RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 IFT172Q9UG01 1749 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 FAM237AA0A1B0GTK4 181 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 DYTNA2CJ06 578 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 SPTLC2O15270 562 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 ATP9AO75110 1047 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 CLASP2O75122 1294 aaKnown RBP6.26□□□□□ -1.41
CD44-225ENST00000527326 PEX11AO75192 247 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 SERPINB7O75635 380 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 PDE5AO76074 875 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 SUN1O94901 812 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 UBOX5O94941 541 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 GSTT2P0CG29 244 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 GSTT2BP0CG30 244 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 TSPY4P0CV99 314 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 TSPY10P0CW01 314 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 CCNB1P14635 433 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 CPA1P15085 419 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 TATP17735 454 aaPredicted RBP6.26□□□□□ -1.41
CD44-225ENST00000527326 GNAT2P19087 354 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 NFKBIAP25963 317 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 SARSP49591 514 aaKnown RBP6.26□□□□□ -1.41
CD44-225ENST00000527326 MSLNQ13421 630 aaPredicted RBP6.26□□□□□ -1.41
CD44-225ENST00000527326 SEPT6Q14141 434 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 PLS1Q14651 629 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 RRS1Q15050 365 aaKnown RBP6.26□□□□□ -1.41
CD44-225ENST00000527326 IMMTQ16891 758 aaKnown RBP6.26□□□□□ -1.41
CD44-225ENST00000527326 TRIM71Q2Q1W2 868 aaKnown RBP6.26□□□□□ -1.41
CD44-225ENST00000527326 ADCK5Q3MIX3 580 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 BOLA3Q53S33 107 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 ODF2Q5BJF6 829 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 SPDYCQ5MJ68 293 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 SYCP2LQ5T4T6 812 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 DEPDC1Q5TB30 811 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 IL23RQ5VWK5 629 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 HAUS3Q68CZ6 603 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 DUS1LQ6P1R4 473 aaKnown RBP6.26□□□□□ -1.41
CD44-225ENST00000527326 SLCO4C1Q6ZQN7 724 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 MARK2Q7KZI7 788 aaKnown RBP6.26□□□□□ -1.41
CD44-225ENST00000527326 ZNF804AQ7Z570 1209 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 CROCCP2Q86T23 111 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 UNC5CLQ8IV45 518 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 LINC00301Q8NCQ3 95 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 PPFIBP2Q8ND30 876 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 SPATA4Q8NEY3 305 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 UHMK1Q8TAS1 419 aaKnown RBP6.26□□□□□ -1.41
CD44-225ENST00000527326 FNDC8Q8TC99 324 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 APPBP2Q92624 585 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 CLP1Q92989 425 aaKnown RBP6.26□□□□□ -1.41
CD44-225ENST00000527326 CDK5RAP3Q96JB5 506 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 CAPZA3Q96KX2 299 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 ZNF317Q96PQ6 595 aaPredicted RBP6.26□□□□□ -1.41
CD44-225ENST00000527326 SPOCK3Q9BQ16 436 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 IL25Q9H293 177 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 DCLRE1BQ9H816 532 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 ETNK2Q9NVF9 386 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 ARHGEF38Q9NXL2 777 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 DDX43Q9NXZ2 648 aaKnown RBP6.26□□□□□ -1.41
CD44-225ENST00000527326 ZMAT5Q9UDW3 170 aaKnown RBP6.26□□□□□ -1.41
CD44-225ENST00000527326 DMGDHQ9UI17 866 aaKnown RBP6.26□□□□□ -1.41
CD44-225ENST00000527326 MTUS1Q9ULD2 1270 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 CCPG1Q9ULG6 757 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 GUCA1BQ9UMX6 200 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 STK38LQ9Y2H1 464 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 TBC1D30Q9Y2I9 924 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 NFE2L3Q9Y4A8 694 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 HYOU1Q9Y4L1 999 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 PCDHB2Q9Y5E7 798 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 GJA3Q9Y6H8 435 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 USP3Q9Y6I4 520 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 SLC30A1Q9Y6M5 507 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 ADGRB1O14514 1584 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 MED1Q15648 1581 aaPredicted RBP6.26□□□□□ -1.41
CD44-225ENST00000527326 VWDEQ8N2E2 1590 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 AKAP12Q02952 1782 aa6.26□□□□□ -1.41
CD44-225ENST00000527326 USP42Q9H9J4 1324 aaKnown RBP6.25□□□□□ -1.41
CD44-225ENST00000527326 LRRC7Q96NW7 1537 aa6.25□□□□□ -1.41
CD44-225ENST00000527326 ANKRD26Q9UPS8 1709 aa6.25□□□□□ -1.41
CD44-225ENST00000527326 hCG_2014768A0A024R1R8 64 aa6.25□□□□□ -1.41
CD44-225ENST00000527326 DCDC2BA2VCK2 349 aa6.25□□□□□ -1.41
CD44-225ENST00000527326 SIGLEC16A6NMB1 481 aa6.25□□□□□ -1.41
CD44-225ENST00000527326 EIF4E1BA6NMX2 242 aaKnown RBP6.25□□□□□ -1.41
CD44-225ENST00000527326 NEURL1BA8MQ27 555 aa6.25□□□□□ -1.41
CD44-225ENST00000527326 UBAP1LF5GYI3 381 aa6.25□□□□□ -1.41
CD44-225ENST00000527326 CTNND1O60716 968 aaKnown RBP6.25□□□□□ -1.41
CD44-225ENST00000527326 STK10O94804 968 aaKnown RBP6.25□□□□□ -1.41
CD44-225ENST00000527326 NDUFA10O95299 355 aa6.25□□□□□ -1.41
CD44-225ENST00000527326 OAS1P00973 400 aaKnown RBP6.25□□□□□ -1.41
CD44-225ENST00000527326 PYGMP11217 842 aa6.25□□□□□ -1.41
CD44-225ENST00000527326 FOSL1P15407 271 aa6.25□□□□□ -1.41
CD44-225ENST00000527326 PFKFB1P16118 471 aa6.25□□□□□ -1.41
CD44-225ENST00000527326 PTPN2P17706 415 aa6.25□□□□□ -1.41
CD44-225ENST00000527326 RPL17P18621 184 aaKnown RBP6.25□□□□□ -1.41
CD44-225ENST00000527326 SERPINB3P29508 390 aa6.25□□□□□ -1.41
CD44-225ENST00000527326 CEBPAP49715 358 aaPredicted RBP6.25□□□□□ -1.41
CD44-225ENST00000527326 TMED10P49755 219 aaKnown RBP6.25□□□□□ -1.41
CD44-225ENST00000527326 EIF3BP55884 814 aaKnown RBP6.25□□□□□ -1.41
CD44-225ENST00000527326 ERVK-24P63145 666 aa6.25□□□□□ -1.41
CD44-225ENST00000527326 GTF2IP78347 998 aa6.25□□□□□ -1.41
CD44-225ENST00000527326 CTAG1AP78358 180 aa6.25□□□□□ -1.41
CD44-225ENST00000527326 CLDN10P78369 228 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms