RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 NCOA5Q9HCD5 579 aaKnown RBP15.25■□□□□ 0.03
SS18-204ENST00000539244 TSHZ2Q9NRE2 1034 aa15.25■□□□□ 0.03
SS18-204ENST00000539244 SUCLA2Q9P2R7 463 aaPredicted RBP15.25■□□□□ 0.03
SS18-204ENST00000539244 PIN4Q9Y237 131 aaKnown RBP15.25■□□□□ 0.03
SS18-204ENST00000539244 MYO15AQ9UKN7 3530 aa15.25■□□□□ 0.03
SS18-204ENST00000539244 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.24■□□□□ 0.03
SS18-204ENST00000539244 TMEM150BA6NC51 233 aa15.24■□□□□ 0.03
SS18-204ENST00000539244 OFD1O75665 1012 aa15.24■□□□□ 0.03
SS18-204ENST00000539244 TOB2Q14106 344 aaPredicted RBP15.24■□□□□ 0.03
SS18-204ENST00000539244 NOMO2Q5JPE7 1267 aa15.24■□□□□ 0.03
SS18-204ENST00000539244 GALNT17Q6IS24 598 aa15.24■□□□□ 0.03
SS18-204ENST00000539244 ANO5Q75V66 913 aa15.24■□□□□ 0.03
SS18-204ENST00000539244 RHPN2Q8IUC4 686 aa15.24■□□□□ 0.03
SS18-204ENST00000539244 TRIM22Q8IYM9 498 aa15.24■□□□□ 0.03
SS18-204ENST00000539244 LPPQ93052 612 aa15.24■□□□□ 0.03
SS18-204ENST00000539244 JPH2Q9BR39 696 aaPredicted RBP15.24■□□□□ 0.03
SS18-204ENST00000539244 IFT122Q9HBG6 1241 aa15.24■□□□□ 0.03
SS18-204ENST00000539244 STK39Q9UEW8 545 aa15.24■□□□□ 0.03
SS18-204ENST00000539244 CFAP54Q96N23 3096 aa15.23■□□□□ 0.03
SS18-204ENST00000539244 PLXNA3P51805 1871 aa15.23■□□□□ 0.03
SS18-204ENST00000539244 MEIS3P2A8K0S8 358 aa15.23■□□□□ 0.03
SS18-204ENST00000539244 EPB41L2O43491 1005 aaKnown RBP15.23■□□□□ 0.03
SS18-204ENST00000539244 GALR2O43603 387 aaPredicted RBP15.23■□□□□ 0.03
SS18-204ENST00000539244 DEXIO95424 95 aa15.23■□□□□ 0.03
SS18-204ENST00000539244 EPCAMP16422 314 aa15.23■□□□□ 0.03
SS18-204ENST00000539244 PSMC5P62195 406 aa15.23■□□□□ 0.03
SS18-204ENST00000539244 SSRP1Q08945 709 aaKnown RBP15.23■□□□□ 0.03
SS18-204ENST00000539244 ATAT1Q5SQI0 421 aa15.23■□□□□ 0.03
SS18-204ENST00000539244 RARS2Q5T160 578 aaKnown RBP15.23■□□□□ 0.03
SS18-204ENST00000539244 PPFIBP1Q86W92 1011 aa15.23■□□□□ 0.03
SS18-204ENST00000539244 BLIDQ8IZY5 108 aa15.23■□□□□ 0.03
SS18-204ENST00000539244 PLCD3Q8N3E9 789 aa15.23■□□□□ 0.03
SS18-204ENST00000539244 TDRD5Q8NAT2 981 aaKnown RBP15.23■□□□□ 0.03
SS18-204ENST00000539244 BCL7CQ8WUZ0 217 aaPredicted RBP15.23■□□□□ 0.03
SS18-204ENST00000539244 AUTS2Q8WXX7 1259 aa15.23■□□□□ 0.03
SS18-204ENST00000539244 SH2D3AQ9BRG2 576 aa15.23■□□□□ 0.03
SS18-204ENST00000539244 VN1R3Q9BXE9 311 aa15.23■□□□□ 0.03
SS18-204ENST00000539244 AGPAT5Q9NUQ2 364 aa15.23■□□□□ 0.03
SS18-204ENST00000539244 PPME1Q9Y570 386 aa15.23■□□□□ 0.03
SS18-204ENST00000539244 DDX11L8A8MPP1 907 aa15.22■□□□□ 0.03
SS18-204ENST00000539244 PROB1E7EW31 1015 aa15.22■□□□□ 0.03
SS18-204ENST00000539244 REC8O95072 547 aa15.22■□□□□ 0.03
SS18-204ENST00000539244 CA8P35219 290 aa15.22■□□□□ 0.03
SS18-204ENST00000539244 SLC11A1P49279 550 aa15.22■□□□□ 0.03
SS18-204ENST00000539244 PPP2R5CQ13362 524 aa15.22■□□□□ 0.03
SS18-204ENST00000539244 PTPN14Q15678 1187 aa15.22■□□□□ 0.03
SS18-204ENST00000539244 RUFY3Q7L099 469 aa15.22■□□□□ 0.03
SS18-204ENST00000539244 CATSPER4Q7RTX7 472 aa15.22■□□□□ 0.03
SS18-204ENST00000539244 MRPL10Q7Z7H8 261 aaKnown RBP15.22■□□□□ 0.03
SS18-204ENST00000539244 KSR1Q8IVT5 923 aa15.22■□□□□ 0.03
SS18-204ENST00000539244 C12orf76Q8N812 135 aaPredicted RBP15.22■□□□□ 0.03
SS18-204ENST00000539244 ATOH1Q92858 354 aaPredicted RBP15.22■□□□□ 0.03
SS18-204ENST00000539244 PGBD4Q96DM1 585 aa15.22■□□□□ 0.03
SS18-204ENST00000539244 ZNF274Q96GC6 653 aaPredicted RBP15.22■□□□□ 0.03
SS18-204ENST00000539244 ZSWIM6Q9HCJ5 1215 aa15.22■□□□□ 0.03
SS18-204ENST00000539244 CYP26B1Q9NR63 512 aa15.22■□□□□ 0.03
SS18-204ENST00000539244 FAM86C1Q9NVL1 165 aa15.22■□□□□ 0.03
SS18-204ENST00000539244 DNAJB4Q9UDY4 337 aa15.22■□□□□ 0.03
SS18-204ENST00000539244 EML1O00423 815 aa15.21■□□□□ 0.03
SS18-204ENST00000539244 B4GALT3O60512 393 aa15.21■□□□□ 0.03
SS18-204ENST00000539244 GFRA3O60609 400 aa15.21■□□□□ 0.03
SS18-204ENST00000539244 WEE2P0C1S8 567 aa15.21■□□□□ 0.03
SS18-204ENST00000539244 QARSP47897 775 aaKnown RBP15.21■□□□□ 0.03
SS18-204ENST00000539244 NONOQ15233 471 aaKnown RBP eCLIP15.21■□□□□ 0.03
SS18-204ENST00000539244 AGMOQ6ZNB7 445 aa15.21■□□□□ 0.03
SS18-204ENST00000539244 KRT25Q7Z3Z0 450 aa15.21■□□□□ 0.03
SS18-204ENST00000539244 SRGAP1Q7Z6B7 1085 aa15.21■□□□□ 0.03
SS18-204ENST00000539244 GPR149Q86SP6 731 aa15.21■□□□□ 0.03
SS18-204ENST00000539244 EXOC8Q8IYI6 725 aa15.21■□□□□ 0.03
SS18-204ENST00000539244 TMEM105Q8N8V8 129 aa15.21■□□□□ 0.03
SS18-204ENST00000539244 TMEM87AQ8NBN3 555 aa15.21■□□□□ 0.03
SS18-204ENST00000539244 FAM20AQ96MK3 541 aa15.21■□□□□ 0.03
SS18-204ENST00000539244 NLRP4Q96MN2 994 aa15.21■□□□□ 0.03
SS18-204ENST00000539244 DHX33Q9H6R0 707 aaKnown RBP15.21■□□□□ 0.03
SS18-204ENST00000539244 SFXN1Q9H9B4 322 aa15.21■□□□□ 0.03
SS18-204ENST00000539244 KCNMB3Q9NPA1 279 aa15.21■□□□□ 0.03
SS18-204ENST00000539244 DDX25Q9UHL0 483 aaKnown RBP15.21■□□□□ 0.03
SS18-204ENST00000539244 DBR1Q9UK59 544 aaKnown RBP15.21■□□□□ 0.03
SS18-204ENST00000539244 VAV3Q9UKW4 847 aa15.21■□□□□ 0.03
SS18-204ENST00000539244 INPP5FQ9Y2H2 1132 aa15.21■□□□□ 0.03
SS18-204ENST00000539244 PCDHB2Q9Y5E7 798 aa15.21■□□□□ 0.03
SS18-204ENST00000539244 COL4A3BPQ9Y5P4 624 aa15.21■□□□□ 0.03
SS18-204ENST00000539244 CNTNAP2Q9UHC6 1331 aa15.2■□□□□ 0.02
SS18-204ENST00000539244 H0Y858 1186 aa15.2■□□□□ 0.02
SS18-204ENST00000539244 SLC37A4O43826 429 aa15.2■□□□□ 0.02
SS18-204ENST00000539244 DKC1O60832 514 aaKnown RBP eCLIP15.2■□□□□ 0.02
SS18-204ENST00000539244 LILRB3O75022 631 aa15.2■□□□□ 0.02
SS18-204ENST00000539244 ASGR2P07307 311 aa15.2■□□□□ 0.02
SS18-204ENST00000539244 HOXA11P31270 313 aaPredicted RBP15.2■□□□□ 0.02
SS18-204ENST00000539244 RNASELQ05823 741 aaKnown RBP15.2■□□□□ 0.02
SS18-204ENST00000539244 LONRF3Q496Y0 759 aa15.2■□□□□ 0.02
SS18-204ENST00000539244 PLA2G4FQ68DD2 849 aa15.2■□□□□ 0.02
SS18-204ENST00000539244 PPP4R3AQ6IN85 833 aa15.2■□□□□ 0.02
SS18-204ENST00000539244 KANK3Q6NY19 840 aa15.2■□□□□ 0.02
SS18-204ENST00000539244 CABP7Q86V35 215 aa15.2■□□□□ 0.02
SS18-204ENST00000539244 ZNF280BQ86YH2 543 aa15.2■□□□□ 0.02
SS18-204ENST00000539244 URGCPQ8TCY9 931 aa15.2■□□□□ 0.02
SS18-204ENST00000539244 SLC7A3Q8WY07 619 aa15.2■□□□□ 0.02
SS18-204ENST00000539244 TMEM175Q9BSA9 504 aa15.2■□□□□ 0.02
SS18-204ENST00000539244 SMOC2Q9H3U7 446 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms