RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 SHC3Q92529 594 aa9.52□□□□□ -0.88
VPS13D-212ENST00000543766 FAM167AQ96KS9 214 aa9.52□□□□□ -0.88
VPS13D-212ENST00000543766 GMLQ99445 158 aa9.52□□□□□ -0.88
VPS13D-212ENST00000543766 MMRN2Q9H8L6 949 aa9.52□□□□□ -0.88
VPS13D-212ENST00000543766 RNF112Q9ULX5 631 aa9.52□□□□□ -0.88
VPS13D-212ENST00000543766 GSTTP1A0A1W2PQM5 241 aa9.52□□□□□ -0.89
VPS13D-212ENST00000543766 FAM170AA1A519 330 aa9.52□□□□□ -0.89
VPS13D-212ENST00000543766 KRT5P13647 590 aa9.52□□□□□ -0.89
VPS13D-212ENST00000543766 ARHGAP25P42331 645 aa9.52□□□□□ -0.89
VPS13D-212ENST00000543766 KCTD21Q4G0X4 260 aa9.52□□□□□ -0.89
VPS13D-212ENST00000543766 TMTC1Q8IUR5 882 aa9.52□□□□□ -0.89
VPS13D-212ENST00000543766 CSGALNACT2Q8N6G5 542 aa9.52□□□□□ -0.89
VPS13D-212ENST00000543766 NATD1Q8N6N6 113 aa9.52□□□□□ -0.89
VPS13D-212ENST00000543766 EFHD2Q96C19 240 aaPredicted RBP9.52□□□□□ -0.89
VPS13D-212ENST00000543766 LRRC7Q96NW7 1537 aa9.52□□□□□ -0.89
VPS13D-212ENST00000543766 RNF19AQ9NV58 838 aa9.52□□□□□ -0.89
VPS13D-212ENST00000543766 IL1RAPL1Q9NZN1 696 aa9.52□□□□□ -0.89
VPS13D-212ENST00000543766 RIMS2Q9UQ26 1411 aa9.52□□□□□ -0.89
VPS13D-212ENST00000543766 ADCY9O60503 1353 aa9.52□□□□□ -0.89
VPS13D-212ENST00000543766 LACTBL1A8MY62 500 aa9.52□□□□□ -0.89
VPS13D-212ENST00000543766 SYNCRIPO60506 623 aaKnown RBP9.52□□□□□ -0.89
VPS13D-212ENST00000543766 CHRM5P08912 532 aaPredicted RBP9.52□□□□□ -0.89
VPS13D-212ENST00000543766 LINGO3P0C6S8 592 aa9.52□□□□□ -0.89
VPS13D-212ENST00000543766 CCDC166P0CW27 439 aa9.52□□□□□ -0.89
VPS13D-212ENST00000543766 PDE6AP16499 860 aa9.52□□□□□ -0.89
VPS13D-212ENST00000543766 MTHFSP49914 203 aa9.52□□□□□ -0.89
VPS13D-212ENST00000543766 NLRP5P59047 1200 aa9.52□□□□□ -0.89
VPS13D-212ENST00000543766 B2MP61769 119 aa9.52□□□□□ -0.89
VPS13D-212ENST00000543766 C2orf54Q08AI8 447 aa9.52□□□□□ -0.89
VPS13D-212ENST00000543766 PTK2BQ14289 1009 aa9.52□□□□□ -0.89
VPS13D-212ENST00000543766 SF3B4Q15427 424 aaKnown RBP eCLIP9.52□□□□□ -0.899e-10■■■■■ 60
VPS13D-212ENST00000543766 STXBP5Q5T5C0 1151 aa9.52□□□□□ -0.89
VPS13D-212ENST00000543766 TEX9Q8N6V9 391 aa9.52□□□□□ -0.89
VPS13D-212ENST00000543766 MIGA1Q8NAN2 632 aa9.52□□□□□ -0.89
VPS13D-212ENST00000543766 HNRNPLLQ8WVV9 542 aaKnown RBP9.52□□□□□ -0.89
VPS13D-212ENST00000543766 STAMBPL1Q96FJ0 436 aa9.52□□□□□ -0.89
VPS13D-212ENST00000543766 C8orf76Q96K31 380 aa9.52□□□□□ -0.89
VPS13D-212ENST00000543766 PCMTD1Q96MG8 357 aaPredicted RBP9.52□□□□□ -0.89
VPS13D-212ENST00000543766 ATP8A2Q9NTI2 1148 aa9.52□□□□□ -0.89
VPS13D-212ENST00000543766 HYPKQ9NX55 129 aa9.52□□□□□ -0.89
VPS13D-212ENST00000543766 PARP3Q9Y6F1 533 aa9.52□□□□□ -0.89
VPS13D-212ENST00000543766 TSPAN6O43657 245 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 LUC7L3O95232 432 aaKnown RBP9.51□□□□□ -0.89
VPS13D-212ENST00000543766 KRT2P35908 639 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 AK2P54819 239 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 RGS9BPQ6ZS82 235 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 EEPD1Q7L9B9 569 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 GPR161Q8N6U8 529 aaKnown RBP9.51□□□□□ -0.89
VPS13D-212ENST00000543766 ZNF366Q8N895 744 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 ZNF565Q8N9K5 539 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 ZFAND2BQ8WV99 257 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 SYTL4Q96C24 671 aaPredicted RBP9.51□□□□□ -0.89
VPS13D-212ENST00000543766 MPHOSPH8Q99549 860 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 NUP62CLQ9H1M0 184 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 RPRD1BQ9NQG5 326 aaKnown RBP9.51□□□□□ -0.89
VPS13D-212ENST00000543766 HAUS2Q9NVX0 235 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 AKAP7Q9P0M2 348 aaPredicted RBP9.51□□□□□ -0.89
VPS13D-212ENST00000543766 SOX13Q9UN79 622 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 PCDHGB5Q9Y5G0 923 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 NRKQ7Z2Y5 1582 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 ZSCAN5CA6NGD5 496 aaPredicted RBP9.51□□□□□ -0.89
VPS13D-212ENST00000543766 CDK2AP1O14519 115 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 HAT1O14929 419 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 N4BP3O15049 544 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 GNAI1P63096 354 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 KRT85P78386 507 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 NIPAL4Q0D2K0 466 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 TCIRG1Q13488 830 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 TMEM132EQ6IEE7 984 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 TTC6Q86TZ1 520 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 OR8H1Q8NGG4 311 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 XAGE2Q96GT9 111 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 RIOK1Q9BRS2 568 aaKnown RBP9.51□□□□□ -0.89
VPS13D-212ENST00000543766 NTPCRQ9BSD7 190 aaKnown RBP9.51□□□□□ -0.89
VPS13D-212ENST00000543766 CCDC113Q9H0I3 377 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 MCM9Q9NXL9 1143 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 RPH3AQ9Y2J0 694 aaPredicted RBP9.51□□□□□ -0.89
VPS13D-212ENST00000543766 RNGTTO60942 597 aaKnown RBP9.51□□□□□ -0.89
VPS13D-212ENST00000543766 G0S2P27469 103 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 AP3M2P53677 418 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 DNM1Q05193 864 aaKnown RBP9.51□□□□□ -0.89
VPS13D-212ENST00000543766 DHX34Q14147 1143 aaKnown RBP9.51□□□□□ -0.89
VPS13D-212ENST00000543766 WSCD2Q2TBF2 565 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 TTC5Q8N0Z6 440 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 IFT74Q96LB3 600 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 B3GNT4Q9C0J1 378 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 ACAD9Q9H845 621 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 FAM204AQ9H8W3 233 aa9.51□□□□□ -0.89
VPS13D-212ENST00000543766 TDRKHQ9Y2W6 561 aaKnown RBP9.51□□□□□ -0.89
VPS13D-212ENST00000543766 A0A1W2PP64 1363 aa9.5□□□□□ -0.89
VPS13D-212ENST00000543766 GOLGA8QA0A0J9YX86 632 aa9.5□□□□□ -0.89
VPS13D-212ENST00000543766 TNFRSF10AO00220 468 aa9.5□□□□□ -0.89
VPS13D-212ENST00000543766 IYDQ6PHW0 289 aa9.5□□□□□ -0.89
VPS13D-212ENST00000543766 ILDR1Q86SU0 546 aaPredicted RBP9.5□□□□□ -0.89
VPS13D-212ENST00000543766 PASD1Q8IV76 773 aa9.5□□□□□ -0.89
VPS13D-212ENST00000543766 LRRC34Q8IZ02 419 aa9.5□□□□□ -0.89
VPS13D-212ENST00000543766 CLIC6Q96NY7 704 aa9.5□□□□□ -0.89
VPS13D-212ENST00000543766 EYA1Q99502 592 aa9.5□□□□□ -0.89
VPS13D-212ENST00000543766 CCDC28BQ9BUN5 200 aa9.5□□□□□ -0.89
VPS13D-212ENST00000543766 BBS2Q9BXC9 721 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms