RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 HOXA2O43364 376 aa10.4□□□□□ -0.74
HDAC3-215ENST00000519474 OFD1O75665 1012 aa10.4□□□□□ -0.74
HDAC3-215ENST00000519474 FGF18O76093 207 aa10.4□□□□□ -0.74
HDAC3-215ENST00000519474 CLSTN1O94985 981 aa10.4□□□□□ -0.74
HDAC3-215ENST00000519474 CHRM1P11229 460 aaPredicted RBP10.4□□□□□ -0.74
HDAC3-215ENST00000519474 SFPQP23246 707 aaKnown RBP eCLIP10.4□□□□□ -0.74
HDAC3-215ENST00000519474 GLRA2P23416 452 aa10.4□□□□□ -0.74
HDAC3-215ENST00000519474 MCM2P49736 904 aa10.4□□□□□ -0.74
HDAC3-215ENST00000519474 FXR2P51116 673 aaKnown RBP eCLIP10.4□□□□□ -0.74
HDAC3-215ENST00000519474 PLCB3Q01970 1234 aa10.4□□□□□ -0.74
HDAC3-215ENST00000519474 DLX2Q07687 328 aaPredicted RBP10.4□□□□□ -0.74
HDAC3-215ENST00000519474 GNL2Q13823 731 aaKnown RBP10.4□□□□□ -0.74
HDAC3-215ENST00000519474 LONRF3Q496Y0 759 aa10.4□□□□□ -0.74
HDAC3-215ENST00000519474 TIGD5Q53EQ6 642 aa10.4□□□□□ -0.74
HDAC3-215ENST00000519474 TWF2Q6IBS0 349 aaKnown RBP10.4□□□□□ -0.74
HDAC3-215ENST00000519474 KCNT2Q6UVM3 1135 aa10.4□□□□□ -0.74
HDAC3-215ENST00000519474 AGMOQ6ZNB7 445 aa10.4□□□□□ -0.74
HDAC3-215ENST00000519474 MAEAQ7L5Y9 396 aa10.4□□□□□ -0.74
HDAC3-215ENST00000519474 ADGRD2Q7Z7M1 963 aa10.4□□□□□ -0.74
HDAC3-215ENST00000519474 RNF169Q8NCN4 708 aa10.4□□□□□ -0.74
HDAC3-215ENST00000519474 HELQQ8TDG4 1101 aa10.4□□□□□ -0.74
HDAC3-215ENST00000519474 ASAP3Q8TDY4 903 aa10.4□□□□□ -0.74
HDAC3-215ENST00000519474 LPPQ93052 612 aa10.4□□□□□ -0.74
HDAC3-215ENST00000519474 UHRF1Q96T88 793 aaPredicted RBP10.4□□□□□ -0.74
HDAC3-215ENST00000519474 IGFLR1Q9H665 355 aa10.4□□□□□ -0.74
HDAC3-215ENST00000519474 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.4□□□□□ -0.74
HDAC3-215ENST00000519474 AAASQ9NRG9 546 aa10.4□□□□□ -0.74
HDAC3-215ENST00000519474 FAM105AQ9NUU6 356 aa10.4□□□□□ -0.74
HDAC3-215ENST00000519474 DBR1Q9UK59 544 aaKnown RBP10.4□□□□□ -0.74
HDAC3-215ENST00000519474 NOL7Q9UMY1 257 aaKnown RBP10.4□□□□□ -0.74
HDAC3-215ENST00000519474 PIN4Q9Y237 131 aaKnown RBP10.4□□□□□ -0.74
HDAC3-215ENST00000519474 NLRC5Q86WI3 1866 aa10.4□□□□□ -0.75
HDAC3-215ENST00000519474 EYSQ5T1H1 3165 aa10.39□□□□□ -0.75
HDAC3-215ENST00000519474 GRXCR2A6NFK2 248 aa10.39□□□□□ -0.75
HDAC3-215ENST00000519474 TNFRSF10AO00220 468 aa10.39□□□□□ -0.75
HDAC3-215ENST00000519474 LINC01565O15544 149 aa10.39□□□□□ -0.75
HDAC3-215ENST00000519474 NCK2O43639 380 aa10.39□□□□□ -0.75
HDAC3-215ENST00000519474 SKIP12755 728 aa10.39□□□□□ -0.75
HDAC3-215ENST00000519474 MUTP22033 750 aa10.39□□□□□ -0.75
HDAC3-215ENST00000519474 KCNA5P22460 613 aa10.39□□□□□ -0.75
HDAC3-215ENST00000519474 AFF1P51825 1210 aaKnown RBP10.39□□□□□ -0.75
HDAC3-215ENST00000519474 UBE3AQ05086 875 aa10.39□□□□□ -0.75
HDAC3-215ENST00000519474 CUL4AQ13619 759 aa10.39□□□□□ -0.75
HDAC3-215ENST00000519474 LARP1BQ659C4 914 aaKnown RBP10.39□□□□□ -0.75
HDAC3-215ENST00000519474 IGSF22Q8N9C0 903 aa10.39□□□□□ -0.75
HDAC3-215ENST00000519474 MICAL1Q8TDZ2 1067 aa10.39□□□□□ -0.75
HDAC3-215ENST00000519474 RNF39Q9H2S5 420 aa10.39□□□□□ -0.75
HDAC3-215ENST00000519474 POLD4Q9HCU8 107 aa10.39□□□□□ -0.75
HDAC3-215ENST00000519474 CD320Q9NPF0 282 aa10.39□□□□□ -0.75
HDAC3-215ENST00000519474 GPRC5CQ9NQ84 441 aa10.39□□□□□ -0.75
HDAC3-215ENST00000519474 AGPAT5Q9NUQ2 364 aa10.39□□□□□ -0.75
HDAC3-215ENST00000519474 LRWD1Q9UFC0 647 aa10.39□□□□□ -0.75
HDAC3-215ENST00000519474 PCDHB2Q9Y5E7 798 aa10.39□□□□□ -0.75
HDAC3-215ENST00000519474 PCDHGC5Q9Y5F6 944 aa10.39□□□□□ -0.75
HDAC3-215ENST00000519474 RALGAPA2Q2PPJ7 1873 aa10.38□□□□□ -0.75
HDAC3-215ENST00000519474 COL4A4P53420 1690 aaPredicted RBP10.38□□□□□ -0.75
HDAC3-215ENST00000519474 NT5C1B-RDH14C9J2C7 533 aa10.38□□□□□ -0.75
HDAC3-215ENST00000519474 H3BQ06 376 aaPredicted RBP10.38□□□□□ -0.75
HDAC3-215ENST00000519474 FSCN2O14926 492 aa10.38□□□□□ -0.75
HDAC3-215ENST00000519474 USO1O60763 962 aaKnown RBP10.38□□□□□ -0.75
HDAC3-215ENST00000519474 CSPG5O95196 566 aa10.38□□□□□ -0.75
HDAC3-215ENST00000519474 LAG3P18627 525 aa10.38□□□□□ -0.75
HDAC3-215ENST00000519474 CYP11B2P19099 503 aa10.38□□□□□ -0.75
HDAC3-215ENST00000519474 CDC25AP30304 524 aa10.38□□□□□ -0.75
HDAC3-215ENST00000519474 AXLP30530 894 aa10.38□□□□□ -0.75
HDAC3-215ENST00000519474 DEKP35659 375 aaKnown RBP10.38□□□□□ -0.75
HDAC3-215ENST00000519474 CCT6AP40227 531 aaKnown RBP10.38□□□□□ -0.75
HDAC3-215ENST00000519474 PBX3P40426 434 aa10.38□□□□□ -0.75
HDAC3-215ENST00000519474 CAPSQ13938 189 aa10.38□□□□□ -0.75
HDAC3-215ENST00000519474 TFDP1Q14186 410 aa10.38□□□□□ -0.75
HDAC3-215ENST00000519474 AMHR2Q16671 573 aa10.38□□□□□ -0.75
HDAC3-215ENST00000519474 MCTP1Q6DN14 999 aa10.38□□□□□ -0.75
HDAC3-215ENST00000519474 POTEGQ6S5H5 508 aa10.38□□□□□ -0.75
HDAC3-215ENST00000519474 EP400NLQ6ZTU2 488 aa10.38□□□□□ -0.75
HDAC3-215ENST00000519474 RBM23Q86U06 439 aaKnown RBP10.38□□□□□ -0.75
HDAC3-215ENST00000519474 THNSL1Q8IYQ7 743 aa10.38□□□□□ -0.75
HDAC3-215ENST00000519474 ABI1Q8IZP0 508 aa10.38□□□□□ -0.75
HDAC3-215ENST00000519474 SMG8Q8ND04 991 aaKnown RBP10.38□□□□□ -0.75
HDAC3-215ENST00000519474 ERMNQ8TAM6 284 aa10.38□□□□□ -0.75
HDAC3-215ENST00000519474 MRPS27Q92552 414 aaKnown RBP10.38□□□□□ -0.75
HDAC3-215ENST00000519474 CPB2Q96IY4 423 aa10.38□□□□□ -0.75
HDAC3-215ENST00000519474 MMTAG2Q9BU76 263 aaKnown RBP10.38□□□□□ -0.75
HDAC3-215ENST00000519474 NFKBIZQ9BYH8 718 aa10.38□□□□□ -0.75
HDAC3-215ENST00000519474 NRDE2Q9H7Z3 1164 aa10.38□□□□□ -0.75
HDAC3-215ENST00000519474 MIOSQ9NXC5 875 aa10.38□□□□□ -0.75
HDAC3-215ENST00000519474 CLDND1Q9NY35 253 aa10.38□□□□□ -0.75
HDAC3-215ENST00000519474 SPG21Q9NZD8 308 aa10.38□□□□□ -0.75
HDAC3-215ENST00000519474 KIAA1024Q9UPX6 916 aa10.38□□□□□ -0.75
HDAC3-215ENST00000519474 SMC3Q9UQE7 1217 aa10.38□□□□□ -0.75
HDAC3-215ENST00000519474 LZTS1Q9Y250 596 aa10.38□□□□□ -0.75
HDAC3-215ENST00000519474 KIF3AQ9Y496 699 aa10.38□□□□□ -0.75
HDAC3-215ENST00000519474 PRUNE2Q8WUY3 3088 aa10.38□□□□□ -0.75
HDAC3-215ENST00000519474 PP2D1A8MPX8 630 aa10.37□□□□□ -0.75
HDAC3-215ENST00000519474 PER2O15055 1255 aa10.37□□□□□ -0.75
HDAC3-215ENST00000519474 TSPAN1O60635 241 aa10.37□□□□□ -0.75
HDAC3-215ENST00000519474 DDHD2O94830 711 aa10.37□□□□□ -0.75
HDAC3-215ENST00000519474 GALTP07902 379 aa10.37□□□□□ -0.75
HDAC3-215ENST00000519474 IL9P15248 144 aa10.37□□□□□ -0.75
HDAC3-215ENST00000519474 ARF4P18085 180 aaPredicted RBP10.37□□□□□ -0.75
HDAC3-215ENST00000519474 NCLP19338 710 aaKnown RBP10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms