RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 INPPL1O15357 1258 aa14.61□□□□□ -0.07
VPS29-211ENST00000553128 KINO60870 393 aaKnown RBP14.61□□□□□ -0.07
VPS29-211ENST00000553128 FOSP01100 380 aaPredicted RBP14.61□□□□□ -0.07
VPS29-211ENST00000553128 PSAPP07602 524 aa14.61□□□□□ -0.07
VPS29-211ENST00000553128 SPATA31D3P0C874 917 aa14.61□□□□□ -0.07
VPS29-211ENST00000553128 CHMLP26374 656 aa14.61□□□□□ -0.07
VPS29-211ENST00000553128 RNASELQ05823 741 aaKnown RBP14.61□□□□□ -0.07
VPS29-211ENST00000553128 UGCGQ16739 394 aa14.61□□□□□ -0.07
VPS29-211ENST00000553128 VARS2Q5ST30 1063 aaKnown RBP14.61□□□□□ -0.07
VPS29-211ENST00000553128 JAKMIP3Q5VZ66 844 aa14.61□□□□□ -0.07
VPS29-211ENST00000553128 TWF2Q6IBS0 349 aaKnown RBP14.61□□□□□ -0.07
VPS29-211ENST00000553128 ZNF746Q6NUN9 644 aaPredicted RBP14.61□□□□□ -0.07
VPS29-211ENST00000553128 DCLRE1AQ6PJP8 1040 aa14.61□□□□□ -0.07
VPS29-211ENST00000553128 GLB1LQ6UWU2 654 aa14.61□□□□□ -0.07
VPS29-211ENST00000553128 SPATA31D4Q6ZUB0 917 aa14.61□□□□□ -0.07
VPS29-211ENST00000553128 MICU3Q86XE3 530 aa14.61□□□□□ -0.07
VPS29-211ENST00000553128 PJA1Q8NG27 643 aa14.61□□□□□ -0.07
VPS29-211ENST00000553128 CRYGNQ8WXF5 182 aa14.61□□□□□ -0.07
VPS29-211ENST00000553128 ZNF577Q9BSK1 485 aa14.61□□□□□ -0.07
VPS29-211ENST00000553128 RPP25Q9BUL9 199 aaKnown RBP14.61□□□□□ -0.07
VPS29-211ENST00000553128 PCDHA10Q9Y5I2 948 aa14.61□□□□□ -0.07
VPS29-211ENST00000553128 DCDC2BA2VCK2 349 aa14.6□□□□□ -0.07
VPS29-211ENST00000553128 TEX28O15482 410 aa14.6□□□□□ -0.07
VPS29-211ENST00000553128 OATP04181 439 aa14.6□□□□□ -0.07
VPS29-211ENST00000553128 CALM1P0DP23 149 aa14.6□□□□□ -0.07
VPS29-211ENST00000553128 CALM2P0DP24 149 aa14.6□□□□□ -0.07
VPS29-211ENST00000553128 CALM3P0DP25 149 aa14.6□□□□□ -0.07
VPS29-211ENST00000553128 FUT2Q10981 343 aa14.6□□□□□ -0.07
VPS29-211ENST00000553128 HTR4Q13639 388 aa14.6□□□□□ -0.07
VPS29-211ENST00000553128 MAP4K1Q92918 833 aa14.6□□□□□ -0.07
VPS29-211ENST00000553128 TRAIPQ9BWF2 469 aa14.6□□□□□ -0.07
VPS29-211ENST00000553128 RWDD1Q9H446 243 aaPredicted RBP14.6□□□□□ -0.07
VPS29-211ENST00000553128 CHST12Q9NRB3 414 aa14.6□□□□□ -0.07
VPS29-211ENST00000553128 MRPL17Q9NRX2 175 aaKnown RBP14.6□□□□□ -0.07
VPS29-211ENST00000553128 FAM105AQ9NUU6 356 aa14.6□□□□□ -0.07
VPS29-211ENST00000553128 PIN4Q9Y237 131 aaKnown RBP14.6□□□□□ -0.07
VPS29-211ENST00000553128 MTF2Q9Y483 593 aaPredicted RBP14.6□□□□□ -0.07
VPS29-211ENST00000553128 RBM8AQ9Y5S9 174 aaKnown RBP14.6□□□□□ -0.07
VPS29-211ENST00000553128 SLC12A7Q9Y666 1083 aa14.6□□□□□ -0.07
VPS29-211ENST00000553128 NUMBLQ9Y6R0 609 aa14.6□□□□□ -0.07
VPS29-211ENST00000553128 DOCK8Q8NF50 2099 aa14.6□□□□□ -0.07
VPS29-211ENST00000553128 MAP1BP46821 2468 aaKnown RBP14.59□□□□□ -0.07
VPS29-211ENST00000553128 A0A087WZ62 844 aa14.59□□□□□ -0.07
VPS29-211ENST00000553128 TMEM150BA6NC51 233 aa14.59□□□□□ -0.07
VPS29-211ENST00000553128 ANHXE9PGG2 379 aa14.59□□□□□ -0.07
VPS29-211ENST00000553128 SGSM2O43147 1006 aa14.59□□□□□ -0.07
VPS29-211ENST00000553128 LAMP2P13473 410 aa14.59□□□□□ -0.07
VPS29-211ENST00000553128 MCM5P33992 734 aa14.59□□□□□ -0.07
VPS29-211ENST00000553128 LIFRP42702 1097 aa14.59□□□□□ -0.07
VPS29-211ENST00000553128 AK2P54819 239 aa14.59□□□□□ -0.07
VPS29-211ENST00000553128 PRKCEQ02156 737 aa14.59□□□□□ -0.07
VPS29-211ENST00000553128 AP3B2Q13367 1082 aa14.59□□□□□ -0.07
VPS29-211ENST00000553128 NONOQ15233 471 aaKnown RBP eCLIP14.59□□□□□ -0.07
VPS29-211ENST00000553128 ST3GAL2Q16842 350 aa14.59□□□□□ -0.07
VPS29-211ENST00000553128 PPP1R18Q6NYC8 613 aa14.59□□□□□ -0.07
VPS29-211ENST00000553128 AGMOQ6ZNB7 445 aa14.59□□□□□ -0.07
VPS29-211ENST00000553128 GET4Q7L5D6 327 aaPredicted RBP14.59□□□□□ -0.07
VPS29-211ENST00000553128 SMAP1Q8IYB5 467 aaPredicted RBP14.59□□□□□ -0.07
VPS29-211ENST00000553128 TMTC2Q8N394 836 aa14.59□□□□□ -0.07
VPS29-211ENST00000553128 SMG7Q92540 1137 aaKnown RBP14.59□□□□□ -0.07
VPS29-211ENST00000553128 STAMQ92783 540 aa14.59□□□□□ -0.07
VPS29-211ENST00000553128 FAM167AQ96KS9 214 aa14.59□□□□□ -0.07
VPS29-211ENST00000553128 SH2D3AQ9BRG2 576 aa14.59□□□□□ -0.07
VPS29-211ENST00000553128 FDXACB1Q9BRP7 624 aaPredicted RBP14.59□□□□□ -0.07
VPS29-211ENST00000553128 SLC2A4RGQ9NR83 387 aa14.59□□□□□ -0.07
VPS29-211ENST00000553128 TBC1D22BQ9NU19 505 aa14.59□□□□□ -0.07
VPS29-211ENST00000553128 MARCH5Q9NX47 278 aa14.59□□□□□ -0.07
VPS29-211ENST00000553128 NCDNQ9UBB6 729 aa14.59□□□□□ -0.07
VPS29-211ENST00000553128 SAMM50Q9Y512 469 aa14.59□□□□□ -0.07
VPS29-211ENST00000553128 MYH9P35579 1960 aaKnown RBP14.59□□□□□ -0.07
VPS29-211ENST00000553128 F8W810 466 aa14.58□□□□□ -0.08
VPS29-211ENST00000553128 NRP1O14786 923 aa14.58□□□□□ -0.08
VPS29-211ENST00000553128 CYP3A4P08684 503 aa14.58□□□□□ -0.08
VPS29-211ENST00000553128 TGM1P22735 817 aa14.58□□□□□ -0.08
VPS29-211ENST00000553128 STARD6P59095 220 aa14.58□□□□□ -0.08
VPS29-211ENST00000553128 GPC5P78333 572 aa14.58□□□□□ -0.08
VPS29-211ENST00000553128 TTC22Q5TAA0 569 aa14.58□□□□□ -0.08
VPS29-211ENST00000553128 NXPE3Q969Y0 559 aa14.58□□□□□ -0.08
VPS29-211ENST00000553128 TMEM87BQ96K49 555 aa14.58□□□□□ -0.08
VPS29-211ENST00000553128 RPS6KC1Q96S38 1066 aa14.58□□□□□ -0.08
VPS29-211ENST00000553128 MTA3Q9BTC8 594 aa14.58□□□□□ -0.08
VPS29-211ENST00000553128 GCOM2Q9BZD3 368 aaPredicted RBP14.58□□□□□ -0.08
VPS29-211ENST00000553128 RALYQ9UKM9 306 aaKnown RBP14.58□□□□□ -0.08
VPS29-211ENST00000553128 V9GY48 417 aaPredicted RBP14.58□□□□□ -0.08
VPS29-211ENST00000553128 CHD6Q8TD26 2715 aa14.58□□□□□ -0.08
VPS29-211ENST00000553128 CACNA1GO43497 2377 aa14.58□□□□□ -0.08
VPS29-211ENST00000553128 CHD8Q9HCK8 2581 aa14.57□□□□□ -0.08
VPS29-211ENST00000553128 USP24Q9UPU5 2620 aa14.57□□□□□ -0.08
VPS29-211ENST00000553128 ZNF623O75123 536 aa14.57□□□□□ -0.08
VPS29-211ENST00000553128 POMCP01189 267 aa14.57□□□□□ -0.08
VPS29-211ENST00000553128 SOD2P04179 222 aa14.57□□□□□ -0.08
VPS29-211ENST00000553128 CSTF1Q05048 431 aaKnown RBP14.57□□□□□ -0.08
VPS29-211ENST00000553128 SNW1Q13573 536 aaKnown RBP14.57□□□□□ -0.08
VPS29-211ENST00000553128 TARBP2Q15633 366 aaKnown RBP14.57□□□□□ -0.08
VPS29-211ENST00000553128 KSR1Q8IVT5 923 aa14.57□□□□□ -0.08
VPS29-211ENST00000553128 ZNF710Q8N1W2 664 aa14.57□□□□□ -0.08
VPS29-211ENST00000553128 RUFY2Q8WXA3 655 aa14.57□□□□□ -0.08
VPS29-211ENST00000553128 FGF14Q92915 247 aa14.57□□□□□ -0.08
VPS29-211ENST00000553128 GJA10Q969M2 543 aa14.57□□□□□ -0.08
VPS29-211ENST00000553128 LENG9Q96B70 501 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms