RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 TOPORSQ9NS56 1045 aaPredicted RBP13.38□□□□□ -0.27
COL4A6-209ENST00000545689 NOP53Q9NZM5 478 aaKnown RBP13.38□□□□□ -0.27
COL4A6-209ENST00000545689 F8W8V4 182 aa13.37□□□□□ -0.27
COL4A6-209ENST00000545689 DEUP1Q05D60 604 aa13.37□□□□□ -0.27
COL4A6-209ENST00000545689 MMS22LQ6ZRQ5 1243 aa13.37□□□□□ -0.27
COL4A6-209ENST00000545689 EPM2AIP1Q7L775 607 aaPredicted RBP13.37□□□□□ -0.27
COL4A6-209ENST00000545689 ABI1Q8IZP0 508 aa13.37□□□□□ -0.27
COL4A6-209ENST00000545689 CPSF3Q9UKF6 684 aaKnown RBP13.37□□□□□ -0.27
COL4A6-209ENST00000545689 ANGPTL3Q9Y5C1 460 aa13.37□□□□□ -0.27
COL4A6-209ENST00000545689 SLC16A4O15374 487 aa13.37□□□□□ -0.27
COL4A6-209ENST00000545689 TAF11Q15544 211 aa13.37□□□□□ -0.27
COL4A6-209ENST00000545689 NBPF3Q9H094 633 aa13.37□□□□□ -0.27
COL4A6-209ENST00000545689 RASA4BC9J798 803 aa13.37□□□□□ -0.27
COL4A6-209ENST00000545689 RASA4O43374 803 aa13.37□□□□□ -0.27
COL4A6-209ENST00000545689 SRGAP2CP0DJJ0 459 aa13.37□□□□□ -0.27
COL4A6-209ENST00000545689 TAC1P20366 129 aa13.37□□□□□ -0.27
COL4A6-209ENST00000545689 SNRPFP62306 86 aaKnown RBP13.37□□□□□ -0.27
COL4A6-209ENST00000545689 DRP2Q13474 957 aa13.37□□□□□ -0.27
COL4A6-209ENST00000545689 C7orf31Q8N865 590 aa13.37□□□□□ -0.27
COL4A6-209ENST00000545689 SYT2Q8N9I0 419 aaPredicted RBP13.37□□□□□ -0.27
COL4A6-209ENST00000545689 PRPF38AQ8NAV1 312 aaKnown RBP13.37□□□□□ -0.27
COL4A6-209ENST00000545689 HSPH1Q92598 858 aa13.37□□□□□ -0.27
COL4A6-209ENST00000545689 ARHGEF1Q92888 912 aaKnown RBP13.37□□□□□ -0.27
COL4A6-209ENST00000545689 KDM6AO15550 1401 aaPredicted RBP13.37□□□□□ -0.27
COL4A6-209ENST00000545689 RTN2O75298 545 aa13.37□□□□□ -0.27
COL4A6-209ENST00000545689 EDRF1Q3B7T1 1238 aa13.37□□□□□ -0.27
COL4A6-209ENST00000545689 E4F1Q66K89 784 aaPredicted RBP13.37□□□□□ -0.27
COL4A6-209ENST00000545689 WDR75Q8IWA0 830 aaKnown RBP13.37□□□□□ -0.27
COL4A6-209ENST00000545689 CRAMP1Q96RY5 1269 aa13.37□□□□□ -0.27
COL4A6-209ENST00000545689 PP2D1A8MPX8 630 aa13.37□□□□□ -0.27
COL4A6-209ENST00000545689 FTLP02792 175 aaPredicted RBP13.37□□□□□ -0.27
COL4A6-209ENST00000545689 RFX5P48382 616 aaPredicted RBP13.37□□□□□ -0.27
COL4A6-209ENST00000545689 KCNQ4P56696 695 aa13.37□□□□□ -0.27
COL4A6-209ENST00000545689 ADCY1Q08828 1119 aa13.37□□□□□ -0.27
COL4A6-209ENST00000545689 FSCBQ5H9T9 825 aa13.37□□□□□ -0.27
COL4A6-209ENST00000545689 DDX27Q96GQ7 796 aaKnown RBP13.37□□□□□ -0.27
COL4A6-209ENST00000545689 ELAC2Q9BQ52 826 aaKnown RBP13.37□□□□□ -0.27
COL4A6-209ENST00000545689 SPDYE16A6NNV3 312 aaPredicted RBP13.36□□□□□ -0.27
COL4A6-209ENST00000545689 CIITAP33076 1130 aa13.36□□□□□ -0.27
COL4A6-209ENST00000545689 SLC18A3Q16572 532 aa13.36□□□□□ -0.27
COL4A6-209ENST00000545689 SPDYE2Q495Y8 402 aa13.36□□□□□ -0.27
COL4A6-209ENST00000545689 SPOPLQ6IQ16 392 aa13.36□□□□□ -0.27
COL4A6-209ENST00000545689 SPATA4Q8NEY3 305 aa13.36□□□□□ -0.27
COL4A6-209ENST00000545689 AGPAT1Q99943 283 aa13.36□□□□□ -0.27
COL4A6-209ENST00000545689 KPNA7A9QM74 516 aa13.36□□□□□ -0.27
COL4A6-209ENST00000545689 WDR46O15213 610 aaKnown RBP13.36□□□□□ -0.27
COL4A6-209ENST00000545689 FCER1AP12319 257 aa13.36□□□□□ -0.27
COL4A6-209ENST00000545689 MRPL40Q9NQ50 206 aaKnown RBP13.36□□□□□ -0.27
COL4A6-209ENST00000545689 SPECC1L-ADORA2AF8WAN1 911 aa13.36□□□□□ -0.27
COL4A6-209ENST00000545689 MYO1CO00159 1063 aa13.36□□□□□ -0.27
COL4A6-209ENST00000545689 TMEM270Q6UE05 265 aa13.36□□□□□ -0.27
COL4A6-209ENST00000545689 NLRP14Q86W24 1093 aa13.36□□□□□ -0.27
COL4A6-209ENST00000545689 DPF2Q92785 391 aa13.36□□□□□ -0.27
COL4A6-209ENST00000545689 FAM213AQ9BRX8 229 aa13.36□□□□□ -0.27
COL4A6-209ENST00000545689 MRPL4Q9BYD3 311 aaKnown RBP13.36□□□□□ -0.27
COL4A6-209ENST00000545689 CFAP73A6NFT4 308 aa13.36□□□□□ -0.27
COL4A6-209ENST00000545689 PPARGP37231 505 aaPredicted RBP13.36□□□□□ -0.27
COL4A6-209ENST00000545689 ANTXR2P58335 489 aa13.36□□□□□ -0.27
COL4A6-209ENST00000545689 MAGOHP61326 146 aaKnown RBP13.36□□□□□ -0.27
COL4A6-209ENST00000545689 APOBEC3FQ8IUX4 373 aaKnown RBP13.36□□□□□ -0.27
COL4A6-209ENST00000545689 STAG2Q8N3U4 1231 aa13.36□□□□□ -0.27
COL4A6-209ENST00000545689 SENP1Q9P0U3 644 aa13.36□□□□□ -0.27
COL4A6-209ENST00000545689 NCK2O43639 380 aa13.36□□□□□ -0.27
COL4A6-209ENST00000545689 MX2P20592 715 aa13.36□□□□□ -0.27
COL4A6-209ENST00000545689 GNA15P30679 374 aa13.36□□□□□ -0.27
COL4A6-209ENST00000545689 ZNF543Q08ER8 600 aa13.36□□□□□ -0.27
COL4A6-209ENST00000545689 RNF139Q8WU17 664 aa13.36□□□□□ -0.27
COL4A6-209ENST00000545689 PSPC1Q8WXF1 523 aaKnown RBP13.36□□□□□ -0.27
COL4A6-209ENST00000545689 NLRP4Q96MN2 994 aa13.36□□□□□ -0.27
COL4A6-209ENST00000545689 RNF146Q9NTX7 359 aa13.36□□□□□ -0.27
COL4A6-209ENST00000545689 MTMR4Q9NYA4 1195 aa13.36□□□□□ -0.27
COL4A6-209ENST00000545689 NYAP2Q9P242 653 aa13.36□□□□□ -0.27
COL4A6-209ENST00000545689 GNAT1P11488 350 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 ART3Q13508 389 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 DAGLBQ8NCG7 672 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 FBXL13Q8NEE6 735 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 SYN2Q92777 582 aaPredicted RBP13.35□□□□□ -0.27
COL4A6-209ENST00000545689 VPS39Q96JC1 886 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 STK33Q9BYT3 514 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 RAVER2Q9HCJ3 691 aaKnown RBP13.35□□□□□ -0.27
COL4A6-209ENST00000545689 CDKL3Q8IVW4 592 aaPredicted RBP13.35□□□□□ -0.27
COL4A6-209ENST00000545689 WDR24Q96S15 920 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 PPCSQ9HAB8 311 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 ORC6Q9Y5N6 252 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 PSMD14O00487 310 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 CHEK2O96017 543 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 AKR1B1P15121 316 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 OSTNP61366 133 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 ESRRGP62508 458 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 FMR1Q06787 632 aaKnown RBP eCLIP13.35□□□□□ -0.27
COL4A6-209ENST00000545689 C16orf86Q6ZW13 317 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 BEST2Q8NFU1 509 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 MAML1Q92585 1016 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 TRAIPQ9BWF2 469 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 POLR3FQ9H1D9 316 aaPredicted RBP13.35□□□□□ -0.27
COL4A6-209ENST00000545689 CPVLQ9H3G5 476 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 TDRD3Q9H7E2 651 aaKnown RBP13.35□□□□□ -0.27
COL4A6-209ENST00000545689 PARVAQ9NVD7 372 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 UVRAGQ9P2Y5 699 aa13.35□□□□□ -0.27
COL4A6-209ENST00000545689 ASAP2O43150 1006 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms