RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 SORBS3O60504 671 aa13.57□□□□□ -0.24
RNF4-222ENST00000541204 HIP1RO75146 1068 aa13.57□□□□□ -0.24
RNF4-222ENST00000541204 HNRNPH1P31943 449 aaKnown RBP13.57□□□□□ -0.24
RNF4-222ENST00000541204 PRKCIP41743 596 aa13.57□□□□□ -0.24
RNF4-222ENST00000541204 HSD17B4P51659 736 aa13.57□□□□□ -0.24
RNF4-222ENST00000541204 RPS6P62753 249 aaKnown RBP13.57□□□□□ -0.24
RNF4-222ENST00000541204 ZNF844Q08AG5 666 aa13.57□□□□□ -0.24
RNF4-222ENST00000541204 LRIG3Q6UXM1 1119 aa13.57□□□□□ -0.24
RNF4-222ENST00000541204 SUGP1Q8IWZ8 645 aaKnown RBP13.57□□□□□ -0.24
RNF4-222ENST00000541204 UBLCP1Q8WVY7 318 aaPredicted RBP13.57□□□□□ -0.24
RNF4-222ENST00000541204 CALR3Q96L12 384 aaKnown RBP13.57□□□□□ -0.24
RNF4-222ENST00000541204 ZMYM2Q9UBW7 1377 aa13.57□□□□□ -0.24
RNF4-222ENST00000541204 TISP43B9A030 160 aa13.57□□□□□ -0.24
RNF4-222ENST00000541204 MYO1FO00160 1098 aa13.57□□□□□ -0.24
RNF4-222ENST00000541204 DDX3XO00571 662 aaKnown RBP eCLIP13.57□□□□□ -0.242e-8■■■□□ 17.9
RNF4-222ENST00000541204 WDR46O15213 610 aaKnown RBP13.57□□□□□ -0.24
RNF4-222ENST00000541204 H2AFZP0C0S5 128 aa13.57□□□□□ -0.24
RNF4-222ENST00000541204 MRPS9P82933 396 aaKnown RBP13.57□□□□□ -0.24
RNF4-222ENST00000541204 SETQ01105 290 aaPredicted RBP13.57□□□□□ -0.24
RNF4-222ENST00000541204 MTMR1Q13613 665 aa13.57□□□□□ -0.24
RNF4-222ENST00000541204 TNFAIP1Q13829 316 aa13.57□□□□□ -0.24
RNF4-222ENST00000541204 KCNV1Q6PIU1 500 aa13.57□□□□□ -0.24
RNF4-222ENST00000541204 H2AFVQ71UI9 128 aa13.57□□□□□ -0.24
RNF4-222ENST00000541204 SYCP3Q8IZU3 236 aa13.57□□□□□ -0.24
RNF4-222ENST00000541204 EIF1ADQ8N9N8 165 aaKnown RBP13.57□□□□□ -0.24
RNF4-222ENST00000541204 SLC16A10Q8TF71 515 aa13.57□□□□□ -0.24
RNF4-222ENST00000541204 U2AF1L4Q8WU68 220 aaKnown RBP13.57□□□□□ -0.24
RNF4-222ENST00000541204 SLC35C1Q96A29 364 aa13.57□□□□□ -0.24
RNF4-222ENST00000541204 LRRC45Q96CN5 670 aa13.57□□□□□ -0.24
RNF4-222ENST00000541204 CELF4Q9BZC1 486 aaKnown RBP13.57□□□□□ -0.24
RNF4-222ENST00000541204 OLFML3Q9NRN5 406 aa13.57□□□□□ -0.24
RNF4-222ENST00000541204 FBXL5Q9UKA1 691 aa13.57□□□□□ -0.24
RNF4-222ENST00000541204 ATXN2Q99700 1313 aaKnown RBP13.56□□□□□ -0.24
RNF4-222ENST00000541204 TESPA1A2RU30 521 aaPredicted RBP13.56□□□□□ -0.24
RNF4-222ENST00000541204 TTI1O43156 1089 aa13.56□□□□□ -0.24
RNF4-222ENST00000541204 PLA2G6O60733 806 aa13.56□□□□□ -0.24
RNF4-222ENST00000541204 GFPT2O94808 682 aa13.56□□□□□ -0.24
RNF4-222ENST00000541204 TRIM49P0CI25 452 aa13.56□□□□□ -0.24
RNF4-222ENST00000541204 TRIM49CP0CI26 452 aa13.56□□□□□ -0.24
RNF4-222ENST00000541204 GAP43P17677 238 aa13.56□□□□□ -0.24
RNF4-222ENST00000541204 JAM2P57087 298 aa13.56□□□□□ -0.24
RNF4-222ENST00000541204 TKFCQ3LXA3 575 aa13.56□□□□□ -0.24
RNF4-222ENST00000541204 PADI6Q6TGC4 694 aa13.56□□□□□ -0.24
RNF4-222ENST00000541204 ZNF720Q7Z2F6 126 aa13.56□□□□□ -0.24
RNF4-222ENST00000541204 SPATS2Q86XZ4 545 aaKnown RBP13.56□□□□□ -0.24
RNF4-222ENST00000541204 FAM186BQ8IYM0 893 aa13.56□□□□□ -0.24
RNF4-222ENST00000541204 SYTL5Q8TDW5 730 aaPredicted RBP13.56□□□□□ -0.24
RNF4-222ENST00000541204 NENFQ9UMX5 172 aa13.56□□□□□ -0.24
RNF4-222ENST00000541204 RIPK3Q9Y572 518 aa13.56□□□□□ -0.24
RNF4-222ENST00000541204 KIF13BQ9NQT8 1826 aa13.56□□□□□ -0.24
RNF4-222ENST00000541204 RGPD3A6NKT7 1758 aaPredicted RBP13.56□□□□□ -0.24
RNF4-222ENST00000541204 RGPD4Q7Z3J3 1758 aa13.56□□□□□ -0.24
RNF4-222ENST00000541204 H0YHG0 523 aa13.56□□□□□ -0.24
RNF4-222ENST00000541204 FAM107AO95990 144 aa13.56□□□□□ -0.24
RNF4-222ENST00000541204 TGFB2P61812 414 aa13.56□□□□□ -0.24
RNF4-222ENST00000541204 MAP3K10Q02779 954 aa13.56□□□□□ -0.24
RNF4-222ENST00000541204 RNF187Q5TA31 235 aaPredicted RBP13.56□□□□□ -0.24
RNF4-222ENST00000541204 SLFN11Q7Z7L1 901 aa13.56□□□□□ -0.24
RNF4-222ENST00000541204 NT5DC3Q86UY8 548 aa13.56□□□□□ -0.24
RNF4-222ENST00000541204 VPS36Q86VN1 386 aa13.56□□□□□ -0.24
RNF4-222ENST00000541204 ATG4CQ96DT6 458 aa13.56□□□□□ -0.24
RNF4-222ENST00000541204 KIAA1683Q9H0B3 1180 aa13.56□□□□□ -0.24
RNF4-222ENST00000541204 VPS33BQ9H267 617 aa13.56□□□□□ -0.24
RNF4-222ENST00000541204 PCIF1Q9H4Z3 704 aa13.56□□□□□ -0.24
RNF4-222ENST00000541204 SLC38A10Q9HBR0 1119 aa13.56□□□□□ -0.24
RNF4-222ENST00000541204 OSGEPQ9NPF4 335 aa13.56□□□□□ -0.24
RNF4-222ENST00000541204 STXBP5LQ9Y2K9 1186 aa13.56□□□□□ -0.24
RNF4-222ENST00000541204 ZHX2Q9Y6X8 837 aa13.56□□□□□ -0.24
RNF4-222ENST00000541204 BHMG1C9JSJ3 638 aaPredicted RBP13.55□□□□□ -0.24
RNF4-222ENST00000541204 ATP9AO75110 1047 aa13.55□□□□□ -0.24
RNF4-222ENST00000541204 GUCY2CP25092 1073 aa13.55□□□□□ -0.24
RNF4-222ENST00000541204 TMOD1P28289 359 aa13.55□□□□□ -0.24
RNF4-222ENST00000541204 FNTAP49354 379 aa13.55□□□□□ -0.24
RNF4-222ENST00000541204 SP4Q02446 784 aa13.55□□□□□ -0.24
RNF4-222ENST00000541204 BMT2Q1RMZ1 405 aa13.55□□□□□ -0.24
RNF4-222ENST00000541204 MICALCLQ6ZW33 695 aa13.55□□□□□ -0.24
RNF4-222ENST00000541204 CNPY4Q8N129 248 aa13.55□□□□□ -0.24
RNF4-222ENST00000541204 LMBR1Q8WVP7 490 aa13.55□□□□□ -0.24
RNF4-222ENST00000541204 FIZ1Q96SL8 496 aa13.55□□□□□ -0.24
RNF4-222ENST00000541204 RMDN3Q96TC7 470 aa13.55□□□□□ -0.24
RNF4-222ENST00000541204 DPH5Q9H2P9 285 aa13.55□□□□□ -0.24
RNF4-222ENST00000541204 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.55□□□□□ -0.24
RNF4-222ENST00000541204 SUCLA2Q9P2R7 463 aaPredicted RBP13.55□□□□□ -0.24
RNF4-222ENST00000541204 FRMPD4Q14CM0 1322 aa13.55□□□□□ -0.24
RNF4-222ENST00000541204 CCDC188H7C350 402 aa13.55□□□□□ -0.24
RNF4-222ENST00000541204 K7ENM7 598 aa13.55□□□□□ -0.24
RNF4-222ENST00000541204 GALCP54803 685 aa13.55□□□□□ -0.24
RNF4-222ENST00000541204 IFT88Q13099 833 aa13.55□□□□□ -0.24
RNF4-222ENST00000541204 ODF2Q5BJF6 829 aa13.55□□□□□ -0.24
RNF4-222ENST00000541204 MCF2L2Q86YR7 1114 aa13.55□□□□□ -0.24
RNF4-222ENST00000541204 DAW1Q8N136 415 aa13.55□□□□□ -0.24
RNF4-222ENST00000541204 RASGEF1CQ8N431 466 aa13.55□□□□□ -0.24
RNF4-222ENST00000541204 LPAR1Q92633 364 aa13.55□□□□□ -0.24
RNF4-222ENST00000541204 WRNIP1Q96S55 665 aa13.55□□□□□ -0.24
RNF4-222ENST00000541204 PAGR1Q9BTK6 254 aa13.55□□□□□ -0.24
RNF4-222ENST00000541204 PSME4Q14997 1843 aa13.55□□□□□ -0.24
RNF4-222ENST00000541204 DHX15O43143 795 aaKnown RBP13.54□□□□□ -0.24
RNF4-222ENST00000541204 CTNND1O60716 968 aaKnown RBP13.54□□□□□ -0.24
RNF4-222ENST00000541204 HMGCS2P54868 508 aa13.54□□□□□ -0.24
RNF4-222ENST00000541204 UGCGQ16739 394 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms