RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 CYP27B1O15528 508 aa3.38□□□□□ -1.87
CD44-216ENST00000525293 FSBPO95073 299 aa3.38□□□□□ -1.87
CD44-216ENST00000525293 FKBP9O95302 570 aa3.38□□□□□ -1.87
CD44-216ENST00000525293 SLPIP03973 132 aa3.38□□□□□ -1.87
CD44-216ENST00000525293 GAAP10253 952 aa3.38□□□□□ -1.87
CD44-216ENST00000525293 MYCLP1P12525 358 aaPredicted RBP3.38□□□□□ -1.87
CD44-216ENST00000525293 LSP1P33241 339 aa3.38□□□□□ -1.87
CD44-216ENST00000525293 ADCYAP1R1P41586 468 aa3.38□□□□□ -1.87
CD44-216ENST00000525293 LSSP48449 732 aa3.38□□□□□ -1.87
CD44-216ENST00000525293 OCRLQ01968 901 aa3.38□□□□□ -1.87
CD44-216ENST00000525293 CRHR2Q13324 411 aa3.38□□□□□ -1.87
CD44-216ENST00000525293 RRP1BQ14684 758 aaKnown RBP3.38□□□□□ -1.87
CD44-216ENST00000525293 ELAVL1Q15717 326 aaKnown RBP3.38□□□□□ -1.87
CD44-216ENST00000525293 ZBTB41Q5SVQ8 909 aa3.38□□□□□ -1.87
CD44-216ENST00000525293 FKBP15Q5T1M5 1219 aa3.38□□□□□ -1.87
CD44-216ENST00000525293 FKBP9P1Q75LS8 142 aa3.38□□□□□ -1.87
CD44-216ENST00000525293 GSPT2Q8IYD1 628 aaKnown RBP3.38□□□□□ -1.87
CD44-216ENST00000525293 CMTM4Q8IZR5 234 aa3.38□□□□□ -1.87
CD44-216ENST00000525293 ANKRD35Q8N283 1001 aa3.38□□□□□ -1.87
CD44-216ENST00000525293 ZNF610Q8N9Z0 462 aa3.38□□□□□ -1.87
CD44-216ENST00000525293 FERMT2Q96AC1 680 aa3.38□□□□□ -1.87
CD44-216ENST00000525293 ARL8AQ96BM9 186 aa3.38□□□□□ -1.87
CD44-216ENST00000525293 MIEF2Q96C03 454 aa3.38□□□□□ -1.87
CD44-216ENST00000525293 MRIQ9BWK5 157 aa3.38□□□□□ -1.87
CD44-216ENST00000525293 ANO3Q9BYT9 981 aa3.38□□□□□ -1.87
CD44-216ENST00000525293 OSBPL6Q9BZF3 934 aa3.38□□□□□ -1.87
CD44-216ENST00000525293 C14orf93Q9H972 538 aaKnown RBP3.38□□□□□ -1.87
CD44-216ENST00000525293 AURKAIP1Q9NWT8 199 aaPredicted RBP3.38□□□□□ -1.87
CD44-216ENST00000525293 ING3Q9NXR8 418 aa3.38□□□□□ -1.87
CD44-216ENST00000525293 USP36Q9P275 1121 aaKnown RBP3.38□□□□□ -1.87
CD44-216ENST00000525293 USP35Q9P2H5 1018 aa3.38□□□□□ -1.87
CD44-216ENST00000525293 ING1Q9UK53 422 aaPredicted RBP3.38□□□□□ -1.87
CD44-216ENST00000525293 PCDHB6Q9Y5E3 794 aa3.38□□□□□ -1.87
CD44-216ENST00000525293 A0A087X0B3 334 aa3.37□□□□□ -1.87
CD44-216ENST00000525293 ST20-MTHFSA0A0A6YYL1 179 aa3.37□□□□□ -1.87
CD44-216ENST00000525293 KRTAP23-1A1A580 65 aa3.37□□□□□ -1.87
CD44-216ENST00000525293 GSG1L2A8MUP6 293 aa3.37□□□□□ -1.87
CD44-216ENST00000525293 ENPP3O14638 875 aa3.37□□□□□ -1.87
CD44-216ENST00000525293 NARSO43776 548 aaKnown RBP3.37□□□□□ -1.87
CD44-216ENST00000525293 PDE8AO60658 829 aa3.37□□□□□ -1.87
CD44-216ENST00000525293 RAB11FIP3O75154 756 aa3.37□□□□□ -1.87
CD44-216ENST00000525293 ZNF202O95125 648 aa3.37□□□□□ -1.87
CD44-216ENST00000525293 CDK11BP21127 795 aaKnown RBP3.37□□□□□ -1.87
CD44-216ENST00000525293 SCNN1GP51170 649 aa3.37□□□□□ -1.87
CD44-216ENST00000525293 HMGA2P52926 109 aa3.37□□□□□ -1.87
CD44-216ENST00000525293 GYS2P54840 703 aa3.37□□□□□ -1.87
CD44-216ENST00000525293 NPEPPSP55786 919 aa3.37□□□□□ -1.87
CD44-216ENST00000525293 PHC1P78364 1004 aa3.37□□□□□ -1.87
CD44-216ENST00000525293 CD69Q07108 199 aa3.37□□□□□ -1.87
CD44-216ENST00000525293 KLF10Q13118 480 aa3.37□□□□□ -1.87
CD44-216ENST00000525293 TUBA3CQ13748 450 aa3.37□□□□□ -1.87
CD44-216ENST00000525293 TERF2Q15554 542 aa3.37□□□□□ -1.87
CD44-216ENST00000525293 GPR158Q5T848 1215 aa3.37□□□□□ -1.87
CD44-216ENST00000525293 BROXQ5VW32 411 aa3.37□□□□□ -1.87
CD44-216ENST00000525293 TUBA3EQ6PEY2 450 aa3.37□□□□□ -1.87
CD44-216ENST00000525293 Q6ZRM9 215 aa3.37□□□□□ -1.87
CD44-216ENST00000525293 NOP9Q86U38 636 aaKnown RBP3.37□□□□□ -1.87
CD44-216ENST00000525293 C11orf74Q86VG3 221 aa3.37□□□□□ -1.87
CD44-216ENST00000525293 TMPRSS6Q8IU80 811 aa3.37□□□□□ -1.87
CD44-216ENST00000525293 ELOA2Q8IYF1 753 aaPredicted RBP3.37□□□□□ -1.87
CD44-216ENST00000525293 PIK3C3Q8NEB9 887 aa3.37□□□□□ -1.87
CD44-216ENST00000525293 PPP1R14CQ8TAE6 165 aa3.37□□□□□ -1.87
CD44-216ENST00000525293 CACTINQ8WUQ7 758 aaKnown RBP3.37□□□□□ -1.87
CD44-216ENST00000525293 PCED1AQ9H1Q7 454 aa3.37□□□□□ -1.87
CD44-216ENST00000525293 ZNF703Q9H7S9 590 aaPredicted RBP3.37□□□□□ -1.87
CD44-216ENST00000525293 EMC7Q9NPA0 242 aa3.37□□□□□ -1.87
CD44-216ENST00000525293 SLTMQ9NWH9 1034 aaKnown RBP eCLIP3.37□□□□□ -1.87
CD44-216ENST00000525293 MFAP3LO75121 409 aa3.36□□□□□ -1.87
CD44-216ENST00000525293 STC2O76061 302 aa3.36□□□□□ -1.87
CD44-216ENST00000525293 ALDH1A2O94788 518 aa3.36□□□□□ -1.87
CD44-216ENST00000525293 LY86O95711 162 aa3.36□□□□□ -1.87
CD44-216ENST00000525293 PFKMP08237 780 aa3.36□□□□□ -1.87
CD44-216ENST00000525293 CLEC2LP0C7M8 214 aa3.36□□□□□ -1.87
CD44-216ENST00000525293 XPAP23025 273 aaPredicted RBP3.36□□□□□ -1.87
CD44-216ENST00000525293 MAN2A2P49641 1150 aa3.36□□□□□ -1.87
CD44-216ENST00000525293 ABHD18Q0P651 414 aa3.36□□□□□ -1.87
CD44-216ENST00000525293 CNGB1Q14028 1251 aaPredicted RBP3.36□□□□□ -1.87
CD44-216ENST00000525293 SPIDRQ14159 915 aa3.36□□□□□ -1.87
CD44-216ENST00000525293 DDB1Q16531 1140 aa3.36□□□□□ -1.87
CD44-216ENST00000525293 ATP13A4Q4VNC1 1196 aa3.36□□□□□ -1.87
CD44-216ENST00000525293 FRMD7Q6ZUT3 714 aa3.36□□□□□ -1.87
CD44-216ENST00000525293 CXorf67Q86X51 503 aaPredicted RBP3.36□□□□□ -1.87
CD44-216ENST00000525293 CDYL2Q8N8U2 506 aa3.36□□□□□ -1.87
CD44-216ENST00000525293 ATXN2LQ8WWM7 1075 aaKnown RBP3.36□□□□□ -1.87
CD44-216ENST00000525293 GAB3Q8WWW8 586 aa3.36□□□□□ -1.87
CD44-216ENST00000525293 USP7Q93009 1102 aa3.36□□□□□ -1.87
CD44-216ENST00000525293 PGBD4Q96DM1 585 aa3.36□□□□□ -1.87
CD44-216ENST00000525293 ZNF512Q96ME7 567 aaPredicted RBP3.36□□□□□ -1.87
CD44-216ENST00000525293 GPR87Q9BY21 358 aa3.36□□□□□ -1.87
CD44-216ENST00000525293 PARPBPQ9NWS1 579 aa3.36□□□□□ -1.87
CD44-216ENST00000525293 CEP72Q9P209 647 aa3.36□□□□□ -1.87
CD44-216ENST00000525293 KCNG1Q9UIX4 513 aa3.36□□□□□ -1.87
CD44-216ENST00000525293 NOC2LQ9Y3T9 749 aaKnown RBP3.36□□□□□ -1.87
CD44-216ENST00000525293 TBX22Q9Y458 520 aa3.36□□□□□ -1.87
CD44-216ENST00000525293 XDHP47989 1333 aa3.36□□□□□ -1.87
CD44-216ENST00000525293 TLDC2A0PJX2 215 aa3.35□□□□□ -1.87
CD44-216ENST00000525293 MTSS1O43312 755 aa3.35□□□□□ -1.87
CD44-216ENST00000525293 MCM7P33993 719 aa3.35□□□□□ -1.87
CD44-216ENST00000525293 MANFP55145 182 aaKnown RBP3.35□□□□□ -1.87
CD44-216ENST00000525293 MGAT5Q09328 741 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms