RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 KLHL5Q96PQ7 755 aa10.23□□□□□ -0.77
SYNE2-209ENST00000553308 CEP89Q96ST8 783 aa10.23□□□□□ -0.77
SYNE2-209ENST00000553308 TRAIPQ9BWF2 469 aa10.23□□□□□ -0.77
SYNE2-209ENST00000553308 KCNK12Q9HB15 430 aa10.23□□□□□ -0.77
SYNE2-209ENST00000553308 CHST12Q9NRB3 414 aa10.23□□□□□ -0.77
SYNE2-209ENST00000553308 FAM105AQ9NUU6 356 aa10.23□□□□□ -0.77
SYNE2-209ENST00000553308 FBXL21Q9UKT6 434 aa10.23□□□□□ -0.77
SYNE2-209ENST00000553308 PTPRZ1P23471 2315 aaPredicted RBP10.23□□□□□ -0.77
SYNE2-209ENST00000553308 IGKV6-21A0A0C4DH24 114 aa10.22□□□□□ -0.77
SYNE2-209ENST00000553308 N4BP1O75113 896 aaKnown RBP10.22□□□□□ -0.77
SYNE2-209ENST00000553308 DDHD2O94830 711 aa10.22□□□□□ -0.77
SYNE2-209ENST00000553308 STBD1O95210 358 aa10.22□□□□□ -0.77
SYNE2-209ENST00000553308 CNPP09543 421 aaKnown RBP10.22□□□□□ -0.77
SYNE2-209ENST00000553308 CPA1P15085 419 aa10.22□□□□□ -0.77
SYNE2-209ENST00000553308 KLRC2P26717 231 aa10.22□□□□□ -0.77
SYNE2-209ENST00000553308 GNA11P29992 359 aa10.22□□□□□ -0.77
SYNE2-209ENST00000553308 SFNP31947 248 aa10.22□□□□□ -0.77
SYNE2-209ENST00000553308 AFF1P51825 1210 aaKnown RBP10.22□□□□□ -0.77
SYNE2-209ENST00000553308 JAK3P52333 1124 aa10.22□□□□□ -0.77
SYNE2-209ENST00000553308 IRX6P78412 446 aaPredicted RBP10.22□□□□□ -0.77
SYNE2-209ENST00000553308 LETM2Q2VYF4 491 aa10.22□□□□□ -0.77
SYNE2-209ENST00000553308 CATSPER4Q7RTX7 472 aa10.22□□□□□ -0.77
SYNE2-209ENST00000553308 PPFIBP1Q86W92 1011 aa10.22□□□□□ -0.77
SYNE2-209ENST00000553308 RHPN2Q8IUC4 686 aa10.22□□□□□ -0.77
SYNE2-209ENST00000553308 KSR1Q8IVT5 923 aa10.22□□□□□ -0.77
SYNE2-209ENST00000553308 DTWD2Q8NBA8 298 aa10.22□□□□□ -0.77
SYNE2-209ENST00000553308 CCDC12Q8WUD4 166 aaPredicted RBP10.22□□□□□ -0.77
SYNE2-209ENST00000553308 RSPH1Q8WYR4 309 aa10.22□□□□□ -0.77
SYNE2-209ENST00000553308 SLC5A5Q92911 643 aa10.22□□□□□ -0.77
SYNE2-209ENST00000553308 PHKBQ93100 1093 aa10.22□□□□□ -0.77
SYNE2-209ENST00000553308 NLRP4Q96MN2 994 aa10.22□□□□□ -0.77
SYNE2-209ENST00000553308 RIT2Q99578 217 aa10.22□□□□□ -0.77
SYNE2-209ENST00000553308 TEKT3Q9BXF9 490 aa10.22□□□□□ -0.77
SYNE2-209ENST00000553308 NIFKQ9BYG3 293 aaKnown RBP10.22□□□□□ -0.77
SYNE2-209ENST00000553308 FAM186AA6NE01 2351 aa10.22□□□□□ -0.77
SYNE2-209ENST00000553308 CARNS1A5YM72 827 aa10.21□□□□□ -0.77
SYNE2-209ENST00000553308 C2CD2LO14523 706 aa10.21□□□□□ -0.77
SYNE2-209ENST00000553308 PRPF3O43395 683 aaKnown RBP10.21□□□□□ -0.77
SYNE2-209ENST00000553308 ZNF623O75123 536 aa10.21□□□□□ -0.77
SYNE2-209ENST00000553308 PSMD10O75832 226 aa10.21□□□□□ -0.77
SYNE2-209ENST00000553308 CFHP08603 1231 aa10.21□□□□□ -0.77
SYNE2-209ENST00000553308 MYBP10242 640 aa10.21□□□□□ -0.77
SYNE2-209ENST00000553308 SKIP12755 728 aa10.21□□□□□ -0.77
SYNE2-209ENST00000553308 RAB27AP51159 221 aa10.21□□□□□ -0.77
SYNE2-209ENST00000553308 FGD1P98174 961 aa10.21□□□□□ -0.77
SYNE2-209ENST00000553308 TSGA10IPQ3SY00 556 aa10.21□□□□□ -0.77
SYNE2-209ENST00000553308 AGMOQ6ZNB7 445 aa10.21□□□□□ -0.77
SYNE2-209ENST00000553308 C15orf39Q6ZRI6 1047 aa10.21□□□□□ -0.77
SYNE2-209ENST00000553308 MIER3Q7Z3K6 550 aa10.21□□□□□ -0.77
SYNE2-209ENST00000553308 ZNF410Q86VK4 478 aa10.21□□□□□ -0.77
SYNE2-209ENST00000553308 RSAD2Q8WXG1 361 aa10.21□□□□□ -0.77
SYNE2-209ENST00000553308 RTP3Q9BQQ7 232 aa10.21□□□□□ -0.77
SYNE2-209ENST00000553308 EMILIN2Q9BXX0 1053 aa10.21□□□□□ -0.77
SYNE2-209ENST00000553308 MAN1C1Q9NR34 630 aa10.21□□□□□ -0.77
SYNE2-209ENST00000553308 VPS54Q9P1Q0 977 aa10.21□□□□□ -0.77
SYNE2-209ENST00000553308 SUCLA2Q9P2R7 463 aaPredicted RBP10.21□□□□□ -0.77
SYNE2-209ENST00000553308 PCDHB2Q9Y5E7 798 aa10.21□□□□□ -0.77
SYNE2-209ENST00000553308 NID2Q14112 1375 aa10.21□□□□□ -0.78
SYNE2-209ENST00000553308 CCDC196A0A1B0GTZ2 297 aa10.2□□□□□ -0.78
SYNE2-209ENST00000553308 KRBA1A5PL33 1030 aa10.2□□□□□ -0.78
SYNE2-209ENST00000553308 LILRB3O75022 631 aa10.2□□□□□ -0.78
SYNE2-209ENST00000553308 TDP2O95551 362 aa10.2□□□□□ -0.78
SYNE2-209ENST00000553308 DNM2P50570 870 aa10.2□□□□□ -0.78
SYNE2-209ENST00000553308 CDC42EP1Q00587 391 aa10.2□□□□□ -0.78
SYNE2-209ENST00000553308 XKR3Q5GH77 459 aa10.2□□□□□ -0.78
SYNE2-209ENST00000553308 PLA2G4FQ68DD2 849 aa10.2□□□□□ -0.78
SYNE2-209ENST00000553308 SKAP1Q86WV1 359 aa10.2□□□□□ -0.78
SYNE2-209ENST00000553308 CCDC148Q8NFR7 591 aa10.2□□□□□ -0.78
SYNE2-209ENST00000553308 RDM1Q8NG50 284 aa10.2□□□□□ -0.78
SYNE2-209ENST00000553308 URGCPQ8TCY9 931 aa10.2□□□□□ -0.78
SYNE2-209ENST00000553308 BICD2Q8TD16 824 aa10.2□□□□□ -0.78
SYNE2-209ENST00000553308 BRF1Q92994 677 aa10.2□□□□□ -0.78
SYNE2-209ENST00000553308 PGBD4Q96DM1 585 aa10.2□□□□□ -0.78
SYNE2-209ENST00000553308 INO80BQ9C086 356 aaPredicted RBP10.2□□□□□ -0.78
SYNE2-209ENST00000553308 RSAD1Q9HA92 442 aa10.2□□□□□ -0.78
SYNE2-209ENST00000553308 IFT122Q9HBG6 1241 aa10.2□□□□□ -0.78
SYNE2-209ENST00000553308 MRPL17Q9NRX2 175 aaKnown RBP10.2□□□□□ -0.78
SYNE2-209ENST00000553308 AGPAT5Q9NUQ2 364 aa10.2□□□□□ -0.78
SYNE2-209ENST00000553308 MARCH5Q9NX47 278 aa10.2□□□□□ -0.78
SYNE2-209ENST00000553308 IGSF9Q9P2J2 1179 aa10.2□□□□□ -0.78
SYNE2-209ENST00000553308 MYO15AQ9UKN7 3530 aa10.2□□□□□ -0.78
SYNE2-209ENST00000553308 SPTBN4Q9H254 2564 aa10.2□□□□□ -0.78
SYNE2-209ENST00000553308 RIF1Q5UIP0 2472 aaKnown RBP10.19□□□□□ -0.78
SYNE2-209ENST00000553308 CLUHO75153 1309 aa10.19□□□□□ -0.78
SYNE2-209ENST00000553308 DDX11L8A8MPP1 907 aa10.19□□□□□ -0.78
SYNE2-209ENST00000553308 STK25O00506 426 aa10.19□□□□□ -0.78
SYNE2-209ENST00000553308 NRP1O14786 923 aa10.19□□□□□ -0.78
SYNE2-209ENST00000553308 INPPL1O15357 1258 aa10.19□□□□□ -0.78
SYNE2-209ENST00000553308 TEX28O15482 410 aa10.19□□□□□ -0.78
SYNE2-209ENST00000553308 MAFO75444 373 aaPredicted RBP10.19□□□□□ -0.78
SYNE2-209ENST00000553308 POMCP01189 267 aa10.19□□□□□ -0.78
SYNE2-209ENST00000553308 URODP06132 367 aa10.19□□□□□ -0.78
SYNE2-209ENST00000553308 GBP2P32456 591 aaPredicted RBP10.19□□□□□ -0.78
SYNE2-209ENST00000553308 USP11P51784 963 aa10.19□□□□□ -0.78
SYNE2-209ENST00000553308 AK2P54819 239 aa10.19□□□□□ -0.78
SYNE2-209ENST00000553308 AKAP17AQ02040 695 aaKnown RBP10.19□□□□□ -0.78
SYNE2-209ENST00000553308 KRT32Q14532 448 aa10.19□□□□□ -0.78
SYNE2-209ENST00000553308 NTRK3Q16288 839 aa10.19□□□□□ -0.78
SYNE2-209ENST00000553308 UBXN11Q5T124 520 aa10.19□□□□□ -0.78
SYNE2-209ENST00000553308 B3GNT9Q6UX72 402 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms