RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 SREBF1P36956 1147 aa8.36□□□□□ -1.07
LIMA1-216ENST00000552909 PBX1P40424 430 aa8.36□□□□□ -1.07
LIMA1-216ENST00000552909 ARHGAP4P98171 946 aa8.36□□□□□ -1.07
LIMA1-216ENST00000552909 MDM2Q00987 491 aaPredicted RBP8.36□□□□□ -1.07
LIMA1-216ENST00000552909 SP4Q02446 784 aa8.36□□□□□ -1.07
LIMA1-216ENST00000552909 AP3B2Q13367 1082 aa8.36□□□□□ -1.07
LIMA1-216ENST00000552909 DRP2Q13474 957 aa8.36□□□□□ -1.07
LIMA1-216ENST00000552909 LAMC2Q13753 1193 aa8.36□□□□□ -1.07
LIMA1-216ENST00000552909 MORC3Q14149 939 aa8.36□□□□□ -1.07
LIMA1-216ENST00000552909 GNPTABQ3T906 1256 aa8.36□□□□□ -1.07
LIMA1-216ENST00000552909 IQCEQ6IPM2 695 aa8.36□□□□□ -1.07
LIMA1-216ENST00000552909 GALNT17Q6IS24 598 aa8.36□□□□□ -1.07
LIMA1-216ENST00000552909 XRRA1Q6P2D8 792 aa8.36□□□□□ -1.07
LIMA1-216ENST00000552909 CHRDL2Q6WN34 429 aa8.36□□□□□ -1.07
LIMA1-216ENST00000552909 SND1Q7KZF4 910 aaKnown RBP eCLIP8.36□□□□□ -1.07
LIMA1-216ENST00000552909 ANKRD33Q7Z3H0 272 aa8.36□□□□□ -1.07
LIMA1-216ENST00000552909 SLC43A3Q8NBI5 491 aa8.36□□□□□ -1.07
LIMA1-216ENST00000552909 TNFRSF25Q93038 417 aa8.36□□□□□ -1.07
LIMA1-216ENST00000552909 EMID1Q96A84 441 aaPredicted RBP8.36□□□□□ -1.07
LIMA1-216ENST00000552909 SPATA33Q96N06 139 aa8.36□□□□□ -1.07
LIMA1-216ENST00000552909 MLXIPQ9HAP2 919 aa8.36□□□□□ -1.07
LIMA1-216ENST00000552909 SLC40A1Q9NP59 571 aa8.36□□□□□ -1.07
LIMA1-216ENST00000552909 JADE2Q9NQC1 790 aa8.36□□□□□ -1.07
LIMA1-216ENST00000552909 PRDM5Q9NQX1 630 aaPredicted RBP8.36□□□□□ -1.07
LIMA1-216ENST00000552909 PDLIM7Q9NR12 457 aa8.36□□□□□ -1.07
LIMA1-216ENST00000552909 COLQQ9Y215 455 aaPredicted RBP8.36□□□□□ -1.07
LIMA1-216ENST00000552909 PCDHB6Q9Y5E3 794 aa8.36□□□□□ -1.07
LIMA1-216ENST00000552909 COL6A3P12111 3177 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 ITIH6Q6UXX5 1313 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 ENC1O14682 589 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 GYPCP04921 128 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 ZNF286BP0CG31 522 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 KCNA2P16389 499 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 MTMR1Q13613 665 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 PTPAQ15257 358 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 ZNF174Q15697 407 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 CEP55Q53EZ4 464 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 NT5DC1Q5TFE4 455 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 NAA35Q5VZE5 725 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 PARP9Q8IXQ6 854 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 FAM126BQ8IXS8 530 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 PPTC7Q8NI37 304 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 MAGEC3Q8TD91 643 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 GPRASP2Q96D09 838 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 CAPZA3Q96KX2 299 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 MXRA8Q9BRK3 442 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 GLT8D2Q9H1C3 349 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 TRPV6Q9H1D0 765 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 EPN3Q9H201 632 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 KCNH7Q9NS40 1196 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 HDAC6Q9UBN7 1215 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 GUCA1BQ9UMX6 200 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 CCDC194A0A1B0GVG4 234 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 MEIS1O00470 390 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 HSF2BPO75031 334 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 CABYRO75952 493 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 ATP1A1P05023 1023 aaKnown RBP8.35□□□□□ -1.07
LIMA1-216ENST00000552909 MAGEA10P43363 369 aaPredicted RBP8.35□□□□□ -1.07
LIMA1-216ENST00000552909 FXR1P51114 621 aaKnown RBP eCLIP8.35□□□□□ -1.07
LIMA1-216ENST00000552909 DGKDQ16760 1214 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 BRDTQ58F21 947 aaPredicted RBP8.35□□□□□ -1.07
LIMA1-216ENST00000552909 PAPD7Q5XG87 772 aaKnown RBP8.35□□□□□ -1.07
LIMA1-216ENST00000552909 ALS2CLQ60I27 953 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 APTXQ7Z2E3 356 aaKnown RBP8.35□□□□□ -1.07
LIMA1-216ENST00000552909 NLRX1Q86UT6 975 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 DAGLBQ8NCG7 672 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 ZNF473Q8WTR7 871 aaKnown RBP8.35□□□□□ -1.07
LIMA1-216ENST00000552909 RUBCNQ92622 972 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 TOX2Q96NM4 488 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 MED15Q96RN5 788 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 SENP7Q9BQF6 1050 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 MTG1Q9BT17 334 aaPredicted RBP8.35□□□□□ -1.07
LIMA1-216ENST00000552909 HAUS4Q9H6D7 363 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 ACTR5Q9H9F9 607 aaPredicted RBP8.35□□□□□ -1.07
LIMA1-216ENST00000552909 ATP6V0A4Q9HBG4 840 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.35□□□□□ -1.07
LIMA1-216ENST00000552909 ABHD10Q9NUJ1 306 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 TRMT13Q9NUP7 481 aaKnown RBP8.35□□□□□ -1.07
LIMA1-216ENST00000552909 GGA2Q9UJY4 613 aa8.35□□□□□ -1.07
LIMA1-216ENST00000552909 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.35□□□□□ -1.07
LIMA1-216ENST00000552909 TRIP12Q14669 1992 aaPredicted RBP8.34□□□□□ -1.07
LIMA1-216ENST00000552909 IGLV3-22A0A075B6J6 115 aa8.34□□□□□ -1.07
LIMA1-216ENST00000552909 B4GALT4O60513 344 aa8.34□□□□□ -1.07
LIMA1-216ENST00000552909 SRGAP2O75044 1071 aa8.34□□□□□ -1.07
LIMA1-216ENST00000552909 CD4P01730 458 aa8.34□□□□□ -1.07
LIMA1-216ENST00000552909 CLTBP09497 229 aa8.34□□□□□ -1.07
LIMA1-216ENST00000552909 HOXD8P13378 290 aaPredicted RBP8.34□□□□□ -1.07
LIMA1-216ENST00000552909 SLC8A1P32418 973 aa8.34□□□□□ -1.07
LIMA1-216ENST00000552909 LSP1P33241 339 aa8.34□□□□□ -1.07
LIMA1-216ENST00000552909 SARSP49591 514 aaKnown RBP8.34□□□□□ -1.07
LIMA1-216ENST00000552909 TBC1D8BQ0IIM8 1120 aa8.34□□□□□ -1.07
LIMA1-216ENST00000552909 GRIK3Q13003 919 aa8.34□□□□□ -1.07
LIMA1-216ENST00000552909 ITGB3BPQ13352 177 aaPredicted RBP8.34□□□□□ -1.07
LIMA1-216ENST00000552909 NAA25Q14CX7 972 aa8.34□□□□□ -1.07
LIMA1-216ENST00000552909 TTMPQ5BVD1 217 aa8.34□□□□□ -1.07
LIMA1-216ENST00000552909 SPATA1Q5VX52 437 aa8.34□□□□□ -1.07
LIMA1-216ENST00000552909 METTL7BQ6UX53 244 aa8.34□□□□□ -1.07
LIMA1-216ENST00000552909 TRIM50Q86XT4 487 aa8.34□□□□□ -1.07
LIMA1-216ENST00000552909 EHBP1Q8NDI1 1231 aa8.34□□□□□ -1.07
LIMA1-216ENST00000552909 ARMC2Q8NEN0 867 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms