RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 TAB2Q9NYJ8 693 aa19.45■□□□□ 0.7
CLIP1-215ENST00000541108 LRRIQ4A6NIV6 560 aa19.44■□□□□ 0.7
CLIP1-215ENST00000541108 LGALS16A8MUM7 142 aa19.44■□□□□ 0.7
CLIP1-215ENST00000541108 K7ERI5 159 aa19.44■□□□□ 0.7
CLIP1-215ENST00000541108 CLIC2O15247 247 aa19.44■□□□□ 0.7
CLIP1-215ENST00000541108 ZEB2O60315 1214 aa19.44■□□□□ 0.7
CLIP1-215ENST00000541108 PTMAP06454 111 aaKnown RBP19.44■□□□□ 0.7
CLIP1-215ENST00000541108 PRKCSHP14314 528 aaPredicted RBP19.44■□□□□ 0.7
CLIP1-215ENST00000541108 IGBP1P78318 339 aa19.44■□□□□ 0.7
CLIP1-215ENST00000541108 PURAQ00577 322 aaKnown RBP19.44■□□□□ 0.7
CLIP1-215ENST00000541108 BEX3Q00994 111 aa19.44■□□□□ 0.7
CLIP1-215ENST00000541108 LAMTOR4Q0VGL1 99 aa19.44■□□□□ 0.7
CLIP1-215ENST00000541108 TFDP1Q14186 410 aa19.44■□□□□ 0.7
CLIP1-215ENST00000541108 MAN2A1Q16706 1144 aa19.44■□□□□ 0.7
CLIP1-215ENST00000541108 CCDC40Q4G0X9 1142 aa19.44■□□□□ 0.7
CLIP1-215ENST00000541108 GNASQ5JWF2 1037 aa19.44■□□□□ 0.7
CLIP1-215ENST00000541108 METTL13Q8N6R0 699 aa19.44■□□□□ 0.7
CLIP1-215ENST00000541108 NOC4LQ9BVI4 516 aaKnown RBP19.44■□□□□ 0.7
CLIP1-215ENST00000541108 TEX33O43247 280 aa19.43■□□□□ 0.7
CLIP1-215ENST00000541108 MYL3P08590 195 aa19.43■□□□□ 0.7
CLIP1-215ENST00000541108 CCND3P30281 292 aaPredicted RBP19.43■□□□□ 0.7
CLIP1-215ENST00000541108 PSEN2P49810 448 aa19.43■□□□□ 0.7
CLIP1-215ENST00000541108 STRN3Q13033 797 aa19.43■□□□□ 0.7
CLIP1-215ENST00000541108 MARCH8Q5T0T0 291 aa19.43■□□□□ 0.7
CLIP1-215ENST00000541108 CDCA2Q69YH5 1023 aaPredicted RBP19.43■□□□□ 0.7
CLIP1-215ENST00000541108 NFKBIZQ9BYH8 718 aa19.43■□□□□ 0.7
CLIP1-215ENST00000541108 C2orf40Q9H1Z8 148 aa19.43■□□□□ 0.7
CLIP1-215ENST00000541108 MSCO60682 206 aa19.43■□□□□ 0.7
CLIP1-215ENST00000541108 ADAMTS4O75173 837 aa19.43■□□□□ 0.7
CLIP1-215ENST00000541108 AKAP3O75969 853 aa19.43■□□□□ 0.7
CLIP1-215ENST00000541108 SMIM10L2AP0DMW4 78 aa19.43■□□□□ 0.7
CLIP1-215ENST00000541108 SMIM10L2BP0DMW5 78 aa19.43■□□□□ 0.7
CLIP1-215ENST00000541108 EPB41P11171 864 aaKnown RBP19.43■□□□□ 0.7
CLIP1-215ENST00000541108 PSMC2P35998 433 aaKnown RBP19.43■□□□□ 0.7
CLIP1-215ENST00000541108 PBX1P40424 430 aa19.43■□□□□ 0.7
CLIP1-215ENST00000541108 IRX5P78411 483 aaPredicted RBP19.43■□□□□ 0.7
CLIP1-215ENST00000541108 PPP2R3AQ06190 1150 aa19.43■□□□□ 0.7
CLIP1-215ENST00000541108 VWA3BQ502W6 1294 aa19.43■□□□□ 0.7
CLIP1-215ENST00000541108 MIIPQ5JXC2 388 aa19.43■□□□□ 0.7
CLIP1-215ENST00000541108 SPECC1LQ69YQ0 1117 aa19.43■□□□□ 0.7
CLIP1-215ENST00000541108 TAS1R3Q7RTX0 852 aa19.43■□□□□ 0.7
CLIP1-215ENST00000541108 TRIM59Q8IWR1 403 aa19.43■□□□□ 0.7
CLIP1-215ENST00000541108 ARMCX3Q9UH62 379 aaPredicted RBP19.43■□□□□ 0.7
CLIP1-215ENST00000541108 FRMD4BQ9Y2L6 1034 aa19.43■□□□□ 0.7
CLIP1-215ENST00000541108 EVPLQ92817 2033 aa19.42■□□□□ 0.7
CLIP1-215ENST00000541108 A0A1W2PQC6 194 aa19.42■□□□□ 0.7
CLIP1-215ENST00000541108 PIGRP01833 764 aa19.42■□□□□ 0.7
CLIP1-215ENST00000541108 CST5P28325 142 aaPredicted RBP19.42■□□□□ 0.7
CLIP1-215ENST00000541108 CDC42EP1Q00587 391 aa19.42■□□□□ 0.7
CLIP1-215ENST00000541108 UBXN1Q04323 297 aa19.42■□□□□ 0.7
CLIP1-215ENST00000541108 TMC6Q7Z403 805 aa19.42■□□□□ 0.7
CLIP1-215ENST00000541108 RHPN2Q8IUC4 686 aa19.42■□□□□ 0.7
CLIP1-215ENST00000541108 ZBTB8OSQ8IWT0 167 aa19.42■□□□□ 0.7
CLIP1-215ENST00000541108 RNF149Q8NC42 400 aa19.42■□□□□ 0.7
CLIP1-215ENST00000541108 MTG1Q9BT17 334 aaPredicted RBP19.42■□□□□ 0.7
CLIP1-215ENST00000541108 IKZF4Q9H2S9 585 aa19.42■□□□□ 0.7
CLIP1-215ENST00000541108 NDST4Q9H3R1 872 aa19.42■□□□□ 0.7
CLIP1-215ENST00000541108 XPNPEP3Q9NQH7 507 aa19.42■□□□□ 0.7
CLIP1-215ENST00000541108 SETD4Q9NVD3 440 aa19.42■□□□□ 0.7
CLIP1-215ENST00000541108 ITIH6Q6UXX5 1313 aa19.42■□□□□ 0.7
CLIP1-215ENST00000541108 MBLAC1A4D2B0 266 aaPredicted RBP19.41■□□□□ 0.7
CLIP1-215ENST00000541108 MAPK13O15264 365 aa19.41■□□□□ 0.7
CLIP1-215ENST00000541108 CLCN3P51790 818 aa19.41■□□□□ 0.7
CLIP1-215ENST00000541108 GSDMDP57764 484 aa19.41■□□□□ 0.7
CLIP1-215ENST00000541108 C1QTNF8P60827 252 aa19.41■□□□□ 0.7
CLIP1-215ENST00000541108 ADAM17P78536 824 aa19.41■□□□□ 0.7
CLIP1-215ENST00000541108 CEP135Q66GS9 1140 aa19.41■□□□□ 0.7
CLIP1-215ENST00000541108 ARMCX5Q6P1M9 558 aa19.41■□□□□ 0.7
CLIP1-215ENST00000541108 KLHDC9Q8NEP7 349 aa19.41■□□□□ 0.7
CLIP1-215ENST00000541108 LMBR1Q8WVP7 490 aa19.41■□□□□ 0.7
CLIP1-215ENST00000541108 WBP1LQ9NX94 342 aa19.41■□□□□ 0.7
CLIP1-215ENST00000541108 DDX20Q9UHI6 824 aaKnown RBP19.41■□□□□ 0.7
CLIP1-215ENST00000541108 MYADML2A6NDP7 307 aa19.4■□□□□ 0.7
CLIP1-215ENST00000541108 HNRNPDLO14979 420 aaKnown RBP19.4■□□□□ 0.7
CLIP1-215ENST00000541108 KIAA0391O15091 583 aaKnown RBP19.4■□□□□ 0.7
CLIP1-215ENST00000541108 EXOC3O60645 756 aa19.4■□□□□ 0.7
CLIP1-215ENST00000541108 PGK1P00558 417 aa19.4■□□□□ 0.7
CLIP1-215ENST00000541108 SRGAP2CP0DJJ0 459 aa19.4■□□□□ 0.7
CLIP1-215ENST00000541108 GNAT1P11488 350 aa19.4■□□□□ 0.7
CLIP1-215ENST00000541108 GARTP22102 1010 aa19.4■□□□□ 0.7
CLIP1-215ENST00000541108 GRK4P32298 578 aa19.4■□□□□ 0.7
CLIP1-215ENST00000541108 PTENP60484 403 aa19.4■□□□□ 0.7
CLIP1-215ENST00000541108 FKBP15Q5T1M5 1219 aa19.4■□□□□ 0.7
CLIP1-215ENST00000541108 NFRKBQ6P4R8 1299 aa19.4■□□□□ 0.7
CLIP1-215ENST00000541108 CCDC186Q7Z3E2 898 aa19.4■□□□□ 0.7
CLIP1-215ENST00000541108 IFNLR1Q8IU57 520 aaPredicted RBP19.4■□□□□ 0.7
CLIP1-215ENST00000541108 XXYLT1Q8NBI6 393 aa19.4■□□□□ 0.7
CLIP1-215ENST00000541108 BORCS6Q96GS4 357 aa19.4■□□□□ 0.7
CLIP1-215ENST00000541108 MAP7D2Q96T17 732 aa19.4■□□□□ 0.7
CLIP1-215ENST00000541108 TRIM17Q9Y577 477 aa19.4■□□□□ 0.7
CLIP1-215ENST00000541108 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.4■□□□□ 0.7
CLIP1-215ENST00000541108 STYXL1Q9Y6J8 313 aa19.4■□□□□ 0.7
CLIP1-215ENST00000541108 SIP14410 1827 aa19.4■□□□□ 0.7
CLIP1-215ENST00000541108 SMIM35A0A1B0GVV1 85 aa19.4■□□□□ 0.7
CLIP1-215ENST00000541108 ADSSP30520 456 aa19.4■□□□□ 0.7
CLIP1-215ENST00000541108 HOXC8P31273 242 aa19.4■□□□□ 0.7
CLIP1-215ENST00000541108 CASP4P49662 377 aa19.4■□□□□ 0.7
CLIP1-215ENST00000541108 SLFN12LQ6IEE8 588 aa19.4■□□□□ 0.7
CLIP1-215ENST00000541108 ZPBP2Q6X784 338 aa19.4■□□□□ 0.7
CLIP1-215ENST00000541108 FAM186BQ8IYM0 893 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms