RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 PPP3CAQ08209 521 aa13.91□□□□□ -0.18
VIPAS39-206ENST00000553888 CCDC122Q5T0U0 273 aa13.91□□□□□ -0.18
VIPAS39-206ENST00000553888 METTL7BQ6UX53 244 aa13.91□□□□□ -0.18
VIPAS39-206ENST00000553888 GBP6Q6ZN66 633 aa13.91□□□□□ -0.18
VIPAS39-206ENST00000553888 KIFAP3Q92845 792 aa13.91□□□□□ -0.18
VIPAS39-206ENST00000553888 JAKMIP2Q96AA8 810 aa13.91□□□□□ -0.18
VIPAS39-206ENST00000553888 EIF3CQ99613 913 aaKnown RBP13.91□□□□□ -0.18
VIPAS39-206ENST00000553888 TIPINQ9BVW5 301 aa13.91□□□□□ -0.18
VIPAS39-206ENST00000553888 MAF1Q9H063 256 aa13.91□□□□□ -0.18
VIPAS39-206ENST00000553888 PNMA3Q9UL41 463 aa13.91□□□□□ -0.18
VIPAS39-206ENST00000553888 AKR1B10O60218 316 aa13.91□□□□□ -0.18
VIPAS39-206ENST00000553888 CNGA1P29973 690 aa13.91□□□□□ -0.18
VIPAS39-206ENST00000553888 GTF2A2P52657 109 aa13.91□□□□□ -0.18
VIPAS39-206ENST00000553888 SMTNP53814 917 aa13.91□□□□□ -0.18
VIPAS39-206ENST00000553888 CDK17Q00537 523 aa13.91□□□□□ -0.18
VIPAS39-206ENST00000553888 NEDD9Q14511 834 aa13.91□□□□□ -0.18
VIPAS39-206ENST00000553888 C1orf220Q5T0J3 134 aa13.91□□□□□ -0.18
VIPAS39-206ENST00000553888 IQCEQ6IPM2 695 aa13.91□□□□□ -0.18
VIPAS39-206ENST00000553888 ARMCX2Q7L311 632 aa13.91□□□□□ -0.18
VIPAS39-206ENST00000553888 TRAPPC12Q8WVT3 735 aa13.91□□□□□ -0.18
VIPAS39-206ENST00000553888 ZNF668Q96K58 619 aaPredicted RBP13.91□□□□□ -0.18
VIPAS39-206ENST00000553888 POP1Q99575 1024 aaKnown RBP13.91□□□□□ -0.18
VIPAS39-206ENST00000553888 GPR20Q99678 358 aa13.91□□□□□ -0.18
VIPAS39-206ENST00000553888 MKNK1Q9BUB5 465 aa13.91□□□□□ -0.18
VIPAS39-206ENST00000553888 ST6GALNAC4Q9H4F1 302 aa13.91□□□□□ -0.18
VIPAS39-206ENST00000553888 BRCA2P51587 3418 aa13.9□□□□□ -0.18
VIPAS39-206ENST00000553888 MACROD2A1Z1Q3 448 aa13.9□□□□□ -0.18
VIPAS39-206ENST00000553888 DKC1O60832 514 aaKnown RBP eCLIP13.9□□□□□ -0.18
VIPAS39-206ENST00000553888 EDN1P05305 212 aa13.9□□□□□ -0.18
VIPAS39-206ENST00000553888 GCLMP48507 274 aa13.9□□□□□ -0.18
VIPAS39-206ENST00000553888 NCBP1Q09161 790 aaKnown RBP13.9□□□□□ -0.18
VIPAS39-206ENST00000553888 CELF3Q5SZQ8 465 aaKnown RBP13.9□□□□□ -0.18
VIPAS39-206ENST00000553888 SPRYD7Q5W111 196 aa13.9□□□□□ -0.18
VIPAS39-206ENST00000553888 SLC9A9Q8IVB4 645 aa13.9□□□□□ -0.18
VIPAS39-206ENST00000553888 MAP4K3Q8IVH8 894 aa13.9□□□□□ -0.18
VIPAS39-206ENST00000553888 CCDC170Q8IYT3 715 aa13.9□□□□□ -0.18
VIPAS39-206ENST00000553888 C2orf69Q8N8R5 385 aa13.9□□□□□ -0.18
VIPAS39-206ENST00000553888 GLG1Q92896 1179 aa13.9□□□□□ -0.18
VIPAS39-206ENST00000553888 EMSYQ7Z589 1322 aa13.9□□□□□ -0.18
VIPAS39-206ENST00000553888 ENC1O14682 589 aa13.9□□□□□ -0.18
VIPAS39-206ENST00000553888 TXNP10599 105 aaKnown RBP13.9□□□□□ -0.18
VIPAS39-206ENST00000553888 GLRA2P23416 452 aa13.9□□□□□ -0.18
VIPAS39-206ENST00000553888 ASTE1Q2TB18 679 aaPredicted RBP13.9□□□□□ -0.18
VIPAS39-206ENST00000553888 CCDC62Q6P9F0 684 aa13.9□□□□□ -0.18
VIPAS39-206ENST00000553888 XXYLT1Q8NBI6 393 aa13.9□□□□□ -0.18
VIPAS39-206ENST00000553888 MCPH1Q8NEM0 835 aa13.9□□□□□ -0.18
VIPAS39-206ENST00000553888 GOLGA5Q8TBA6 731 aa13.9□□□□□ -0.18
VIPAS39-206ENST00000553888 SEPT1Q8WYJ6 367 aa13.9□□□□□ -0.18
VIPAS39-206ENST00000553888 IQCDQ96DY2 449 aa13.9□□□□□ -0.18
VIPAS39-206ENST00000553888 SPATA33Q96N06 139 aa13.9□□□□□ -0.18
VIPAS39-206ENST00000553888 CARD6Q9BX69 1037 aa13.9□□□□□ -0.18
VIPAS39-206ENST00000553888 DHX33Q9H6R0 707 aaKnown RBP13.9□□□□□ -0.18
VIPAS39-206ENST00000553888 TOPORSQ9NS56 1045 aaPredicted RBP13.9□□□□□ -0.18
VIPAS39-206ENST00000553888 SLU7O95391 586 aaKnown RBP13.89□□□□□ -0.19
VIPAS39-206ENST00000553888 MYL7Q01449 175 aa13.89□□□□□ -0.19
VIPAS39-206ENST00000553888 ALCAMQ13740 583 aa13.89□□□□□ -0.19
VIPAS39-206ENST00000553888 CCDC127Q96BQ5 260 aa13.89□□□□□ -0.19
VIPAS39-206ENST00000553888 SPAG5Q96R06 1193 aa13.89□□□□□ -0.19
VIPAS39-206ENST00000553888 PCDHA13Q9Y5I0 950 aa13.89□□□□□ -0.19
VIPAS39-206ENST00000553888 LRRIQ4A6NIV6 560 aa13.89□□□□□ -0.19
VIPAS39-206ENST00000553888 NOP56O00567 594 aaKnown RBP13.89□□□□□ -0.19
VIPAS39-206ENST00000553888 TGFB3P10600 412 aa13.89□□□□□ -0.19
VIPAS39-206ENST00000553888 VAMP7P51809 220 aa13.89□□□□□ -0.19
VIPAS39-206ENST00000553888 PPP2R3AQ06190 1150 aa13.89□□□□□ -0.19
VIPAS39-206ENST00000553888 LRRC71Q8N4P6 559 aa13.89□□□□□ -0.19
VIPAS39-206ENST00000553888 NTPCRQ9BSD7 190 aaKnown RBP13.89□□□□□ -0.19
VIPAS39-206ENST00000553888 IFIH1Q9BYX4 1025 aaKnown RBP13.89□□□□□ -0.19
VIPAS39-206ENST00000553888 EDEM3Q9BZQ6 932 aa13.89□□□□□ -0.19
VIPAS39-206ENST00000553888 HAUS4Q9H6D7 363 aa13.89□□□□□ -0.19
VIPAS39-206ENST00000553888 PLCB1Q9NQ66 1216 aa13.89□□□□□ -0.19
VIPAS39-206ENST00000553888 HDAC6Q9UBN7 1215 aa13.89□□□□□ -0.19
VIPAS39-206ENST00000553888 SALL4Q9UJQ4 1053 aa13.89□□□□□ -0.19
VIPAS39-206ENST00000553888 TTLL13PA6NNM8 815 aa13.88□□□□□ -0.19
VIPAS39-206ENST00000553888 HNRNPDLO14979 420 aaKnown RBP13.88□□□□□ -0.19
VIPAS39-206ENST00000553888 GJB1P08034 283 aa13.88□□□□□ -0.19
VIPAS39-206ENST00000553888 KRT83P78385 493 aa13.88□□□□□ -0.19
VIPAS39-206ENST00000553888 ASIC2Q16515 512 aa13.88□□□□□ -0.19
VIPAS39-206ENST00000553888 SPIRE2Q8WWL2 714 aa13.88□□□□□ -0.19
VIPAS39-206ENST00000553888 BICD1Q96G01 975 aa13.88□□□□□ -0.19
VIPAS39-206ENST00000553888 ZBTB45Q96K62 511 aaPredicted RBP13.88□□□□□ -0.19
VIPAS39-206ENST00000553888 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.88□□□□□ -0.19
VIPAS39-206ENST00000553888 INTS2Q9H0H0 1204 aaKnown RBP13.88□□□□□ -0.19
VIPAS39-206ENST00000553888 ARHGAP28Q9P2N2 729 aa13.88□□□□□ -0.19
VIPAS39-206ENST00000553888 SIP14410 1827 aa13.88□□□□□ -0.19
VIPAS39-206ENST00000553888 SERPING1P05155 500 aa13.88□□□□□ -0.19
VIPAS39-206ENST00000553888 KLHL30Q0D2K2 578 aa13.88□□□□□ -0.19
VIPAS39-206ENST00000553888 SPA17Q15506 151 aa13.88□□□□□ -0.19
VIPAS39-206ENST00000553888 TARBP2Q15633 366 aaKnown RBP13.88□□□□□ -0.19
VIPAS39-206ENST00000553888 SNRNP35Q16560 246 aaKnown RBP13.88□□□□□ -0.19
VIPAS39-206ENST00000553888 ZNF792Q3KQV3 632 aa13.88□□□□□ -0.19
VIPAS39-206ENST00000553888 SLC9C1Q4G0N8 1177 aa13.88□□□□□ -0.19
VIPAS39-206ENST00000553888 IRF2BP2Q7Z5L9 587 aa13.88□□□□□ -0.19
VIPAS39-206ENST00000553888 SHCBP1Q8NEM2 672 aa13.88□□□□□ -0.19
VIPAS39-206ENST00000553888 POMGNT1Q8WZA1 660 aa13.88□□□□□ -0.19
VIPAS39-206ENST00000553888 IFT74Q96LB3 600 aa13.88□□□□□ -0.19
VIPAS39-206ENST00000553888 NIFKQ9BYG3 293 aaKnown RBP13.88□□□□□ -0.19
VIPAS39-206ENST00000553888 SUGCTQ9HAC7 445 aa13.88□□□□□ -0.19
VIPAS39-206ENST00000553888 ADAMTS1Q9UHI8 967 aa13.88□□□□□ -0.19
VIPAS39-206ENST00000553888 A0A087X0T9 212 aa13.87□□□□□ -0.19
VIPAS39-206ENST00000553888 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms