RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 CTTNQ14247 550 aaKnown RBP12.85□□□□□ -0.35
NEK3-204ENST00000552973 IER5LQ5T953 404 aa12.85□□□□□ -0.35
NEK3-204ENST00000552973 NCAPH2Q6IBW4 605 aa12.85□□□□□ -0.35
NEK3-204ENST00000552973 ZNF410Q86VK4 478 aa12.85□□□□□ -0.35
NEK3-204ENST00000552973 VPS52Q8N1B4 723 aa12.85□□□□□ -0.35
NEK3-204ENST00000552973 C12orf76Q8N812 135 aaPredicted RBP12.85□□□□□ -0.35
NEK3-204ENST00000552973 HAS1Q92839 578 aa12.85□□□□□ -0.35
NEK3-204ENST00000552973 CASP10Q92851 521 aa12.85□□□□□ -0.35
NEK3-204ENST00000552973 FAM20AQ96MK3 541 aa12.85□□□□□ -0.35
NEK3-204ENST00000552973 NRDE2Q9H7Z3 1164 aa12.85□□□□□ -0.35
NEK3-204ENST00000552973 IFT122Q9HBG6 1241 aa12.85□□□□□ -0.35
NEK3-204ENST00000552973 KCNMB3Q9NPA1 279 aa12.85□□□□□ -0.35
NEK3-204ENST00000552973 TBC1D13Q9NVG8 400 aa12.85□□□□□ -0.35
NEK3-204ENST00000552973 RGL1Q9NZL6 768 aa12.85□□□□□ -0.35
NEK3-204ENST00000552973 COL4A3BPQ9Y5P4 624 aa12.85□□□□□ -0.35
NEK3-204ENST00000552973 LOXHD1Q8IVV2 1947 aa12.85□□□□□ -0.35
NEK3-204ENST00000552973 PLXNA4Q9HCM2 1894 aa12.85□□□□□ -0.35
NEK3-204ENST00000552973 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.84□□□□□ -0.35
NEK3-204ENST00000552973 PFKFB2O60825 505 aa12.84□□□□□ -0.35
NEK3-204ENST00000552973 OFD1O75665 1012 aa12.84□□□□□ -0.35
NEK3-204ENST00000552973 CTDNEP1O95476 244 aa12.84□□□□□ -0.35
NEK3-204ENST00000552973 HOXB8P17481 243 aaPredicted RBP12.84□□□□□ -0.35
NEK3-204ENST00000552973 XBP1P17861 261 aa12.84□□□□□ -0.35
NEK3-204ENST00000552973 AFF1P51825 1210 aaKnown RBP12.84□□□□□ -0.35
NEK3-204ENST00000552973 POLGP54098 1239 aaPredicted RBP12.84□□□□□ -0.35
NEK3-204ENST00000552973 NHLH1Q02575 133 aa12.84□□□□□ -0.35
NEK3-204ENST00000552973 CYP4A11Q02928 519 aa12.84□□□□□ -0.35
NEK3-204ENST00000552973 RNASELQ05823 741 aaKnown RBP12.84□□□□□ -0.35
NEK3-204ENST00000552973 EPHA7Q15375 998 aa12.84□□□□□ -0.35
NEK3-204ENST00000552973 NOMO2Q5JPE7 1267 aa12.84□□□□□ -0.35
NEK3-204ENST00000552973 PPP4R3AQ6IN85 833 aa12.84□□□□□ -0.35
NEK3-204ENST00000552973 GLB1LQ6UWU2 654 aa12.84□□□□□ -0.35
NEK3-204ENST00000552973 ZNF280BQ86YH2 543 aa12.84□□□□□ -0.35
NEK3-204ENST00000552973 NECAB1Q8N987 351 aa12.84□□□□□ -0.35
NEK3-204ENST00000552973 TMEM87AQ8NBN3 555 aa12.84□□□□□ -0.35
NEK3-204ENST00000552973 BCL7CQ8WUZ0 217 aaPredicted RBP12.84□□□□□ -0.35
NEK3-204ENST00000552973 PRPF31Q8WWY3 499 aaKnown RBP12.84□□□□□ -0.35
NEK3-204ENST00000552973 SLC7A3Q8WY07 619 aa12.84□□□□□ -0.35
NEK3-204ENST00000552973 DYDC2Q96IM9 177 aa12.84□□□□□ -0.35
NEK3-204ENST00000552973 JPH2Q9BR39 696 aaPredicted RBP12.84□□□□□ -0.35
NEK3-204ENST00000552973 MINDY3Q9H8M7 445 aa12.84□□□□□ -0.35
NEK3-204ENST00000552973 ORC3Q9UBD5 711 aaPredicted RBP12.84□□□□□ -0.35
NEK3-204ENST00000552973 DNAJB4Q9UDY4 337 aa12.84□□□□□ -0.35
NEK3-204ENST00000552973 PCDHB2Q9Y5E7 798 aa12.84□□□□□ -0.35
NEK3-204ENST00000552973 EVPLQ92817 2033 aa12.84□□□□□ -0.35
NEK3-204ENST00000552973 FNDC1Q4ZHG4 1894 aaPredicted RBP12.83□□□□□ -0.36
NEK3-204ENST00000552973 B4GALT3O60512 393 aa12.83□□□□□ -0.36
NEK3-204ENST00000552973 DKC1O60832 514 aaKnown RBP eCLIP12.83□□□□□ -0.36
NEK3-204ENST00000552973 SKIP12755 728 aa12.83□□□□□ -0.36
NEK3-204ENST00000552973 YWHABP31946 246 aaKnown RBP12.83□□□□□ -0.36
NEK3-204ENST00000552973 SLC11A1P49279 550 aa12.83□□□□□ -0.36
NEK3-204ENST00000552973 FOSBP53539 338 aa12.83□□□□□ -0.36
NEK3-204ENST00000552973 NR5A1Q13285 461 aa12.83□□□□□ -0.36
NEK3-204ENST00000552973 BMS1Q14692 1282 aaKnown RBP12.83□□□□□ -0.36
NEK3-204ENST00000552973 XKR9Q5GH70 373 aa12.83□□□□□ -0.36
NEK3-204ENST00000552973 RARS2Q5T160 578 aaKnown RBP12.83□□□□□ -0.36
NEK3-204ENST00000552973 CES5AQ6NT32 575 aa12.83□□□□□ -0.36
NEK3-204ENST00000552973 AGMOQ6ZNB7 445 aa12.83□□□□□ -0.36
NEK3-204ENST00000552973 BMP8AQ7Z5Y6 402 aa12.83□□□□□ -0.36
NEK3-204ENST00000552973 ZBTB33Q86T24 672 aa12.83□□□□□ -0.36
NEK3-204ENST00000552973 TPH2Q8IWU9 490 aa12.83□□□□□ -0.36
NEK3-204ENST00000552973 FAM177A1Q8N128 213 aaPredicted RBP12.83□□□□□ -0.36
NEK3-204ENST00000552973 FEZF2Q8TBJ5 459 aa12.83□□□□□ -0.36
NEK3-204ENST00000552973 PGBD4Q96DM1 585 aa12.83□□□□□ -0.36
NEK3-204ENST00000552973 IGSF21Q96ID5 467 aa12.83□□□□□ -0.36
NEK3-204ENST00000552973 LXNQ9BS40 222 aa12.83□□□□□ -0.36
NEK3-204ENST00000552973 TRAIPQ9BWF2 469 aa12.83□□□□□ -0.36
NEK3-204ENST00000552973 ZBP1Q9H171 429 aa12.83□□□□□ -0.36
NEK3-204ENST00000552973 ADAM7Q9H2U9 754 aa12.83□□□□□ -0.36
NEK3-204ENST00000552973 POMKQ9H5K3 350 aa12.83□□□□□ -0.36
NEK3-204ENST00000552973 DHX33Q9H6R0 707 aaKnown RBP12.83□□□□□ -0.36
NEK3-204ENST00000552973 AGPAT5Q9NUQ2 364 aa12.83□□□□□ -0.36
NEK3-204ENST00000552973 A0A087WWV3 80 aa12.82□□□□□ -0.36
NEK3-204ENST00000552973 ZNF623O75123 536 aa12.82□□□□□ -0.36
NEK3-204ENST00000552973 DDHD2O94830 711 aa12.82□□□□□ -0.36
NEK3-204ENST00000552973 POMCP01189 267 aa12.82□□□□□ -0.36
NEK3-204ENST00000552973 SSBP05455 408 aaKnown RBP eCLIP12.82□□□□□ -0.36
NEK3-204ENST00000552973 CTSAP10619 480 aa12.82□□□□□ -0.36
NEK3-204ENST00000552973 FDPSP14324 419 aaKnown RBP12.82□□□□□ -0.36
NEK3-204ENST00000552973 GCFC2P16383 781 aaKnown RBP12.82□□□□□ -0.36
NEK3-204ENST00000552973 EPCAMP16422 314 aa12.82□□□□□ -0.36
NEK3-204ENST00000552973 MRE11P49959 708 aa12.82□□□□□ -0.36
NEK3-204ENST00000552973 RAB27AP51159 221 aa12.82□□□□□ -0.36
NEK3-204ENST00000552973 AK2P54819 239 aa12.82□□□□□ -0.36
NEK3-204ENST00000552973 SIGLEC14Q08ET2 396 aa12.82□□□□□ -0.36
NEK3-204ENST00000552973 LAMTOR4Q0VGL1 99 aa12.82□□□□□ -0.36
NEK3-204ENST00000552973 PTPN21Q16825 1174 aa12.82□□□□□ -0.36
NEK3-204ENST00000552973 TPRNQ4KMQ1 711 aa12.82□□□□□ -0.36
NEK3-204ENST00000552973 OTUD6AQ7L8S5 288 aa12.82□□□□□ -0.36
NEK3-204ENST00000552973 DDX53Q86TM3 631 aaKnown RBP12.82□□□□□ -0.36
NEK3-204ENST00000552973 SUGP1Q8IWZ8 645 aaKnown RBP12.82□□□□□ -0.36
NEK3-204ENST00000552973 C4orf19Q8IY42 314 aa12.82□□□□□ -0.36
NEK3-204ENST00000552973 RNF149Q8NC42 400 aa12.82□□□□□ -0.36
NEK3-204ENST00000552973 PRSS33Q8NF86 280 aa12.82□□□□□ -0.36
NEK3-204ENST00000552973 PSPC1Q8WXF1 523 aaKnown RBP12.82□□□□□ -0.36
NEK3-204ENST00000552973 PHOX2BQ99453 314 aa12.82□□□□□ -0.36
NEK3-204ENST00000552973 KCNH6Q9H252 994 aa12.82□□□□□ -0.36
NEK3-204ENST00000552973 STK36Q9NRP7 1315 aa12.82□□□□□ -0.36
NEK3-204ENST00000552973 C2CD4DB7Z1M9 353 aa12.81□□□□□ -0.36
NEK3-204ENST00000552973 TBX3O15119 743 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms