RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 MTMR2Q13614 643 aa10.72□□□□□ -0.69
SS18-205ENST00000542420 C8orf74Q6P047 294 aa10.72□□□□□ -0.69
SS18-205ENST00000542420 HAUS6Q7Z4H7 955 aa10.72□□□□□ -0.69
SS18-205ENST00000542420 MREGQ8N565 214 aa10.72□□□□□ -0.69
SS18-205ENST00000542420 TPCN2Q8NHX9 752 aa10.72□□□□□ -0.69
SS18-205ENST00000542420 NSUN6Q8TEA1 469 aaKnown RBP10.72□□□□□ -0.69
SS18-205ENST00000542420 RFFLQ8WZ73 363 aa10.72□□□□□ -0.69
SS18-205ENST00000542420 GDF3Q9NR23 364 aa10.72□□□□□ -0.69
SS18-205ENST00000542420 RSPH14Q9UHP6 348 aa10.72□□□□□ -0.69
SS18-205ENST00000542420 CNOT7Q9UIV1 285 aaKnown RBP10.72□□□□□ -0.69
SS18-205ENST00000542420 STXBP5LQ9Y2K9 1186 aa10.72□□□□□ -0.69
SS18-205ENST00000542420 COQ4Q9Y3A0 265 aa10.72□□□□□ -0.69
SS18-205ENST00000542420 LRRC37A2A6NM11 1700 aa10.71□□□□□ -0.69
SS18-205ENST00000542420 SFI1A8K8P3 1242 aa10.71□□□□□ -0.69
SS18-205ENST00000542420 DDX3XO00571 662 aaKnown RBP eCLIP10.71□□□□□ -0.691e-15■■■□□ 17.7
SS18-205ENST00000542420 TFRCP02786 760 aaKnown RBP10.71□□□□□ -0.69
SS18-205ENST00000542420 PTPRAP18433 802 aa10.71□□□□□ -0.69
SS18-205ENST00000542420 ICAM3P32942 547 aa10.71□□□□□ -0.69
SS18-205ENST00000542420 C2orf54Q08AI8 447 aa10.71□□□□□ -0.69
SS18-205ENST00000542420 COG2Q14746 738 aa10.71□□□□□ -0.69
SS18-205ENST00000542420 DRAP1Q14919 205 aaPredicted RBP10.71□□□□□ -0.69
SS18-205ENST00000542420 ALS2CLQ60I27 953 aa10.71□□□□□ -0.69
SS18-205ENST00000542420 RHOT2Q8IXI1 618 aa10.71□□□□□ -0.69
SS18-205ENST00000542420 C1orf131Q8NDD1 294 aaKnown RBP10.71□□□□□ -0.69
SS18-205ENST00000542420 FBXL18Q96ME1 805 aa10.71□□□□□ -0.69
SS18-205ENST00000542420 PDGFDQ9GZP0 370 aaPredicted RBP10.71□□□□□ -0.69
SS18-205ENST00000542420 HPCAL4Q9UM19 191 aa10.71□□□□□ -0.69
SS18-205ENST00000542420 ANKRD62A6NC57 917 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 A6NNZ2 444 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 BHMG1C9JSJ3 638 aaPredicted RBP10.7□□□□□ -0.7
SS18-205ENST00000542420 BUB1O43683 1085 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 ZC3H11AO75152 810 aaKnown RBP eCLIP10.7□□□□□ -0.7
SS18-205ENST00000542420 MTA2O94776 668 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 PSAPP07602 524 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 GARTP22102 1010 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 CYP2J2P51589 502 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 PAK2Q13177 524 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 GNPTABQ3T906 1256 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 TUBB8Q3ZCM7 444 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 SLC30A10Q6XR72 485 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 ENOSF1Q7L5Y1 443 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 USP38Q8NB14 1042 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 CHST13Q8NET6 341 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 DNERQ8NFT8 737 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 OLIG1Q8TAK6 271 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 DHX38Q92620 1227 aaKnown RBP10.7□□□□□ -0.7
SS18-205ENST00000542420 GPR88Q9GZN0 384 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 ACAD9Q9H845 621 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 KIAA1586Q9HCI6 787 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 PDE11AQ9HCR9 933 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 HOXC10Q9NYD6 342 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 HSPBP1Q9NZL4 362 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 SBF1O95248 1867 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 ZBTB39O15060 712 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 DGAT1O75907 488 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 NR3C2P08235 984 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 ZBTB48P10074 688 aaPredicted RBP10.7□□□□□ -0.7
SS18-205ENST00000542420 DMP1Q13316 513 aaPredicted RBP10.7□□□□□ -0.7
SS18-205ENST00000542420 CATSPERGQ6ZRH7 1159 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.7□□□□□ -0.7
SS18-205ENST00000542420 CPXCR1Q8N123 301 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 WHAMMQ8TF30 809 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 SCFD2Q8WU76 684 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 TEX13BQ9BXU2 312 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 SLITRK6Q9H5Y7 841 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 PDLIM7Q9NR12 457 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.7□□□□□ -0.7
SS18-205ENST00000542420 ZNF214Q9UL59 606 aaPredicted RBP10.7□□□□□ -0.7
SS18-205ENST00000542420 SAMM50Q9Y512 469 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 ZC3H4Q9UPT8 1303 aaKnown RBP10.7□□□□□ -0.7
SS18-205ENST00000542420 OTOFQ9HC10 1997 aa10.7□□□□□ -0.7
SS18-205ENST00000542420 LOC102724159A0A0B4J2E5 919 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 LRRIQ3A6PVS8 624 aaPredicted RBP10.69□□□□□ -0.7
SS18-205ENST00000542420 RPS6KA5O75582 802 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 GZMAP12544 262 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 KCNA2P16389 499 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 HSPA6P17066 643 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 ERCC3P19447 782 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 EIF2AK2P19525 551 aaKnown RBP10.69□□□□□ -0.7
SS18-205ENST00000542420 PWP2Q15269 919 aaKnown RBP10.69□□□□□ -0.7
SS18-205ENST00000542420 SUPT20HL1Q3ZLR7 823 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 CBWD6Q4V339 395 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 CBWD3Q5JTY5 395 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 CBWD5Q5RIA9 395 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 C11orf63Q6NUN7 778 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 LNX1Q8TBB1 728 aaPredicted RBP10.69□□□□□ -0.7
SS18-205ENST00000542420 CTNNBL1Q8WYA6 563 aaPredicted RBP10.69□□□□□ -0.7
SS18-205ENST00000542420 ATG4CQ96DT6 458 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 HES6Q96HZ4 224 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 NAP1L3Q99457 506 aaPredicted RBP10.69□□□□□ -0.7
SS18-205ENST00000542420 TMOD4Q9NZQ9 345 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 FBXO40Q9UH90 709 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 TBX20Q9UMR3 447 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 DOCK5Q9H7D0 1870 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 IGSF9BQ9UPX0 1349 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 ZNFX1Q9P2E3 1918 aaKnown RBP10.69□□□□□ -0.7
SS18-205ENST00000542420 H3BQF6 201 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 PGRMC1O00264 195 aaKnown RBP10.69□□□□□ -0.7
SS18-205ENST00000542420 BACH1O14867 736 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 TNFAIP3P21580 790 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms