RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 SLC22A17Q8WUG5 538 aa17.38■□□□□ 0.37
CLSTN3-213ENST00000541953 TMEM169Q96HH4 297 aa17.38■□□□□ 0.37
CLSTN3-213ENST00000541953 IGSF21Q96ID5 467 aa17.38■□□□□ 0.37
CLSTN3-213ENST00000541953 RIPOR3Q96MK2 946 aa17.38■□□□□ 0.37
CLSTN3-213ENST00000541953 NLRP4Q96MN2 994 aa17.38■□□□□ 0.37
CLSTN3-213ENST00000541953 MRPL9Q9BYD2 267 aaKnown RBP17.38■□□□□ 0.37
CLSTN3-213ENST00000541953 IFT122Q9HBG6 1241 aa17.38■□□□□ 0.37
CLSTN3-213ENST00000541953 SH3GLB2Q9NR46 395 aa17.38■□□□□ 0.37
CLSTN3-213ENST00000541953 GJB4Q9NTQ9 266 aa17.38■□□□□ 0.37
CLSTN3-213ENST00000541953 FAM105AQ9NUU6 356 aa17.38■□□□□ 0.37
CLSTN3-213ENST00000541953 DACT1Q9NYF0 836 aa17.38■□□□□ 0.37
CLSTN3-213ENST00000541953 VAV3Q9UKW4 847 aa17.38■□□□□ 0.37
CLSTN3-213ENST00000541953 KCNJ14Q9UNX9 436 aa17.38■□□□□ 0.37
CLSTN3-213ENST00000541953 WDR87Q6ZQQ6 2873 aa17.38■□□□□ 0.37
CLSTN3-213ENST00000541953 DCHS1Q96JQ0 3298 aa17.38■□□□□ 0.37
CLSTN3-213ENST00000541953 DDX11L8A8MPP1 907 aa17.37■□□□□ 0.37
CLSTN3-213ENST00000541953 H0Y858 1186 aa17.37■□□□□ 0.37
CLSTN3-213ENST00000541953 OFD1O75665 1012 aa17.37■□□□□ 0.37
CLSTN3-213ENST00000541953 CTSAP10619 480 aa17.37■□□□□ 0.37
CLSTN3-213ENST00000541953 ALDH7A1P49419 539 aaKnown RBP17.37■□□□□ 0.37
CLSTN3-213ENST00000541953 STK3Q13188 491 aa17.37■□□□□ 0.37
CLSTN3-213ENST00000541953 INF2Q27J81 1249 aa17.37■□□□□ 0.37
CLSTN3-213ENST00000541953 AGMOQ6ZNB7 445 aa17.37■□□□□ 0.37
CLSTN3-213ENST00000541953 BLIDQ8IZY5 108 aa17.37■□□□□ 0.37
CLSTN3-213ENST00000541953 TMEM105Q8N8V8 129 aa17.37■□□□□ 0.37
CLSTN3-213ENST00000541953 RDM1Q8NG50 284 aa17.37■□□□□ 0.37
CLSTN3-213ENST00000541953 TRAIPQ9BWF2 469 aa17.37■□□□□ 0.37
CLSTN3-213ENST00000541953 GBP3Q9H0R5 595 aa17.37■□□□□ 0.37
CLSTN3-213ENST00000541953 CHST12Q9NRB3 414 aa17.37■□□□□ 0.37
CLSTN3-213ENST00000541953 DDHD2O94830 711 aa17.36■□□□□ 0.37
CLSTN3-213ENST00000541953 SFPQP23246 707 aaKnown RBP eCLIP17.36■□□□□ 0.37
CLSTN3-213ENST00000541953 ITIH3Q06033 890 aa17.36■□□□□ 0.37
CLSTN3-213ENST00000541953 PTPN14Q15678 1187 aa17.36■□□□□ 0.37
CLSTN3-213ENST00000541953 TPRNQ4KMQ1 711 aa17.36■□□□□ 0.37
CLSTN3-213ENST00000541953 NOMO2Q5JPE7 1267 aa17.36■□□□□ 0.37
CLSTN3-213ENST00000541953 UBXN11Q5T124 520 aa17.36■□□□□ 0.37
CLSTN3-213ENST00000541953 KIAA1841Q6NSI8 718 aa17.36■□□□□ 0.37
CLSTN3-213ENST00000541953 TMC5Q6UXY8 1006 aa17.36■□□□□ 0.37
CLSTN3-213ENST00000541953 RUFY3Q7L099 469 aa17.36■□□□□ 0.37
CLSTN3-213ENST00000541953 CATSPER4Q7RTX7 472 aa17.36■□□□□ 0.37
CLSTN3-213ENST00000541953 DDX53Q86TM3 631 aaKnown RBP17.36■□□□□ 0.37
CLSTN3-213ENST00000541953 ZNF410Q86VK4 478 aa17.36■□□□□ 0.37
CLSTN3-213ENST00000541953 ZNF710Q8N1W2 664 aa17.36■□□□□ 0.37
CLSTN3-213ENST00000541953 DAGLBQ8NCG7 672 aa17.36■□□□□ 0.37
CLSTN3-213ENST00000541953 ZSWIM6Q9HCJ5 1215 aa17.36■□□□□ 0.37
CLSTN3-213ENST00000541953 SORCS3Q9UPU3 1222 aa17.36■□□□□ 0.37
CLSTN3-213ENST00000541953 NR2E1Q9Y466 385 aa17.36■□□□□ 0.37
CLSTN3-213ENST00000541953 FAM205CA6NFA0 338 aa17.35■□□□□ 0.37
CLSTN3-213ENST00000541953 SSBP05455 408 aaKnown RBP eCLIP17.35■□□□□ 0.37
CLSTN3-213ENST00000541953 SSRP1Q08945 709 aaKnown RBP17.35■□□□□ 0.37
CLSTN3-213ENST00000541953 EARS2Q5JPH6 523 aaKnown RBP17.35■□□□□ 0.37
CLSTN3-213ENST00000541953 CES5AQ6NT32 575 aa17.35■□□□□ 0.37
CLSTN3-213ENST00000541953 OXER1Q8TDS5 423 aa17.35■□□□□ 0.37
CLSTN3-213ENST00000541953 TMEM143Q96AN5 459 aa17.35■□□□□ 0.37
CLSTN3-213ENST00000541953 KCNMB3Q9NPA1 279 aa17.35■□□□□ 0.37
CLSTN3-213ENST00000541953 CYP26B1Q9NR63 512 aa17.35■□□□□ 0.37
CLSTN3-213ENST00000541953 AGPAT5Q9NUQ2 364 aa17.35■□□□□ 0.37
CLSTN3-213ENST00000541953 LIMD1Q9UGP4 676 aa17.35■□□□□ 0.37
CLSTN3-213ENST00000541953 DDX25Q9UHL0 483 aaKnown RBP17.35■□□□□ 0.37
CLSTN3-213ENST00000541953 PCDHB2Q9Y5E7 798 aa17.35■□□□□ 0.37
CLSTN3-213ENST00000541953 IRAK3Q9Y616 596 aa17.35■□□□□ 0.37
CLSTN3-213ENST00000541953 F8W810 466 aa17.34■□□□□ 0.37
CLSTN3-213ENST00000541953 ZBTB39O15060 712 aa17.34■□□□□ 0.37
CLSTN3-213ENST00000541953 ZNF623O75123 536 aa17.34■□□□□ 0.37
CLSTN3-213ENST00000541953 DEXIO95424 95 aa17.34■□□□□ 0.37
CLSTN3-213ENST00000541953 HOXA11P31270 313 aaPredicted RBP17.34■□□□□ 0.37
CLSTN3-213ENST00000541953 MTMR3Q13615 1198 aa17.34■□□□□ 0.37
CLSTN3-213ENST00000541953 LETM2Q2VYF4 491 aa17.34■□□□□ 0.37
CLSTN3-213ENST00000541953 GLB1LQ6UWU2 654 aa17.34■□□□□ 0.37
CLSTN3-213ENST00000541953 HAS1Q92839 578 aa17.34■□□□□ 0.37
CLSTN3-213ENST00000541953 NECTIN4Q96NY8 510 aa17.34■□□□□ 0.37
CLSTN3-213ENST00000541953 MARCH5Q9NX47 278 aa17.34■□□□□ 0.37
CLSTN3-213ENST00000541953 COL4A3BPQ9Y5P4 624 aa17.34■□□□□ 0.37
CLSTN3-213ENST00000541953 LILRB3O75022 631 aa17.33■□□□□ 0.36
CLSTN3-213ENST00000541953 PSMA5P28066 241 aa17.33■□□□□ 0.36
CLSTN3-213ENST00000541953 MTHFRP42898 656 aa17.33■□□□□ 0.36
CLSTN3-213ENST00000541953 PSMC5P62195 406 aa17.33■□□□□ 0.36
CLSTN3-213ENST00000541953 PPP2R5CQ13362 524 aa17.33■□□□□ 0.36
CLSTN3-213ENST00000541953 NONOQ15233 471 aaKnown RBP eCLIP17.33■□□□□ 0.36
CLSTN3-213ENST00000541953 MOXD1Q6UVY6 613 aa17.33■□□□□ 0.36
CLSTN3-213ENST00000541953 TRIM22Q8IYM9 498 aa17.33■□□□□ 0.36
CLSTN3-213ENST00000541953 TDRD5Q8NAT2 981 aaKnown RBP17.33■□□□□ 0.36
CLSTN3-213ENST00000541953 PRPF31Q8WWY3 499 aaKnown RBP17.33■□□□□ 0.36
CLSTN3-213ENST00000541953 ATOH1Q92858 354 aaPredicted RBP17.33■□□□□ 0.36
CLSTN3-213ENST00000541953 PRRX2Q99811 253 aa17.33■□□□□ 0.36
CLSTN3-213ENST00000541953 DHX33Q9H6R0 707 aaKnown RBP17.33■□□□□ 0.36
CLSTN3-213ENST00000541953 RGL1Q9NZL6 768 aa17.33■□□□□ 0.36
CLSTN3-213ENST00000541953 GFRA3O60609 400 aa17.32■□□□□ 0.36
CLSTN3-213ENST00000541953 POMCP01189 267 aa17.32■□□□□ 0.36
CLSTN3-213ENST00000541953 CNPP09543 421 aaKnown RBP17.32■□□□□ 0.36
CLSTN3-213ENST00000541953 SRGAP2CP0DJJ0 459 aa17.32■□□□□ 0.36
CLSTN3-213ENST00000541953 MYBP10242 640 aa17.32■□□□□ 0.36
CLSTN3-213ENST00000541953 DNM2P50570 870 aa17.32■□□□□ 0.36
CLSTN3-213ENST00000541953 POLGP54098 1239 aaPredicted RBP17.32■□□□□ 0.36
CLSTN3-213ENST00000541953 RNASELQ05823 741 aaKnown RBP17.32■□□□□ 0.36
CLSTN3-213ENST00000541953 CWF19L1Q69YN2 538 aaKnown RBP17.32■□□□□ 0.36
CLSTN3-213ENST00000541953 TAS1R1Q7RTX1 841 aa17.32■□□□□ 0.36
CLSTN3-213ENST00000541953 POTEDQ86YR6 584 aa17.32■□□□□ 0.36
CLSTN3-213ENST00000541953 ZDHHC14Q8IZN3 488 aa17.32■□□□□ 0.36
CLSTN3-213ENST00000541953 SMG8Q8ND04 991 aaKnown RBP17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms