDC88C-208ENST00000554165 SRGAP1Q7Z6B7 1085 aa12.86□□□□□ -0.35
CCDC88C-208ENST00000554165 HSCBQ8IWL3 235 aa12.86□□□□□ -0.35
CCDC88C-208ENST00000554165 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.86□□□□□ -0.35
CCDC88C-208ENST00000554165 HELQQ8TDG4 1101 aa12.86□□□□□ -0.35
CCDC88C-208ENST00000554165 KIFC3Q9BVG8 833 aa12.86□□□□□ -0.35
CCDC88C-208ENST00000554165 RUSC1Q9BVN2 902 aa12.86□□□□□ -0.35
CCDC88C-208ENST00000554165 INO80BQ9C086 356 aaPredicted RBP12.86□□□□□ -0.35
CCDC88C-208ENST00000554165 ELAC1Q9H777 363 aaKnown RBP12.86□□□□□ -0.35
CCDC88C-208ENST00000554165 ALG13Q9NP73 1137 aaKnown RBP12.86□□□□□ -0.35
CCDC88C-208ENST00000554165 AGPAT5Q9NUQ2 364 aa12.86□□□□□ -0.35
CCDC88C-208ENST00000554165 TYW1Q9NV66 732 aaKnown RBP12.86□□□□□ -0.35
CCDC88C-208ENST00000554165 UNC80Q8N2C7 3258 aa12.86□□□□□ -0.35
CCDC88C-208ENST00000554165 LRRIQ4A6NIV6 560 aa12.85□□□□□ -0.35
CCDC88C-208ENST00000554165 INO80B-WBP1J3KQ70 363 aa12.85□□□□□ -0.35
CCDC88C-208ENST00000554165 STX6O43752 255 aa12.85□□□□□ -0.35
CCDC88C-208ENST00000554165 TSPAN1O60635 241 aa12.85□□□□□ -0.35
CCDC88C-208ENST00000554165 MARCKSP29966 332 aaPredicted RBP12.85□□□□□ -0.35
CCDC88C-208ENST00000554165 PBX3P40426 434 aa12.85□□□□□ -0.35
CCDC88C-208ENST00000554165 AFF1P51825 1210 aaKnown RBP12.85□□□□□ -0.35
CCDC88C-208ENST00000554165 PTPAQ15257 358 aa12.85□□□□□ -0.35
CCDC88C-208ENST00000554165 SPECC1Q5M775 1068 aa12.85□□□□□ -0.35
CCDC88C-208ENST00000554165 USP49Q70CQ1 688 aa12.85□□□□□ -0.35
CCDC88C-208ENST00000554165 CDR2LQ86X02 465 aaPredicted RBP12.85□□□□□ -0.35
CCDC88C-208ENST00000554165 EIF2AQ9BY44 585 aaKnown RBP12.85□□□□□ -0.35
CCDC88C-208ENST00000554165 RAB34Q9BZG1 259 aa12.85□□□□□ -0.35
CCDC88C-208ENST00000554165 CWH43Q9H720 699 aa12.85□□□□□ -0.35
CCDC88C-208ENST00000554165 CHST12Q9NRB3 414 aa12.85□□□□□ -0.35
CCDC88C-208ENST00000554165 TTC28Q96AY4 2481 aa12.85□□□□□ -0.35
CCDC88C-208ENST00000554165 KIAA1671Q9BY89 1806 aa12.85□□□□□ -0.35
CCDC88C-208ENST00000554165 C5orf67F2Z3F1 127 aa12.84□□□□□ -0.35
CCDC88C-208ENST00000554165 EYA4O95677 639 aa12.84□□□□□ -0.35
CCDC88C-208ENST00000554165 EDN1P05305 212 aa12.84□□□□□ -0.35
CCDC88C-208ENST00000554165 SSBP05455 408 aaKnown RBP eCLIP12.84□□□□□ -0.35
CCDC88C-208ENST00000554165 ITGB1P05556 798 aa12.84□□□□□ -0.35
CCDC88C-208ENST00000554165 MUTP22033 750 aa12.84□□□□□ -0.35
CCDC88C-208ENST00000554165 TFF2Q03403 129 aa12.84□□□□□ -0.35
CCDC88C-208ENST00000554165 RAD51AP2Q09MP3 1159 aa12.84□□□□□ -0.35
CCDC88C-208ENST00000554165 PKP1Q13835 747 aa12.84□□□□□ -0.35
CCDC88C-208ENST00000554165 CAMK1Q14012 370 aa12.84□□□□□ -0.35
CCDC88C-208ENST00000554165 TFDP1Q14186 410 aa12.84□□□□□ -0.35
CCDC88C-208ENST00000554165 SKIV2LQ15477 1246 aaKnown RBP12.84□□□□□ -0.35
CCDC88C-208ENST00000554165 ARL6IP4Q66PJ3 421 aaKnown RBP12.84□□□□□ -0.35
CCDC88C-208ENST00000554165 IFNLR1Q8IU57 520 aaPredicted RBP12.84□□□□□ -0.35
CCDC88C-208ENST00000554165 DAW1Q8N136 415 aa12.84□□□□□ -0.35
CCDC88C-208ENST00000554165 KLHL23Q8NBE8 558 aa12.84□□□□□ -0.35
CCDC88C-208ENST00000554165 MCPH1Q8NEM0 835 aa12.84□□□□□ -0.35
CCDC88C-208ENST00000554165 MRPL38Q96DV4 380 aaKnown RBP12.84□□□□□ -0.35
CCDC88C-208ENST00000554165 SAMD11Q96NU1 681 aa12.84□□□□□ -0.35
CCDC88C-208ENST00000554165 CLIC6Q96NY7 704 aa12.84□□□□□ -0.35
CCDC88C-208ENST00000554165 USP28Q96RU2 1077 aa12.84□□□□□ -0.35
CCDC88C-208ENST00000554165 TMEM117Q9H0C3 514 aa12.84□□□□□ -0.35
CCDC88C-208ENST00000554165 FAM105AQ9NUU6 356 aa12.84□□□□□ -0.35
CCDC88C-208ENST00000554165 DACT1Q9NYF0 836 aa12.84□□□□□ -0.35
CCDC88C-208ENST00000554165 PLAGL2Q9UPG8 496 aa12.84□□□□□ -0.35
CCDC88C-208ENST00000554165 DNM3Q9UQ16 869 aa12.84□□□□□ -0.35
CCDC88C-208ENST00000554165 HES2Q9Y543 173 aa12.84□□□□□ -0.35
CCDC88C-208ENST00000554165 PCDHB2Q9Y5E7 798 aa12.84□□□□□ -0.35
CCDC88C-208ENST00000554165 PCDHGC5Q9Y5F6 944 aa12.84□□□□□ -0.35
CCDC88C-208ENST00000554165 NPHP3-ACAD11A0A0J9YXS1 232 aa12.83□□□□□ -0.36
CCDC88C-208ENST00000554165 SFI1A8K8P3 1242 aa12.83□□□□□ -0.36
CCDC88C-208ENST00000554165 B4GALT3O60512 393 aa12.83□□□□□ -0.36
CCDC88C-208ENST00000554165 ARF4P18085 180 aaPredicted RBP12.83□□□□□ -0.36
CCDC88C-208ENST00000554165 LIG1P18858 919 aa12.83□□□□□ -0.36
CCDC88C-208ENST00000554165 POU5F1BQ06416 359 aa12.83□□□□□ -0.36
CCDC88C-208ENST00000554165 FOXD4L6Q3SYB3 417 aaPredicted RBP12.83□□□□□ -0.36
CCDC88C-208ENST00000554165 TMEM119Q4V9L6 283 aa12.83□□□□□ -0.36
CCDC88C-208ENST00000554165 HYIQ5T013 277 aa12.83□□□□□ -0.36
CCDC88C-208ENST00000554165 SPOUT1Q5T280 376 aaKnown RBP12.83□□□□□ -0.36
CCDC88C-208ENST00000554165 RINT1Q6NUQ1 792 aa12.83□□□□□ -0.36
CCDC88C-208ENST00000554165 FOXD4L3Q6VB84 417 aaPredicted RBP12.83□□□□□ -0.36
CCDC88C-208ENST00000554165 AGMOQ6ZNB7 445 aa12.83□□□□□ -0.36
CCDC88C-208ENST00000554165 C1orf186Q6ZWK4 172 aa12.83□□□□□ -0.36
CCDC88C-208ENST00000554165 CABP7Q86V35 215 aa12.83□□□□□ -0.36
CCDC88C-208ENST00000554165 COLGALT1Q8NBJ5 622 aa12.83□□□□□ -0.36
CCDC88C-208ENST00000554165 SMG8Q8ND04 991 aaKnown RBP12.83□□□□□ -0.36
CCDC88C-208ENST00000554165 SPPL3Q8TCT6 385 aa12.83□□□□□ -0.36
CCDC88C-208ENST00000554165 EPSTI1Q96J88 318 aa12.83□□□□□ -0.36
CCDC88C-208ENST00000554165 TRAIPQ9BWF2 469 aa12.83□□□□□ -0.36
CCDC88C-208ENST00000554165 CSRNP2Q9H175 543 aa12.83□□□□□ -0.36
CCDC88C-208ENST00000554165 TFIP11Q9UBB9 837 aaKnown RBP12.83□□□□□ -0.36
CCDC88C-208ENST00000554165 INPP5FQ9Y2H2 1132 aa12.83□□□□□ -0.36
CCDC88C-208ENST00000554165 RALGAPA2Q2PPJ7 1873 aa12.82□□□□□ -0.36
CCDC88C-208ENST00000554165 ATG2AQ2TAZ0 1938 aa12.82□□□□□ -0.36
CCDC88C-208ENST00000554165 HIP1RO75146 1068 aa12.82□□□□□ -0.36
CCDC88C-208ENST00000554165 OFD1O75665 1012 aa12.82□□□□□ -0.36
CCDC88C-208ENST00000554165 ERLIN2O94905 339 aa12.82□□□□□ -0.36
CCDC88C-208ENST00000554165 EOMESO95936 686 aa12.82□□□□□ -0.36
CCDC88C-208ENST00000554165 RB1P06400 928 aa12.82□□□□□ -0.36
CCDC88C-208ENST00000554165 HSP90AA1P07900 732 aaKnown RBP12.82□□□□□ -0.36
CCDC88C-208ENST00000554165 IRS1P35568 1242 aa12.82□□□□□ -0.36
CCDC88C-208ENST00000554165 MAPK7Q13164 816 aa12.82□□□□□ -0.36
CCDC88C-208ENST00000554165 KARSQ15046 597 aaKnown RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms