RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 SLC9A2Q9UBY0 812 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 NID2Q14112 1375 aa9.18□□□□□ -0.94
NEDD8-207ENST00000533242 NFASCO94856 1347 aa9.18□□□□□ -0.94
NEDD8-207ENST00000533242 WNT7AO00755 349 aa9.18□□□□□ -0.94
NEDD8-207ENST00000533242 LAG3P18627 525 aa9.18□□□□□ -0.94
NEDD8-207ENST00000533242 TECP42680 631 aa9.18□□□□□ -0.94
NEDD8-207ENST00000533242 SYKP43405 635 aa9.18□□□□□ -0.94
NEDD8-207ENST00000533242 GNAQP50148 359 aa9.18□□□□□ -0.94
NEDD8-207ENST00000533242 ERVFC1P60507 584 aa9.18□□□□□ -0.94
NEDD8-207ENST00000533242 SSRP1Q08945 709 aaKnown RBP9.18□□□□□ -0.94
NEDD8-207ENST00000533242 RTN1Q16799 776 aa9.18□□□□□ -0.94
NEDD8-207ENST00000533242 EARS2Q5JPH6 523 aaKnown RBP9.18□□□□□ -0.94
NEDD8-207ENST00000533242 RESP18Q5W5W9 173 aa9.18□□□□□ -0.94
NEDD8-207ENST00000533242 SYCE2Q6PIF2 218 aa9.18□□□□□ -0.94
NEDD8-207ENST00000533242 MTHFD1LQ6UB35 978 aa9.18□□□□□ -0.94
NEDD8-207ENST00000533242 USP49Q70CQ1 688 aa9.18□□□□□ -0.94
NEDD8-207ENST00000533242 ZBTB33Q86T24 672 aa9.18□□□□□ -0.94
NEDD8-207ENST00000533242 NOSTRINQ8IVI9 506 aa9.18□□□□□ -0.94
NEDD8-207ENST00000533242 THNSL1Q8IYQ7 743 aa9.18□□□□□ -0.94
NEDD8-207ENST00000533242 ZNF654Q8IZM8 581 aa9.18□□□□□ -0.94
NEDD8-207ENST00000533242 CTCFLQ8NI51 663 aaPredicted RBP9.18□□□□□ -0.94
NEDD8-207ENST00000533242 XPO4Q9C0E2 1151 aaKnown RBP9.18□□□□□ -0.94
NEDD8-207ENST00000533242 PSTPIP2Q9H939 334 aa9.18□□□□□ -0.94
NEDD8-207ENST00000533242 NR2E1Q9Y466 385 aa9.18□□□□□ -0.94
NEDD8-207ENST00000533242 PCDHB6Q9Y5E3 794 aa9.18□□□□□ -0.94
NEDD8-207ENST00000533242 STK36Q9NRP7 1315 aa9.18□□□□□ -0.94
NEDD8-207ENST00000533242 MGEA5O60502 916 aa9.17□□□□□ -0.94
NEDD8-207ENST00000533242 PPP6R2O75170 966 aa9.17□□□□□ -0.94
NEDD8-207ENST00000533242 HOXB8P17481 243 aaPredicted RBP9.17□□□□□ -0.94
NEDD8-207ENST00000533242 NLRP12P59046 1061 aa9.17□□□□□ -0.94
NEDD8-207ENST00000533242 PLCB3Q01970 1234 aa9.17□□□□□ -0.94
NEDD8-207ENST00000533242 GNL2Q13823 731 aaKnown RBP9.17□□□□□ -0.94
NEDD8-207ENST00000533242 CPLX2Q6PUV4 134 aaKnown RBP9.17□□□□□ -0.94
NEDD8-207ENST00000533242 SLC24A5Q71RS6 500 aa9.17□□□□□ -0.94
NEDD8-207ENST00000533242 UBALD2Q8IYN6 164 aa9.17□□□□□ -0.94
NEDD8-207ENST00000533242 TRAPPC12Q8WVT3 735 aa9.17□□□□□ -0.94
NEDD8-207ENST00000533242 PDCL3Q9H2J4 239 aa9.17□□□□□ -0.94
NEDD8-207ENST00000533242 CWH43Q9H720 699 aa9.17□□□□□ -0.94
NEDD8-207ENST00000533242 TMEM260Q9NX78 707 aa9.17□□□□□ -0.94
NEDD8-207ENST00000533242 IFNKQ9P0W0 207 aa9.17□□□□□ -0.94
NEDD8-207ENST00000533242 FAM237AA0A1B0GTK4 181 aa9.17□□□□□ -0.94
NEDD8-207ENST00000533242 DENND3A2RUS2 1198 aa9.17□□□□□ -0.94
NEDD8-207ENST00000533242 SPDYE3A6NKU9 549 aa9.17□□□□□ -0.94
NEDD8-207ENST00000533242 C9IYK1 514 aa9.17□□□□□ -0.94
NEDD8-207ENST00000533242 RPS6KA5O75582 802 aa9.17□□□□□ -0.94
NEDD8-207ENST00000533242 SLC26A2P50443 739 aa9.17□□□□□ -0.94
NEDD8-207ENST00000533242 STAT5BP51692 787 aa9.17□□□□□ -0.94
NEDD8-207ENST00000533242 NFX1Q12986 1120 aaKnown RBP9.17□□□□□ -0.94
NEDD8-207ENST00000533242 TMEM266Q2M3C6 531 aa9.17□□□□□ -0.94
NEDD8-207ENST00000533242 FANCBQ8NB91 859 aa9.17□□□□□ -0.94
NEDD8-207ENST00000533242 KREMEN2Q8NCW0 462 aa9.17□□□□□ -0.94
NEDD8-207ENST00000533242 ADAM2Q99965 735 aa9.17□□□□□ -0.94
NEDD8-207ENST00000533242 ELAC1Q9H777 363 aaKnown RBP9.17□□□□□ -0.94
NEDD8-207ENST00000533242 ATP6V0A4Q9HBG4 840 aa9.17□□□□□ -0.94
NEDD8-207ENST00000533242 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.17□□□□□ -0.94
NEDD8-207ENST00000533242 TYW1Q9NV66 732 aaKnown RBP9.17□□□□□ -0.94
NEDD8-207ENST00000533242 PUF60Q9UHX1 559 aaKnown RBP9.17□□□□□ -0.94
NEDD8-207ENST00000533242 PCDHA6Q9UN73 950 aa9.17□□□□□ -0.94
NEDD8-207ENST00000533242 NOC2LQ9Y3T9 749 aaKnown RBP9.17□□□□□ -0.94
NEDD8-207ENST00000533242 PCDHA8Q9Y5H6 950 aa9.17□□□□□ -0.94
NEDD8-207ENST00000533242 COL1A2P08123 1366 aa9.17□□□□□ -0.94
NEDD8-207ENST00000533242 DENND4AQ7Z401 1863 aa9.17□□□□□ -0.94
NEDD8-207ENST00000533242 MYH9P35579 1960 aaKnown RBP9.17□□□□□ -0.94
NEDD8-207ENST00000533242 WDR81Q562E7 1941 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 H0Y858 1186 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 ADAMTS3O15072 1205 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 GPR182O15218 404 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 PLEKHA8P1O95397 391 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 PDGFBP01127 241 aaPredicted RBP9.16□□□□□ -0.94
NEDD8-207ENST00000533242 PRR29P0C7W0 189 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 SKILP12757 684 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 NBL1P41271 181 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 ACTR2P61160 394 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 FAM189BP81408 668 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 FUT2Q10981 343 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 NAA30Q147X3 362 aaPredicted RBP9.16□□□□□ -0.94
NEDD8-207ENST00000533242 UBE2SQ16763 222 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 FAM102BQ5T8I3 360 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 PLPP4Q5VZY2 271 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 ARMCX5Q6P1M9 558 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 GRAMD1CQ8IYS0 662 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 CASP10Q92851 521 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 NECTIN4Q96NY8 510 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 BPIFA3Q9BQP9 254 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 MXRA8Q9BRK3 442 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 MTA3Q9BTC8 594 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 NGRNQ9NPE2 291 aaKnown RBP9.16□□□□□ -0.94
NEDD8-207ENST00000533242 TMEM161AQ9NX61 479 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 SORCS3Q9UPU3 1222 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 PRR23AA6NEV1 266 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 HBP1O60381 514 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 ATG7O95352 703 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 ATP2B1P20020 1258 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 IBSPP21815 317 aaPredicted RBP9.16□□□□□ -0.94
NEDD8-207ENST00000533242 KLRC1P26715 233 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 MTMR3Q13615 1198 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 TRIM29Q14134 588 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 SRBD1Q8N5C6 995 aaKnown RBP9.16□□□□□ -0.94
NEDD8-207ENST00000533242 TMEM117Q9H0C3 514 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 ENTPD7Q9NQZ7 604 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms