RNA–Protein interactions for RNA: ENST00000529828.5

PTPRC-213, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 2,336 nt, Biotype non stop decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-213ENST00000529828 PDE4CQ08493 712 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 DSG2Q14126 1118 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 RSPO4Q2I0M5 234 aaPredicted RBP4□□□□□ -1.77
PTPRC-213ENST00000529828 FAM160B1Q5W0V3 765 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 WWC2Q6AWC2 1192 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 TYW1BQ6NUM6 668 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 ABHD15Q6UXT9 468 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 CHD1LQ86WJ1 897 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 TICAM2Q86XR7 235 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 MB21D2Q8IYB1 491 aaPredicted RBP4□□□□□ -1.77
PTPRC-213ENST00000529828 NCOA7Q8NI08 942 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 IGDCC4Q8TDY8 1250 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 SLC22A17Q8WUG5 538 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 TNPO1Q92973 898 aaKnown RBP4□□□□□ -1.77
PTPRC-213ENST00000529828 RTP3Q9BQQ7 232 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 VN1R3Q9BXE9 311 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 ANO3Q9BYT9 981 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 FOXQ1Q9C009 403 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 ELAC1Q9H777 363 aaKnown RBP4□□□□□ -1.77
PTPRC-213ENST00000529828 TBC1D17Q9HA65 648 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 DZANK1Q9NVP4 752 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 DNAJB4Q9UDY4 337 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 STK17AQ9UEE5 414 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 SPEGQ15772 3267 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 ZZEF1O43149 2961 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 ANKRD11Q6UB99 2663 aaPredicted RBP4□□□□□ -1.77
PTPRC-213ENST00000529828 COL4A3Q01955 1670 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 IGKV6D-21A0A0A0MT36 114 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 PRC1O43663 620 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 DDAH1O94760 285 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 IGHDP01880 384 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 HMGB1P09429 215 aaKnown RBP4□□□□□ -1.77
PTPRC-213ENST00000529828 GSPT1P15170 499 aaKnown RBP4□□□□□ -1.77
PTPRC-213ENST00000529828 KLRC2P26717 231 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 ZNF76P36508 570 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 NAPAP54920 295 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 PUM1Q14671 1186 aaKnown RBP eCLIP4□□□□□ -1.77
PTPRC-213ENST00000529828 PTPN14Q15678 1187 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 CEP55Q53EZ4 464 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 ZNF484Q5JVG2 852 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 ODR4Q5SWX8 454 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 MIS18BP1Q6P0N0 1132 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 OTOP3Q7RTS5 596 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 GPR149Q86SP6 731 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 MICU3Q86XE3 530 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 GPR152Q8TDT2 470 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 NLRP7Q8WX94 980 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 ADAMTS10Q9H324 1103 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 SFXN1Q9H9B4 322 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 GABBR1Q9UBS5 961 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 RALYQ9UKM9 306 aaKnown RBP4□□□□□ -1.77
PTPRC-213ENST00000529828 USTQ9Y2C2 406 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 ATRXP46100 2492 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 COL1A2P08123 1366 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 ZFYVE26Q68DK2 2539 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 LAMA5O15230 3695 aa4□□□□□ -1.77
PTPRC-213ENST00000529828 SMG1Q96Q15 3661 aaKnown RBP4□□□□□ -1.77
PTPRC-213ENST00000529828 BAHCC1Q9P281 2608 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 CCDC69A6NI79 296 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 FAM86B1E9PN63 330 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 SH2B2O14492 632 aaPredicted RBP3.99□□□□□ -1.77
PTPRC-213ENST00000529828 ADAMTS3O15072 1205 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 MAFGO15525 162 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 RFPL2O75678 378 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 ATG7O95352 703 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 CNPP09543 421 aaKnown RBP3.99□□□□□ -1.77
PTPRC-213ENST00000529828 FAM86B2P0C5J1 330 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 SPATA31D3P0C874 917 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 SP9P0CG40 484 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 CTSAP10619 480 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 GLULP15104 373 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 CDK11BP21127 795 aaKnown RBP3.99□□□□□ -1.77
PTPRC-213ENST00000529828 BRD2P25440 801 aaKnown RBP3.99□□□□□ -1.77
PTPRC-213ENST00000529828 SLC11A1P49279 550 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 SLC26A2P50443 739 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 GPC3P51654 580 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 NUCB1Q02818 461 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 RNASELQ05823 741 aaKnown RBP3.99□□□□□ -1.77
PTPRC-213ENST00000529828 DRP2Q13474 957 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 LETM2Q2VYF4 491 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 JAKMIP3Q5VZ66 844 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 EFCAB12Q6NXP0 572 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 CASC1Q6TDU7 716 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 SPATA31D4Q6ZUB0 917 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 TMTC3Q6ZXV5 915 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 GET4Q7L5D6 327 aaPredicted RBP3.99□□□□□ -1.77
PTPRC-213ENST00000529828 ZNF598Q86UK7 904 aaKnown RBP3.99□□□□□ -1.77
PTPRC-213ENST00000529828 PLA2G4DQ86XP0 818 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 RUBCNQ92622 972 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 IGSF21Q96ID5 467 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 ZFRQ96KR1 1074 aaKnown RBP3.99□□□□□ -1.77
PTPRC-213ENST00000529828 KLHL5Q96PQ7 755 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 MYADMQ96S97 322 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 MAP7D2Q96T17 732 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 SH2D3AQ9BRG2 576 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 MRPL9Q9BYD2 267 aaKnown RBP3.99□□□□□ -1.77
PTPRC-213ENST00000529828 OSBPL3Q9H4L5 887 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 NRDE2Q9H7Z3 1164 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 MAN1C1Q9NR34 630 aa3.99□□□□□ -1.77
PTPRC-213ENST00000529828 TBC1D13Q9NVG8 400 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms