RNA–Protein interactions for RNA: ENST00000544996.1

CCDC78-216, Transcript of coiled-coil domain containing 78, humanhuman

TSL 4

Gene CCDC78, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-216ENST00000544996 ZNF598Q86UK7 904 aaKnown RBP17.43■□□□□ 0.38
CCDC78-216ENST00000544996 KCTD17Q8N5Z5 321 aa17.43■□□□□ 0.38
CCDC78-216ENST00000544996 RSPH1Q8WYR4 309 aa17.43■□□□□ 0.38
CCDC78-216ENST00000544996 P2RX5Q93086 422 aa17.43■□□□□ 0.38
CCDC78-216ENST00000544996 NT5C3AQ9H0P0 336 aa17.43■□□□□ 0.38
CCDC78-216ENST00000544996 LMAN2LQ9H0V9 348 aa17.43■□□□□ 0.38
CCDC78-216ENST00000544996 E9PMD0 336 aa17.42■□□□□ 0.38
CCDC78-216ENST00000544996 ZNF623O75123 536 aa17.42■□□□□ 0.38
CCDC78-216ENST00000544996 PDIA4P13667 645 aaKnown RBP17.42■□□□□ 0.38
CCDC78-216ENST00000544996 UBA7P41226 1012 aa17.42■□□□□ 0.38
CCDC78-216ENST00000544996 MBTD1Q05BQ5 628 aa17.42■□□□□ 0.38
CCDC78-216ENST00000544996 PPP2R5AQ15172 486 aa17.42■□□□□ 0.38
CCDC78-216ENST00000544996 CSPP1Q1MSJ5 1256 aa17.42■□□□□ 0.38
CCDC78-216ENST00000544996 TIGD5Q53EQ6 642 aa17.42■□□□□ 0.38
CCDC78-216ENST00000544996 NOTUMQ6P988 496 aa17.42■□□□□ 0.38
CCDC78-216ENST00000544996 ZBTB8OSQ8IWT0 167 aa17.42■□□□□ 0.38
CCDC78-216ENST00000544996 LRRC43Q8N309 656 aa17.42■□□□□ 0.38
CCDC78-216ENST00000544996 KIFAP3Q92845 792 aa17.42■□□□□ 0.38
CCDC78-216ENST00000544996 PGBD4Q96DM1 585 aa17.42■□□□□ 0.38
CCDC78-216ENST00000544996 CASD1Q96PB1 797 aa17.42■□□□□ 0.38
CCDC78-216ENST00000544996 MMTAG2Q9BU76 263 aaKnown RBP17.42■□□□□ 0.38
CCDC78-216ENST00000544996 MRPL9Q9BYD2 267 aaKnown RBP17.42■□□□□ 0.38
CCDC78-216ENST00000544996 C2orf40Q9H1Z8 148 aa17.42■□□□□ 0.38
CCDC78-216ENST00000544996 ZSCAN16Q9H4T2 348 aaPredicted RBP17.42■□□□□ 0.38
CCDC78-216ENST00000544996 TYW1Q9NV66 732 aaKnown RBP17.42■□□□□ 0.38
CCDC78-216ENST00000544996 THEGQ9P2T0 379 aa17.42■□□□□ 0.38
CCDC78-216ENST00000544996 PCDHB2Q9Y5E7 798 aa17.42■□□□□ 0.38
CCDC78-216ENST00000544996 SLC26A4O43511 780 aa17.41■□□□□ 0.38
CCDC78-216ENST00000544996 TSPAN1O60635 241 aa17.41■□□□□ 0.38
CCDC78-216ENST00000544996 LAG3P18627 525 aa17.41■□□□□ 0.38
CCDC78-216ENST00000544996 HOXA11P31270 313 aaPredicted RBP17.41■□□□□ 0.38
CCDC78-216ENST00000544996 RESTQ13127 1097 aa17.41■□□□□ 0.38
CCDC78-216ENST00000544996 GLB1LQ6UWU2 654 aa17.41■□□□□ 0.38
CCDC78-216ENST00000544996 KLHL23Q8NBE8 558 aa17.41■□□□□ 0.38
CCDC78-216ENST00000544996 CNNM3Q8NE01 707 aa17.41■□□□□ 0.38
CCDC78-216ENST00000544996 HELQQ8TDG4 1101 aa17.41■□□□□ 0.38
CCDC78-216ENST00000544996 CCDC51Q96ER9 411 aa17.41■□□□□ 0.38
CCDC78-216ENST00000544996 IFT74Q96LB3 600 aa17.41■□□□□ 0.38
CCDC78-216ENST00000544996 RNF19AQ9NV58 838 aa17.41■□□□□ 0.38
CCDC78-216ENST00000544996 PLAGL2Q9UPG8 496 aa17.41■□□□□ 0.38
CCDC78-216ENST00000544996 MTMR6Q9Y217 621 aa17.41■□□□□ 0.38
CCDC78-216ENST00000544996 MYO9BQ13459 2157 aa17.4■□□□□ 0.38
CCDC78-216ENST00000544996 ARID2Q68CP9 1835 aa17.4■□□□□ 0.38
CCDC78-216ENST00000544996 GRM6O15303 877 aa17.4■□□□□ 0.38
CCDC78-216ENST00000544996 ATF7P17544 494 aaPredicted RBP17.4■□□□□ 0.38
CCDC78-216ENST00000544996 LONP1P36776 959 aaKnown RBP17.4■□□□□ 0.38
CCDC78-216ENST00000544996 CLLU1OSQ5K130 101 aa17.4■□□□□ 0.38
CCDC78-216ENST00000544996 HYIQ5T013 277 aa17.4■□□□□ 0.38
CCDC78-216ENST00000544996 CABP7Q86V35 215 aa17.4■□□□□ 0.38
CCDC78-216ENST00000544996 DEPTORQ8TB45 409 aa17.4■□□□□ 0.38
CCDC78-216ENST00000544996 ATXN2LQ8WWM7 1075 aaKnown RBP17.4■□□□□ 0.38
CCDC78-216ENST00000544996 CALML4Q96GE6 196 aa17.4■□□□□ 0.38
CCDC78-216ENST00000544996 ALG13Q9NP73 1137 aaKnown RBP17.4■□□□□ 0.38
CCDC78-216ENST00000544996 PRDM6Q9NQX0 595 aa17.4■□□□□ 0.38
CCDC78-216ENST00000544996 COG5Q9UP83 839 aa17.4■□□□□ 0.38
CCDC78-216ENST00000544996 SSBP05455 408 aaKnown RBP eCLIP17.39■□□□□ 0.37
CCDC78-216ENST00000544996 NAMPTP43490 491 aa17.39■□□□□ 0.37
CCDC78-216ENST00000544996 AAK1Q2M2I8 961 aa17.39■□□□□ 0.37
CCDC78-216ENST00000544996 LONRF3Q496Y0 759 aa17.39■□□□□ 0.37
CCDC78-216ENST00000544996 CDCA2Q69YH5 1023 aaPredicted RBP17.39■□□□□ 0.37
CCDC78-216ENST00000544996 THNSL1Q8IYQ7 743 aa17.39■□□□□ 0.37
CCDC78-216ENST00000544996 RASSF8Q8NHQ8 419 aa17.39■□□□□ 0.37
CCDC78-216ENST00000544996 LPPQ93052 612 aa17.39■□□□□ 0.37
CCDC78-216ENST00000544996 CPB2Q96IY4 423 aa17.39■□□□□ 0.37
CCDC78-216ENST00000544996 PRIMPOLQ96LW4 560 aa17.39■□□□□ 0.37
CCDC78-216ENST00000544996 DRC1Q96MC2 740 aa17.39■□□□□ 0.37
CCDC78-216ENST00000544996 TIPINQ9BVW5 301 aa17.39■□□□□ 0.37
CCDC78-216ENST00000544996 TRIM6Q9C030 488 aaPredicted RBP17.39■□□□□ 0.37
CCDC78-216ENST00000544996 CSRNP2Q9H175 543 aa17.39■□□□□ 0.37
CCDC78-216ENST00000544996 NSUN3Q9H649 340 aaKnown RBP17.39■□□□□ 0.37
CCDC78-216ENST00000544996 PRMT7Q9NVM4 692 aaPredicted RBP17.39■□□□□ 0.37
CCDC78-216ENST00000544996 CLIC4Q9Y696 253 aa17.39■□□□□ 0.37
CCDC78-216ENST00000544996 COL4A4P53420 1690 aaPredicted RBP17.39■□□□□ 0.37
CCDC78-216ENST00000544996 ITGB1P05556 798 aa17.38■□□□□ 0.37
CCDC78-216ENST00000544996 ARF4P18085 180 aaPredicted RBP17.38■□□□□ 0.37
CCDC78-216ENST00000544996 EFNA5P52803 228 aa17.38■□□□□ 0.37
CCDC78-216ENST00000544996 MRPS5P82675 430 aaKnown RBP17.38■□□□□ 0.37
CCDC78-216ENST00000544996 MAPK6Q16659 721 aa17.38■□□□□ 0.37
CCDC78-216ENST00000544996 TMEM132AQ24JP5 1023 aa17.38■□□□□ 0.37
CCDC78-216ENST00000544996 UBXN11Q5T124 520 aa17.38■□□□□ 0.37
CCDC78-216ENST00000544996 RINT1Q6NUQ1 792 aa17.38■□□□□ 0.37
CCDC78-216ENST00000544996 LRRC55Q6ZSA7 311 aa17.38■□□□□ 0.37
CCDC78-216ENST00000544996 MRPL10Q7Z7H8 261 aaKnown RBP17.38■□□□□ 0.37
CCDC78-216ENST00000544996 HACE1Q8IYU2 909 aa17.38■□□□□ 0.37
CCDC78-216ENST00000544996 COLGALT1Q8NBJ5 622 aa17.38■□□□□ 0.37
CCDC78-216ENST00000544996 SPPL3Q8TCT6 385 aa17.38■□□□□ 0.37
CCDC78-216ENST00000544996 HLA-CQ95604 372 aa17.38■□□□□ 0.37
CCDC78-216ENST00000544996 ZNF558Q96NG5 402 aa17.38■□□□□ 0.37
CCDC78-216ENST00000544996 PNMA5Q96PV4 448 aa17.38■□□□□ 0.37
CCDC78-216ENST00000544996 PLIN2Q99541 437 aa17.38■□□□□ 0.37
CCDC78-216ENST00000544996 CWH43Q9H720 699 aa17.38■□□□□ 0.37
CCDC78-216ENST00000544996 UBN1Q9NPG3 1134 aa17.38■□□□□ 0.37
CCDC78-216ENST00000544996 A0A1B0GUA9 196 aa17.37■□□□□ 0.37
CCDC78-216ENST00000544996 CARNS1A5YM72 827 aa17.37■□□□□ 0.37
CCDC78-216ENST00000544996 HIP1RO75146 1068 aa17.37■□□□□ 0.37
CCDC78-216ENST00000544996 FGF18O76093 207 aa17.37■□□□□ 0.37
CCDC78-216ENST00000544996 NCLP19338 710 aaKnown RBP17.37■□□□□ 0.37
CCDC78-216ENST00000544996 PPM1AP35813 382 aa17.37■□□□□ 0.37
CCDC78-216ENST00000544996 ALDH7A1P49419 539 aaKnown RBP17.37■□□□□ 0.37
CCDC78-216ENST00000544996 CEBPZQ03701 1054 aaKnown RBP17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms