RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 RBM23Q86U06 439 aaKnown RBP12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 SMRP1Q8NCR6 262 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 HELQQ8TDG4 1101 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 DYDC2Q96IM9 177 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 MSLNLQ96KJ4 702 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 CCDC43Q96MW1 224 aaKnown RBP12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 MTRQ99707 1265 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 TCF25Q9BQ70 676 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 LRFN3Q9BTN0 628 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 TTC12Q9H892 705 aaPredicted RBP12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 IFT122Q9HBG6 1241 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 CD320Q9NPF0 282 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 UBN1Q9NPG3 1134 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 ENTPD7Q9NQZ7 604 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 FAM105AQ9NUU6 356 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 RNF19AQ9NV58 838 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 RGL1Q9NZL6 768 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 CLEC1BQ9P126 229 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 HCN4Q9Y3Q4 1203 aa12.14□□□□□ -0.47
VTI1BP3-201ENST00000550220 CNTNAP2Q9UHC6 1331 aa12.13□□□□□ -0.47
VTI1BP3-201ENST00000550220 EVPLQ92817 2033 aa12.13□□□□□ -0.47
VTI1BP3-201ENST00000550220 CSDE1O75534 798 aaKnown RBP12.13□□□□□ -0.47
VTI1BP3-201ENST00000550220 HOXB8P17481 243 aaPredicted RBP12.13□□□□□ -0.47
VTI1BP3-201ENST00000550220 ATF7P17544 494 aaPredicted RBP12.13□□□□□ -0.47
VTI1BP3-201ENST00000550220 AXLP30530 894 aa12.13□□□□□ -0.47
VTI1BP3-201ENST00000550220 GTF2F1P35269 517 aaKnown RBP eCLIP12.13□□□□□ -0.47
VTI1BP3-201ENST00000550220 ERVFC1P60507 584 aa12.13□□□□□ -0.47
VTI1BP3-201ENST00000550220 HMGN5P82970 282 aaKnown RBP12.13□□□□□ -0.47
VTI1BP3-201ENST00000550220 CTTNQ14247 550 aaKnown RBP12.13□□□□□ -0.47
VTI1BP3-201ENST00000550220 SMC1AQ14683 1233 aaKnown RBP12.13□□□□□ -0.47
VTI1BP3-201ENST00000550220 TMC7Q7Z402 723 aa12.13□□□□□ -0.47
VTI1BP3-201ENST00000550220 FERMT3Q86UX7 667 aa12.13□□□□□ -0.47
VTI1BP3-201ENST00000550220 KSR1Q8IVT5 923 aa12.13□□□□□ -0.47
VTI1BP3-201ENST00000550220 SLC39A11Q8N1S5 342 aa12.13□□□□□ -0.47
VTI1BP3-201ENST00000550220 MRPL43Q8N983 215 aaKnown RBP12.13□□□□□ -0.47
VTI1BP3-201ENST00000550220 URGCPQ8TCY9 931 aa12.13□□□□□ -0.47
VTI1BP3-201ENST00000550220 TMEM143Q96AN5 459 aa12.13□□□□□ -0.47
VTI1BP3-201ENST00000550220 CCDC51Q96ER9 411 aa12.13□□□□□ -0.47
VTI1BP3-201ENST00000550220 TMEM169Q96HH4 297 aa12.13□□□□□ -0.47
VTI1BP3-201ENST00000550220 EIF2AK1Q9BQI3 630 aaKnown RBP12.13□□□□□ -0.47
VTI1BP3-201ENST00000550220 SH2B1Q9NRF2 756 aaPredicted RBP12.13□□□□□ -0.47
VTI1BP3-201ENST00000550220 AGPAT5Q9NUQ2 364 aa12.13□□□□□ -0.47
VTI1BP3-201ENST00000550220 PCDHB2Q9Y5E7 798 aa12.13□□□□□ -0.47
VTI1BP3-201ENST00000550220 PRR33A8MZF0 331 aa12.12□□□□□ -0.47
VTI1BP3-201ENST00000550220 LINC01565O15544 149 aa12.12□□□□□ -0.47
VTI1BP3-201ENST00000550220 JAK2O60674 1132 aa12.12□□□□□ -0.47
VTI1BP3-201ENST00000550220 ERLIN2O94905 339 aa12.12□□□□□ -0.47
VTI1BP3-201ENST00000550220 LARGE1O95461 756 aa12.12□□□□□ -0.47
VTI1BP3-201ENST00000550220 TXKP42681 527 aa12.12□□□□□ -0.47
VTI1BP3-201ENST00000550220 RBM25P49756 843 aaKnown RBP12.12□□□□□ -0.47
VTI1BP3-201ENST00000550220 BCAR1P56945 870 aa12.12□□□□□ -0.47
VTI1BP3-201ENST00000550220 CYP4A11Q02928 519 aa12.12□□□□□ -0.47
VTI1BP3-201ENST00000550220 RNASELQ05823 741 aaKnown RBP12.12□□□□□ -0.47
VTI1BP3-201ENST00000550220 CLUL1Q15846 466 aa12.12□□□□□ -0.47
VTI1BP3-201ENST00000550220 NOMO2Q5JPE7 1267 aa12.12□□□□□ -0.47
VTI1BP3-201ENST00000550220 MRPL10Q7Z7H8 261 aaKnown RBP12.12□□□□□ -0.47
VTI1BP3-201ENST00000550220 TMEM87AQ8NBN3 555 aa12.12□□□□□ -0.47
VTI1BP3-201ENST00000550220 RNF149Q8NC42 400 aa12.12□□□□□ -0.47
VTI1BP3-201ENST00000550220 ERMNQ8TAM6 284 aa12.12□□□□□ -0.47
VTI1BP3-201ENST00000550220 CASP10Q92851 521 aa12.12□□□□□ -0.47
VTI1BP3-201ENST00000550220 C8orf76Q96K31 380 aa12.12□□□□□ -0.47
VTI1BP3-201ENST00000550220 MTMR9Q96QG7 549 aa12.12□□□□□ -0.47
VTI1BP3-201ENST00000550220 FOXP1Q9H334 677 aaPredicted RBP12.12□□□□□ -0.47
VTI1BP3-201ENST00000550220 WRAP73Q9P2S5 460 aaPredicted RBP12.12□□□□□ -0.47
VTI1BP3-201ENST00000550220 NLRC5Q86WI3 1866 aa12.11□□□□□ -0.47
VTI1BP3-201ENST00000550220 PER2O15055 1255 aa12.11□□□□□ -0.47
VTI1BP3-201ENST00000550220 OFD1O75665 1012 aa12.11□□□□□ -0.47
VTI1BP3-201ENST00000550220 ALDH2P05091 517 aa12.11□□□□□ -0.47
VTI1BP3-201ENST00000550220 TRAPPC10P48553 1259 aa12.11□□□□□ -0.47
VTI1BP3-201ENST00000550220 PTENP60484 403 aa12.11□□□□□ -0.47
VTI1BP3-201ENST00000550220 TPRNQ4KMQ1 711 aa12.11□□□□□ -0.47
VTI1BP3-201ENST00000550220 PLPP4Q5VZY2 271 aa12.11□□□□□ -0.47
VTI1BP3-201ENST00000550220 NOTUMQ6P988 496 aa12.11□□□□□ -0.47
VTI1BP3-201ENST00000550220 DDX53Q86TM3 631 aaKnown RBP12.11□□□□□ -0.47
VTI1BP3-201ENST00000550220 IFNLR1Q8IU57 520 aaPredicted RBP12.11□□□□□ -0.47
VTI1BP3-201ENST00000550220 HACE1Q8IYU2 909 aa12.11□□□□□ -0.47
VTI1BP3-201ENST00000550220 ZNF579Q8NAF0 562 aaKnown RBP12.11□□□□□ -0.47
VTI1BP3-201ENST00000550220 FAM184AQ8NB25 1140 aa12.11□□□□□ -0.47
VTI1BP3-201ENST00000550220 FAM193BQ96PV7 902 aaPredicted RBP12.11□□□□□ -0.47
VTI1BP3-201ENST00000550220 NACC1Q96RE7 527 aa12.11□□□□□ -0.47
VTI1BP3-201ENST00000550220 TMEM175Q9BSA9 504 aa12.11□□□□□ -0.47
VTI1BP3-201ENST00000550220 PHF7Q9BWX1 381 aaPredicted RBP12.11□□□□□ -0.47
VTI1BP3-201ENST00000550220 NFKBIZQ9BYH8 718 aa12.11□□□□□ -0.47
VTI1BP3-201ENST00000550220 TUFT1Q9NNX1 390 aa12.11□□□□□ -0.47
VTI1BP3-201ENST00000550220 TBC1D13Q9NVG8 400 aa12.11□□□□□ -0.47
VTI1BP3-201ENST00000550220 BARX2Q9UMQ3 279 aaPredicted RBP12.11□□□□□ -0.47
VTI1BP3-201ENST00000550220 IRAK3Q9Y616 596 aa12.11□□□□□ -0.47
VTI1BP3-201ENST00000550220 STK24Q9Y6E0 443 aa12.11□□□□□ -0.47
VTI1BP3-201ENST00000550220 REV3LO60673 3130 aa12.1□□□□□ -0.47
VTI1BP3-201ENST00000550220 FAM205CA6NFA0 338 aa12.1□□□□□ -0.47
VTI1BP3-201ENST00000550220 ZC3H11AO75152 810 aaKnown RBP eCLIP12.1□□□□□ -0.47
VTI1BP3-201ENST00000550220 SEC24BO95487 1268 aa12.1□□□□□ -0.47
VTI1BP3-201ENST00000550220 GLP2RO95838 553 aa12.1□□□□□ -0.47
VTI1BP3-201ENST00000550220 NCLP19338 710 aaKnown RBP12.1□□□□□ -0.47
VTI1BP3-201ENST00000550220 MUTP22033 750 aa12.1□□□□□ -0.47
VTI1BP3-201ENST00000550220 HOXA11P31270 313 aaPredicted RBP12.1□□□□□ -0.47
VTI1BP3-201ENST00000550220 TECP42680 631 aa12.1□□□□□ -0.47
VTI1BP3-201ENST00000550220 RARRES1P49788 294 aa12.1□□□□□ -0.47
VTI1BP3-201ENST00000550220 GNL2Q13823 731 aaKnown RBP12.1□□□□□ -0.47
VTI1BP3-201ENST00000550220 KCNC3Q14003 757 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms