RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-222ENST00000543627 CHST12Q9NRB3 414 aa12.24□□□□□ -0.45
DDB1-222ENST00000543627 TMEM161AQ9NX61 479 aa12.24□□□□□ -0.45
DDB1-222ENST00000543627 INPP5FQ9Y2H2 1132 aa12.24□□□□□ -0.45
DDB1-222ENST00000543627 MRPL42Q9Y6G3 142 aaKnown RBP12.24□□□□□ -0.45
DDB1-222ENST00000543627 CDH23Q9H251 3354 aa12.23□□□□□ -0.45
DDB1-222ENST00000543627 HIP1RO75146 1068 aa12.23□□□□□ -0.45
DDB1-222ENST00000543627 KRT18P05783 430 aaKnown RBP12.23□□□□□ -0.45
DDB1-222ENST00000543627 PLA2G4BP0C869 781 aa12.23□□□□□ -0.45
DDB1-222ENST00000543627 ZSCAN22P10073 491 aaPredicted RBP12.23□□□□□ -0.45
DDB1-222ENST00000543627 LONP1P36776 959 aaKnown RBP12.23□□□□□ -0.45
DDB1-222ENST00000543627 PTENP60484 403 aa12.23□□□□□ -0.45
DDB1-222ENST00000543627 CACNB1Q02641 598 aaPredicted RBP12.23□□□□□ -0.45
DDB1-222ENST00000543627 PKP1Q13835 747 aa12.23□□□□□ -0.45
DDB1-222ENST00000543627 BECN1Q14457 450 aa12.23□□□□□ -0.45
DDB1-222ENST00000543627 RINT1Q6NUQ1 792 aa12.23□□□□□ -0.45
DDB1-222ENST00000543627 EP400NLQ6ZTU2 488 aa12.23□□□□□ -0.45
DDB1-222ENST00000543627 CMTR2Q8IYT2 770 aaKnown RBP12.23□□□□□ -0.45
DDB1-222ENST00000543627 SP7Q8TDD2 431 aaPredicted RBP12.23□□□□□ -0.45
DDB1-222ENST00000543627 BSNDQ8WZ55 320 aa12.23□□□□□ -0.45
DDB1-222ENST00000543627 ZNF689Q96CS4 500 aaPredicted RBP12.23□□□□□ -0.45
DDB1-222ENST00000543627 EPSTI1Q96J88 318 aa12.23□□□□□ -0.45
DDB1-222ENST00000543627 KIFC3Q9BVG8 833 aa12.23□□□□□ -0.45
DDB1-222ENST00000543627 RUSC1Q9BVN2 902 aa12.23□□□□□ -0.45
DDB1-222ENST00000543627 TRIM6Q9C030 488 aaPredicted RBP12.23□□□□□ -0.45
DDB1-222ENST00000543627 GBP3Q9H0R5 595 aa12.23□□□□□ -0.45
DDB1-222ENST00000543627 ZHX3Q9H4I2 956 aa12.23□□□□□ -0.45
DDB1-222ENST00000543627 AGPAT5Q9NUQ2 364 aa12.23□□□□□ -0.45
DDB1-222ENST00000543627 FAM105AQ9NUU6 356 aa12.23□□□□□ -0.45
DDB1-222ENST00000543627 TYW1Q9NV66 732 aaKnown RBP12.23□□□□□ -0.45
DDB1-222ENST00000543627 HCSTQ9UBK5 93 aa12.23□□□□□ -0.45
DDB1-222ENST00000543627 USP20Q9Y2K6 914 aa12.23□□□□□ -0.45
DDB1-222ENST00000543627 TTC3P53804 2025 aa12.22□□□□□ -0.45
DDB1-222ENST00000543627 NPHP3-ACAD11A0A0J9YXS1 232 aa12.22□□□□□ -0.45
DDB1-222ENST00000543627 A0A0U1RQF3 1178 aa12.22□□□□□ -0.45
DDB1-222ENST00000543627 B4GALT5O43286 388 aa12.22□□□□□ -0.45
DDB1-222ENST00000543627 HOXA2O43364 376 aa12.22□□□□□ -0.45
DDB1-222ENST00000543627 SKIP12755 728 aa12.22□□□□□ -0.45
DDB1-222ENST00000543627 NCLP19338 710 aaKnown RBP12.22□□□□□ -0.45
DDB1-222ENST00000543627 BMPR1AP36894 532 aa12.22□□□□□ -0.45
DDB1-222ENST00000543627 TXLNAP40222 546 aa12.22□□□□□ -0.45
DDB1-222ENST00000543627 PEX3P56589 373 aa12.22□□□□□ -0.45
DDB1-222ENST00000543627 FAM189BP81408 668 aa12.22□□□□□ -0.45
DDB1-222ENST00000543627 PTPAQ15257 358 aa12.22□□□□□ -0.45
DDB1-222ENST00000543627 KIFAP3Q92845 792 aa12.22□□□□□ -0.45
DDB1-222ENST00000543627 PGBD4Q96DM1 585 aa12.22□□□□□ -0.45
DDB1-222ENST00000543627 AK8Q96MA6 479 aa12.22□□□□□ -0.45
DDB1-222ENST00000543627 SAMD11Q96NU1 681 aa12.22□□□□□ -0.45
DDB1-222ENST00000543627 ELAC1Q9H777 363 aaKnown RBP12.22□□□□□ -0.45
DDB1-222ENST00000543627 ALG13Q9NP73 1137 aaKnown RBP12.22□□□□□ -0.45
DDB1-222ENST00000543627 CCDC39Q9UFE4 941 aa12.22□□□□□ -0.45
DDB1-222ENST00000543627 PCDHB2Q9Y5E7 798 aa12.22□□□□□ -0.45
DDB1-222ENST00000543627 MTCH2Q9Y6C9 303 aa12.22□□□□□ -0.45
DDB1-222ENST00000543627 ARID2Q68CP9 1835 aa12.22□□□□□ -0.45
DDB1-222ENST00000543627 CHD9Q3L8U1 2897 aa12.22□□□□□ -0.45
DDB1-222ENST00000543627 COL6A3P12111 3177 aa12.21□□□□□ -0.45
DDB1-222ENST00000543627 TSPAN1O60635 241 aa12.21□□□□□ -0.45
DDB1-222ENST00000543627 NPTXRO95502 500 aa12.21□□□□□ -0.45
DDB1-222ENST00000543627 EOMESO95936 686 aa12.21□□□□□ -0.45
DDB1-222ENST00000543627 F13A1P00488 732 aa12.21□□□□□ -0.45
DDB1-222ENST00000543627 PRKCBP05771 671 aa12.21□□□□□ -0.45
DDB1-222ENST00000543627 ITGA4P13612 1032 aa12.21□□□□□ -0.45
DDB1-222ENST00000543627 PLCG1P19174 1290 aa12.21□□□□□ -0.45
DDB1-222ENST00000543627 CA8P35219 290 aa12.21□□□□□ -0.45
DDB1-222ENST00000543627 RNASELQ05823 741 aaKnown RBP12.21□□□□□ -0.45
DDB1-222ENST00000543627 MBTD1Q05BQ5 628 aa12.21□□□□□ -0.45
DDB1-222ENST00000543627 MCM6Q14566 821 aa12.21□□□□□ -0.45
DDB1-222ENST00000543627 PPP2R5AQ15172 486 aa12.21□□□□□ -0.45
DDB1-222ENST00000543627 NOTUMQ6P988 496 aa12.21□□□□□ -0.45
DDB1-222ENST00000543627 USP49Q70CQ1 688 aa12.21□□□□□ -0.45
DDB1-222ENST00000543627 GPBP1Q86WP2 473 aa12.21□□□□□ -0.45
DDB1-222ENST00000543627 THNSL1Q8IYQ7 743 aa12.21□□□□□ -0.45
DDB1-222ENST00000543627 MICAL1Q8TDZ2 1067 aa12.21□□□□□ -0.45
DDB1-222ENST00000543627 SYMPKQ92797 1274 aaKnown RBP12.21□□□□□ -0.45
DDB1-222ENST00000543627 CASD1Q96PB1 797 aa12.21□□□□□ -0.45
DDB1-222ENST00000543627 EIF2AQ9BY44 585 aaKnown RBP12.21□□□□□ -0.45
DDB1-222ENST00000543627 TMEM117Q9H0C3 514 aa12.21□□□□□ -0.45
DDB1-222ENST00000543627 C2orf40Q9H1Z8 148 aa12.21□□□□□ -0.45
DDB1-222ENST00000543627 KMT5AQ9NQR1 393 aa12.21□□□□□ -0.45
DDB1-222ENST00000543627 PRDM6Q9NQX0 595 aa12.21□□□□□ -0.45
DDB1-222ENST00000543627 AAASQ9NRG9 546 aa12.21□□□□□ -0.45
DDB1-222ENST00000543627 PARP2Q9UGN5 583 aa12.21□□□□□ -0.45
DDB1-222ENST00000543627 FBXO2Q9UK22 296 aaPredicted RBP12.21□□□□□ -0.45
DDB1-222ENST00000543627 RWDD3Q9Y3V2 267 aa12.21□□□□□ -0.45
DDB1-222ENST00000543627 HES2Q9Y543 173 aa12.21□□□□□ -0.45
DDB1-222ENST00000543627 PCDHB12Q9Y5F1 795 aa12.21□□□□□ -0.45
DDB1-222ENST00000543627 SRPRBQ9Y5M8 271 aaKnown RBP12.21□□□□□ -0.45
DDB1-222ENST00000543627 CHD7Q9P2D1 2997 aa12.2□□□□□ -0.46
DDB1-222ENST00000543627 MEIS3P2A8K0S8 358 aa12.2□□□□□ -0.46
DDB1-222ENST00000543627 H3BNC9 293 aa12.2□□□□□ -0.46
DDB1-222ENST00000543627 K7ERI5 159 aa12.2□□□□□ -0.46
DDB1-222ENST00000543627 TULP1O00294 542 aaPredicted RBP12.2□□□□□ -0.46
DDB1-222ENST00000543627 SPTLC2O15270 562 aa12.2□□□□□ -0.46
DDB1-222ENST00000543627 ARF4P18085 180 aaPredicted RBP12.2□□□□□ -0.46
DDB1-222ENST00000543627 HOXA11P31270 313 aaPredicted RBP12.2□□□□□ -0.46
DDB1-222ENST00000543627 PBX3P40426 434 aa12.2□□□□□ -0.46
DDB1-222ENST00000543627 NAMPTP43490 491 aa12.2□□□□□ -0.46
DDB1-222ENST00000543627 DMP1Q13316 513 aaPredicted RBP12.2□□□□□ -0.46
DDB1-222ENST00000543627 PRPF4BQ13523 1007 aaKnown RBP12.2□□□□□ -0.46
DDB1-222ENST00000543627 SLC39A14Q15043 492 aa12.2□□□□□ -0.46
DDB1-222ENST00000543627 MAPK6Q16659 721 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms