RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 WDR46O15213 610 aaKnown RBP17.48■□□□□ 0.39
CUX1-213ENST00000549414 TRIM50Q86XT4 487 aa17.48■□□□□ 0.39
CUX1-213ENST00000549414 NME8Q8N427 588 aa17.48■□□□□ 0.39
CUX1-213ENST00000549414 KIAA0895Q8NCT3 520 aa17.48■□□□□ 0.39
CUX1-213ENST00000549414 FBXL13Q8NEE6 735 aa17.48■□□□□ 0.39
CUX1-213ENST00000549414 RFFLQ8WZ73 363 aa17.48■□□□□ 0.39
CUX1-213ENST00000549414 HEXIM2Q96MH2 286 aaKnown RBP17.48■□□□□ 0.39
CUX1-213ENST00000549414 MTRQ99707 1265 aa17.48■□□□□ 0.39
CUX1-213ENST00000549414 AP5M1Q9H0R1 490 aa17.48■□□□□ 0.39
CUX1-213ENST00000549414 RPF1Q9H9Y2 349 aaKnown RBP17.48■□□□□ 0.39
CUX1-213ENST00000549414 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.48■□□□□ 0.39
CUX1-213ENST00000549414 PLAGL2Q9UPG8 496 aa17.48■□□□□ 0.39
CUX1-213ENST00000549414 AKAP12Q02952 1782 aa17.48■□□□□ 0.39
CUX1-213ENST00000549414 A0A087X0T9 212 aa17.47■□□□□ 0.39
CUX1-213ENST00000549414 STAMBPO95630 424 aa17.47■□□□□ 0.39
CUX1-213ENST00000549414 FAM228BP0C875 321 aa17.47■□□□□ 0.39
CUX1-213ENST00000549414 ARP10275 920 aa17.47■□□□□ 0.39
CUX1-213ENST00000549414 HSPA6P17066 643 aa17.47■□□□□ 0.39
CUX1-213ENST00000549414 BASP1P80723 227 aaKnown RBP17.47■□□□□ 0.39
CUX1-213ENST00000549414 NFX1Q12986 1120 aaKnown RBP17.47■□□□□ 0.39
CUX1-213ENST00000549414 STYK1Q6J9G0 422 aa17.47■□□□□ 0.39
CUX1-213ENST00000549414 ERICH1Q86X53 443 aa17.47■□□□□ 0.39
CUX1-213ENST00000549414 DEFB129Q9H1M3 183 aa17.47■□□□□ 0.39
CUX1-213ENST00000549414 ZNF568Q3ZCX4 644 aa17.47■□□□□ 0.39
CUX1-213ENST00000549414 RINT1Q6NUQ1 792 aa17.47■□□□□ 0.39
CUX1-213ENST00000549414 TAAR1Q96RJ0 339 aa17.47■□□□□ 0.39
CUX1-213ENST00000549414 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.47■□□□□ 0.391e-6■■■□□ 16.1
CUX1-213ENST00000549414 GMPSP49915 693 aaPredicted RBP17.47■□□□□ 0.39
CUX1-213ENST00000549414 COG2Q14746 738 aa17.47■□□□□ 0.39
CUX1-213ENST00000549414 TMED2Q15363 201 aa17.47■□□□□ 0.39
CUX1-213ENST00000549414 NKX2-3Q8TAU0 364 aa17.47■□□□□ 0.39
CUX1-213ENST00000549414 MYOZ2Q9NPC6 264 aa17.47■□□□□ 0.39
CUX1-213ENST00000549414 GPRC5CQ9NQ84 441 aa17.47■□□□□ 0.39
CUX1-213ENST00000549414 CAPN6Q9Y6Q1 641 aa17.47■□□□□ 0.39
CUX1-213ENST00000549414 RASGRF2O14827 1237 aa17.47■□□□□ 0.39
CUX1-213ENST00000549414 MAN1A1P33908 653 aa17.47■□□□□ 0.39
CUX1-213ENST00000549414 CUL1Q13616 776 aa17.47■□□□□ 0.39
CUX1-213ENST00000549414 GLE1Q53GS7 698 aaKnown RBP17.47■□□□□ 0.39
CUX1-213ENST00000549414 SYT2Q8N9I0 419 aaPredicted RBP17.47■□□□□ 0.39
CUX1-213ENST00000549414 P3H4Q92791 437 aa17.47■□□□□ 0.39
CUX1-213ENST00000549414 MXRA8Q9BRK3 442 aa17.47■□□□□ 0.39
CUX1-213ENST00000549414 NGRNQ9NPE2 291 aaKnown RBP17.47■□□□□ 0.39
CUX1-213ENST00000549414 RBAKQ9NYW8 714 aaPredicted RBP17.47■□□□□ 0.39
CUX1-213ENST00000549414 APEX2Q9UBZ4 518 aa17.47■□□□□ 0.39
CUX1-213ENST00000549414 TTC7AQ9ULT0 858 aaPredicted RBP17.47■□□□□ 0.39
CUX1-213ENST00000549414 NUB1Q9Y5A7 615 aa17.47■□□□□ 0.39
CUX1-213ENST00000549414 ZRANB2O95218 330 aaKnown RBP eCLIP17.46■□□□□ 0.39
CUX1-213ENST00000549414 CENPPQ6IPU0 288 aa17.46■□□□□ 0.39
CUX1-213ENST00000549414 KCNK18Q7Z418 384 aa17.46■□□□□ 0.39
CUX1-213ENST00000549414 PSPC1Q8WXF1 523 aaKnown RBP17.46■□□□□ 0.39
CUX1-213ENST00000549414 AGO2Q9UKV8 859 aaKnown RBP17.46■□□□□ 0.39
CUX1-213ENST00000549414 KNDC1Q76NI1 1749 aa17.46■□□□□ 0.39
CUX1-213ENST00000549414 LTN1O94822 1766 aa17.46■□□□□ 0.39
CUX1-213ENST00000549414 RHBDL3P58872 404 aa17.46■□□□□ 0.39
CUX1-213ENST00000549414 MDM2Q00987 491 aaPredicted RBP17.46■□□□□ 0.39
CUX1-213ENST00000549414 NBPF9Q3BBW0 867 aa17.46■□□□□ 0.39
CUX1-213ENST00000549414 EPC2Q52LR7 807 aa17.46■□□□□ 0.39
CUX1-213ENST00000549414 APOBEC3HQ6NTF7 200 aaKnown RBP17.46■□□□□ 0.39
CUX1-213ENST00000549414 AGPAT1Q99943 283 aa17.46■□□□□ 0.39
CUX1-213ENST00000549414 ZNF667Q5HYK9 610 aa17.46■□□□□ 0.39
CUX1-213ENST00000549414 HP1BP3Q5SSJ5 553 aaPredicted RBP17.46■□□□□ 0.39
CUX1-213ENST00000549414 ARHGEF2Q92974 986 aaKnown RBP17.46■□□□□ 0.39
CUX1-213ENST00000549414 ZKSCAN4Q969J2 545 aaPredicted RBP17.46■□□□□ 0.39
CUX1-213ENST00000549414 TEX13BQ9BXU2 312 aa17.46■□□□□ 0.39
CUX1-213ENST00000549414 MIF4GDA9UHW6 222 aaKnown RBP17.45■□□□□ 0.38
CUX1-213ENST00000549414 ATMINO43313 823 aaPredicted RBP17.45■□□□□ 0.38
CUX1-213ENST00000549414 CCDC117Q8IWD4 279 aaPredicted RBP17.45■□□□□ 0.38
CUX1-213ENST00000549414 HACE1Q8IYU2 909 aa17.45■□□□□ 0.38
CUX1-213ENST00000549414 RNPC3Q96LT9 517 aaKnown RBP17.45■□□□□ 0.38
CUX1-213ENST00000549414 PNMA5Q96PV4 448 aa17.45■□□□□ 0.38
CUX1-213ENST00000549414 PNKPQ96T60 521 aa17.45■□□□□ 0.38
CUX1-213ENST00000549414 ODF2LQ9ULJ1 636 aa17.45■□□□□ 0.38
CUX1-213ENST00000549414 PITPNM2Q9BZ72 1349 aa17.45■□□□□ 0.38
CUX1-213ENST00000549414 TCHHQ07283 1943 aa17.45■□□□□ 0.38
CUX1-213ENST00000549414 NT5DC1Q5TFE4 455 aa17.45■□□□□ 0.38
CUX1-213ENST00000549414 LPAR1Q92633 364 aa17.45■□□□□ 0.38
CUX1-213ENST00000549414 MAGED2Q9UNF1 606 aaPredicted RBP17.45■□□□□ 0.38
CUX1-213ENST00000549414 PDE4DIPQ5VU43 2346 aa17.45■□□□□ 0.38
CUX1-213ENST00000549414 SART1O43290 800 aaKnown RBP17.45■□□□□ 0.38
CUX1-213ENST00000549414 GBP1P32455 592 aa17.45■□□□□ 0.38
CUX1-213ENST00000549414 BBS9Q3SYG4 887 aa17.45■□□□□ 0.38
CUX1-213ENST00000549414 LGSNQ5TDP6 509 aa17.45■□□□□ 0.38
CUX1-213ENST00000549414 SH2D3CQ8N5H7 860 aa17.45■□□□□ 0.38
CUX1-213ENST00000549414 SLC35G2Q8TBE7 412 aa17.45■□□□□ 0.38
CUX1-213ENST00000549414 C1orf54Q8WWF1 131 aa17.45■□□□□ 0.38
CUX1-213ENST00000549414 GGA3Q9NZ52 723 aa17.45■□□□□ 0.38
CUX1-213ENST00000549414 KLHL14Q9P2G3 628 aa17.45■□□□□ 0.38
CUX1-213ENST00000549414 SYNGAP1Q96PV0 1343 aa17.45■□□□□ 0.38
CUX1-213ENST00000549414 PHBP35232 272 aa17.45■□□□□ 0.38
CUX1-213ENST00000549414 HDLBPQ00341 1268 aaKnown RBP17.45■□□□□ 0.38
CUX1-213ENST00000549414 PPP2R5CQ13362 524 aa17.45■□□□□ 0.38
CUX1-213ENST00000549414 ZNF280CQ8ND82 737 aa17.45■□□□□ 0.38
CUX1-213ENST00000549414 STK33Q9BYT3 514 aa17.45■□□□□ 0.38
CUX1-213ENST00000549414 UNC45AQ9H3U1 944 aa17.45■□□□□ 0.38
CUX1-213ENST00000549414 MLXIPLQ9NP71 852 aa17.45■□□□□ 0.38
CUX1-213ENST00000549414 FBXO40Q9UH90 709 aa17.45■□□□□ 0.38
CUX1-213ENST00000549414 LDHAP00338 332 aaKnown RBP17.44■□□□□ 0.38
CUX1-213ENST00000549414 E2F4Q16254 413 aa17.44■□□□□ 0.38
CUX1-213ENST00000549414 SNRNP35Q16560 246 aaKnown RBP17.44■□□□□ 0.38
CUX1-213ENST00000549414 ZNF699Q32M78 642 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms