RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 COQ10AQ96MF6 247 aa3.9□□□□□ -1.79
SKA3-207ENST00000536239 CPPED1Q9BRF8 314 aaPredicted RBP3.9□□□□□ -1.79
SKA3-207ENST00000536239 C14orf93Q9H972 538 aaKnown RBP3.9□□□□□ -1.79
SKA3-207ENST00000536239 DNAI1Q9UI46 699 aa3.9□□□□□ -1.79
SKA3-207ENST00000536239 MTSS1O43312 755 aa3.89□□□□□ -1.79
SKA3-207ENST00000536239 HOXA3O43365 443 aaPredicted RBP3.89□□□□□ -1.79
SKA3-207ENST00000536239 PTH2RP49190 550 aa3.89□□□□□ -1.79
SKA3-207ENST00000536239 FNTBP49356 437 aa3.89□□□□□ -1.79
SKA3-207ENST00000536239 ELLP55199 621 aaPredicted RBP3.89□□□□□ -1.79
SKA3-207ENST00000536239 IRF9Q00978 393 aa3.89□□□□□ -1.79
SKA3-207ENST00000536239 ERCC6LQ2NKX8 1250 aa3.89□□□□□ -1.79
SKA3-207ENST00000536239 FAM214AQ32MH5 1076 aa3.89□□□□□ -1.79
SKA3-207ENST00000536239 LCE1AQ5T7P2 110 aa3.89□□□□□ -1.79
SKA3-207ENST00000536239 SLFN12LQ6IEE8 588 aa3.89□□□□□ -1.79
SKA3-207ENST00000536239 BMP8AQ7Z5Y6 402 aa3.89□□□□□ -1.79
SKA3-207ENST00000536239 LILRA3Q8N6C8 439 aaPredicted RBP3.89□□□□□ -1.79
SKA3-207ENST00000536239 LINC00476Q8WZB0 136 aa3.89□□□□□ -1.79
SKA3-207ENST00000536239 CAVIN3Q969G5 261 aa3.89□□□□□ -1.79
SKA3-207ENST00000536239 EXOC2Q96KP1 924 aa3.89□□□□□ -1.79
SKA3-207ENST00000536239 PDCD2LQ9BRP1 358 aa3.89□□□□□ -1.79
SKA3-207ENST00000536239 DHRS4Q9BTZ2 278 aa3.89□□□□□ -1.79
SKA3-207ENST00000536239 HAPLN2Q9GZV7 340 aa3.89□□□□□ -1.79
SKA3-207ENST00000536239 DKK2Q9UBU2 259 aa3.89□□□□□ -1.79
SKA3-207ENST00000536239 TESQ9UGI8 421 aaKnown RBP3.89□□□□□ -1.79
SKA3-207ENST00000536239 FRMD4BQ9Y2L6 1034 aa3.89□□□□□ -1.79
SKA3-207ENST00000536239 LOC101059915A0A1B0GWI6 518 aaPredicted RBP3.88□□□□□ -1.79
SKA3-207ENST00000536239 APPP05067 770 aa3.88□□□□□ -1.79
SKA3-207ENST00000536239 SEC24CP53992 1094 aa3.88□□□□□ -1.79
SKA3-207ENST00000536239 FOXI1Q12951 378 aa3.88□□□□□ -1.79
SKA3-207ENST00000536239 VPS72Q15906 364 aa3.88□□□□□ -1.79
SKA3-207ENST00000536239 CMTR2Q8IYT2 770 aaKnown RBP3.88□□□□□ -1.79
SKA3-207ENST00000536239 C2orf69Q8N8R5 385 aa3.88□□□□□ -1.79
SKA3-207ENST00000536239 BOLLQ8N9W6 283 aaKnown RBP3.88□□□□□ -1.79
SKA3-207ENST00000536239 SIMC1Q8NDZ2 872 aa3.88□□□□□ -1.79
SKA3-207ENST00000536239 OR52N2Q8NGI0 321 aa3.88□□□□□ -1.79
SKA3-207ENST00000536239 TINF2Q9BSI4 451 aa3.88□□□□□ -1.79
SKA3-207ENST00000536239 NDC1Q9BTX1 674 aa3.88□□□□□ -1.79
SKA3-207ENST00000536239 ENKD1Q9H0I2 346 aa3.88□□□□□ -1.79
SKA3-207ENST00000536239 SLC52A2Q9HAB3 445 aa3.88□□□□□ -1.79
SKA3-207ENST00000536239 TRPM5Q9NZQ8 1165 aa3.88□□□□□ -1.79
SKA3-207ENST00000536239 WDR3Q9UNX4 943 aaKnown RBP eCLIP3.88□□□□□ -1.79
SKA3-207ENST00000536239 UBA6A0AVT1 1052 aaPredicted RBP3.87□□□□□ -1.79
SKA3-207ENST00000536239 UNCXA6NJT0 531 aa3.87□□□□□ -1.79
SKA3-207ENST00000536239 RNASET2O00584 256 aaKnown RBP3.87□□□□□ -1.79
SKA3-207ENST00000536239 PDPK1O15530 556 aa3.87□□□□□ -1.79
SKA3-207ENST00000536239 EFCAB14O75071 495 aa3.87□□□□□ -1.79
SKA3-207ENST00000536239 C1RP00736 705 aa3.87□□□□□ -1.79
SKA3-207ENST00000536239 HKR1P10072 659 aa3.87□□□□□ -1.79
SKA3-207ENST00000536239 APOBEC3AP31941 199 aaPredicted RBP3.87□□□□□ -1.79
SKA3-207ENST00000536239 CXCR5P32302 372 aa3.87□□□□□ -1.79
SKA3-207ENST00000536239 SSRP1Q08945 709 aaKnown RBP3.87□□□□□ -1.79
SKA3-207ENST00000536239 TTC38Q5R3I4 469 aa3.87□□□□□ -1.79
SKA3-207ENST00000536239 SP5Q6BEB4 398 aaPredicted RBP3.87□□□□□ -1.79
SKA3-207ENST00000536239 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.87□□□□□ -1.79
SKA3-207ENST00000536239 OTOP1Q7RTM1 612 aa3.87□□□□□ -1.79
SKA3-207ENST00000536239 GDF7Q7Z4P5 450 aa3.87□□□□□ -1.79
SKA3-207ENST00000536239 FAM83AQ86UY5 434 aa3.87□□□□□ -1.79
SKA3-207ENST00000536239 GLB1L3Q8NCI6 653 aaPredicted RBP3.87□□□□□ -1.79
SKA3-207ENST00000536239 GSTCDQ8NEC7 633 aa3.87□□□□□ -1.79
SKA3-207ENST00000536239 MAGEB10Q96LZ2 347 aaPredicted RBP3.87□□□□□ -1.79
SKA3-207ENST00000536239 DCLRE1CQ96SD1 692 aaKnown RBP3.87□□□□□ -1.79
SKA3-207ENST00000536239 LRFN3Q9BTN0 628 aa3.87□□□□□ -1.79
SKA3-207ENST00000536239 SPATA5L1Q9BVQ7 753 aa3.87□□□□□ -1.79
SKA3-207ENST00000536239 CPEB1Q9BZB8 566 aaKnown RBP3.87□□□□□ -1.79
SKA3-207ENST00000536239 AKIP1Q9NQ31 210 aa3.87□□□□□ -1.79
SKA3-207ENST00000536239 NDOR1Q9UHB4 597 aa3.87□□□□□ -1.79
SKA3-207ENST00000536239 PFDN2Q9UHV9 154 aa3.87□□□□□ -1.79
SKA3-207ENST00000536239 MSRB2Q9Y3D2 182 aa3.87□□□□□ -1.79
SKA3-207ENST00000536239 MRPS23Q9Y3D9 190 aaKnown RBP3.87□□□□□ -1.79
SKA3-207ENST00000536239 GAGE12BA1L429 117 aa3.86□□□□□ -1.79
SKA3-207ENST00000536239 PIPSLA2A3N6 862 aa3.86□□□□□ -1.79
SKA3-207ENST00000536239 GAGE12HA6NDE8 117 aa3.86□□□□□ -1.79
SKA3-207ENST00000536239 MYADML2A6NDP7 307 aa3.86□□□□□ -1.79
SKA3-207ENST00000536239 DNAJC6O75061 913 aa3.86□□□□□ -1.79
SKA3-207ENST00000536239 NCR1O76036 304 aa3.86□□□□□ -1.79
SKA3-207ENST00000536239 NDUFA10O95299 355 aa3.86□□□□□ -1.79
SKA3-207ENST00000536239 NPTXRO95502 500 aa3.86□□□□□ -1.79
SKA3-207ENST00000536239 FAM153BP0C7A2 387 aa3.86□□□□□ -1.79
SKA3-207ENST00000536239 KCNA6P17658 529 aa3.86□□□□□ -1.79
SKA3-207ENST00000536239 BMPR1AP36894 532 aa3.86□□□□□ -1.79
SKA3-207ENST00000536239 BCAR1P56945 870 aa3.86□□□□□ -1.79
SKA3-207ENST00000536239 MTERF2Q49AM1 385 aa3.86□□□□□ -1.79
SKA3-207ENST00000536239 TMEM177Q53S58 311 aa3.86□□□□□ -1.79
SKA3-207ENST00000536239 BRAPQ7Z569 592 aa3.86□□□□□ -1.79
SKA3-207ENST00000536239 BOCQ9BWV1 1114 aa3.86□□□□□ -1.79
SKA3-207ENST00000536239 OSBPL6Q9BZF3 934 aa3.86□□□□□ -1.79
SKA3-207ENST00000536239 EPC1Q9H2F5 836 aa3.86□□□□□ -1.79
SKA3-207ENST00000536239 SYNPO2Q9UMS6 1093 aa3.86□□□□□ -1.79
SKA3-207ENST00000536239 ARHGEF17Q96PE2 2063 aaPredicted RBP3.86□□□□□ -1.79
SKA3-207ENST00000536239 COL3A1P02461 1466 aaPredicted RBP3.86□□□□□ -1.79
SKA3-207ENST00000536239 DIAPH1O60610 1272 aaKnown RBP3.85□□□□□ -1.79
SKA3-207ENST00000536239 CFBP00751 764 aa3.85□□□□□ -1.79
SKA3-207ENST00000536239 CTGFP29279 349 aa3.85□□□□□ -1.79
SKA3-207ENST00000536239 PLA2G5P39877 138 aa3.85□□□□□ -1.79
SKA3-207ENST00000536239 KIF11P52732 1056 aa3.85□□□□□ -1.79
SKA3-207ENST00000536239 FOXF2Q12947 444 aa3.85□□□□□ -1.79
SKA3-207ENST00000536239 RASGRF1Q13972 1273 aa3.85□□□□□ -1.79
SKA3-207ENST00000536239 BEAN1Q3B7T3 259 aa3.85□□□□□ -1.79
SKA3-207ENST00000536239 PRAMEF9Q5VWM5 478 aa3.85□□□□□ -1.79
SKA3-207ENST00000536239 ABHD17CQ6PCB6 329 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms