RNA–Protein interactions for RNA: ENST00000515572.5

SNF8-215, Transcript of SNF8, ESCRT-II complex subunit, humanhuman

TSL 2

Gene SNF8, Length 687 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNF8-215ENST00000515572 DDX12PQ92771 950 aa13.15□□□□□ -0.3
SNF8-215ENST00000515572 CCDC34Q96HJ3 373 aa13.15□□□□□ -0.3
SNF8-215ENST00000515572 SLC9A7Q96T83 725 aa13.15□□□□□ -0.3
SNF8-215ENST00000515572 NTPCRQ9BSD7 190 aaKnown RBP13.15□□□□□ -0.3
SNF8-215ENST00000515572 PARVGQ9HBI0 331 aa13.15□□□□□ -0.3
SNF8-215ENST00000515572 CHST12Q9NRB3 414 aa13.15□□□□□ -0.3
SNF8-215ENST00000515572 C1orf112Q9NSG2 853 aa13.15□□□□□ -0.3
SNF8-215ENST00000515572 PRMT7Q9NVM4 692 aaPredicted RBP13.15□□□□□ -0.3
SNF8-215ENST00000515572 RNF216Q9NWF9 866 aaPredicted RBP13.15□□□□□ -0.3
SNF8-215ENST00000515572 SLC4A7Q9Y6M7 1214 aa13.15□□□□□ -0.3
SNF8-215ENST00000515572 PTPRSQ13332 1948 aa13.15□□□□□ -0.3
SNF8-215ENST00000515572 NPHP3-ACAD11A0A0J9YXS1 232 aa13.14□□□□□ -0.31
SNF8-215ENST00000515572 DENND3A2RUS2 1198 aa13.14□□□□□ -0.31
SNF8-215ENST00000515572 CCDC169A6NNP5 214 aa13.14□□□□□ -0.31
SNF8-215ENST00000515572 ZSCAN20P17040 1043 aaPredicted RBP13.14□□□□□ -0.31
SNF8-215ENST00000515572 AXLP30530 894 aa13.14□□□□□ -0.31
SNF8-215ENST00000515572 ABCD1P33897 745 aa13.14□□□□□ -0.31
SNF8-215ENST00000515572 NPTX2P47972 431 aa13.14□□□□□ -0.31
SNF8-215ENST00000515572 WDR5P61964 334 aaKnown RBP13.14□□□□□ -0.31
SNF8-215ENST00000515572 MBTD1Q05BQ5 628 aa13.14□□□□□ -0.31
SNF8-215ENST00000515572 TCTN1Q2MV58 587 aa13.14□□□□□ -0.31
SNF8-215ENST00000515572 CNNM4Q6P4Q7 775 aa13.14□□□□□ -0.31
SNF8-215ENST00000515572 SPIRE2Q8WWL2 714 aa13.14□□□□□ -0.31
SNF8-215ENST00000515572 PRIMPOLQ96LW4 560 aa13.14□□□□□ -0.31
SNF8-215ENST00000515572 GBP4Q96PP9 640 aa13.14□□□□□ -0.31
SNF8-215ENST00000515572 TSPYL2Q9H2G4 693 aaPredicted RBP13.14□□□□□ -0.31
SNF8-215ENST00000515572 TMX1Q9H3N1 280 aa13.14□□□□□ -0.31
SNF8-215ENST00000515572 MINDY3Q9H8M7 445 aa13.14□□□□□ -0.31
SNF8-215ENST00000515572 KMT5AQ9NQR1 393 aa13.14□□□□□ -0.31
SNF8-215ENST00000515572 RGS18Q9NS28 235 aa13.14□□□□□ -0.31
SNF8-215ENST00000515572 AGPAT5Q9NUQ2 364 aa13.14□□□□□ -0.31
SNF8-215ENST00000515572 DACT1Q9NYF0 836 aa13.14□□□□□ -0.31
SNF8-215ENST00000515572 CXXC1Q9P0U4 656 aaPredicted RBP13.14□□□□□ -0.31
SNF8-215ENST00000515572 SEL1LQ9UBV2 794 aa13.14□□□□□ -0.31
SNF8-215ENST00000515572 GBF1Q92538 1859 aa13.13□□□□□ -0.31
SNF8-215ENST00000515572 SFI1A8K8P3 1242 aa13.13□□□□□ -0.31
SNF8-215ENST00000515572 K7ERI5 159 aa13.13□□□□□ -0.31
SNF8-215ENST00000515572 ENPP3O14638 875 aa13.13□□□□□ -0.31
SNF8-215ENST00000515572 ACTN4O43707 911 aaKnown RBP13.13□□□□□ -0.31
SNF8-215ENST00000515572 CSDE1O75534 798 aaKnown RBP13.13□□□□□ -0.31
SNF8-215ENST00000515572 MYL1P05976 194 aa13.13□□□□□ -0.31
SNF8-215ENST00000515572 ATP2A2P16615 1042 aaKnown RBP13.13□□□□□ -0.31
SNF8-215ENST00000515572 GAP43P17677 238 aa13.13□□□□□ -0.31
SNF8-215ENST00000515572 FGFR4P22455 802 aa13.13□□□□□ -0.31
SNF8-215ENST00000515572 CACNB1Q02641 598 aaPredicted RBP13.13□□□□□ -0.31
SNF8-215ENST00000515572 FAM160A1Q05DH4 1040 aa13.13□□□□□ -0.31
SNF8-215ENST00000515572 DSC3Q14574 896 aa13.13□□□□□ -0.31
SNF8-215ENST00000515572 MAPK6Q16659 721 aa13.13□□□□□ -0.31
SNF8-215ENST00000515572 FAM187BQ17R55 369 aa13.13□□□□□ -0.31
SNF8-215ENST00000515572 LRIT3Q3SXY7 679 aa13.13□□□□□ -0.31
SNF8-215ENST00000515572 PPP4R3CPQ6ZMV5 832 aa13.13□□□□□ -0.31
SNF8-215ENST00000515572 DYMQ7RTS9 669 aa13.13□□□□□ -0.31
SNF8-215ENST00000515572 CCDC65Q8IXS2 484 aa13.13□□□□□ -0.31
SNF8-215ENST00000515572 MYCT1Q8N699 235 aa13.13□□□□□ -0.31
SNF8-215ENST00000515572 SLC17A8Q8NDX2 589 aa13.13□□□□□ -0.31
SNF8-215ENST00000515572 KCNN1Q92952 543 aa13.13□□□□□ -0.31
SNF8-215ENST00000515572 DNAJC19Q96DA6 116 aa13.13□□□□□ -0.31
SNF8-215ENST00000515572 C7orf25Q9BPX7 421 aa13.13□□□□□ -0.31
SNF8-215ENST00000515572 TRAIPQ9BWF2 469 aa13.13□□□□□ -0.31
SNF8-215ENST00000515572 TRIM9Q9C026 710 aa13.13□□□□□ -0.31
SNF8-215ENST00000515572 ZHX3Q9H4I2 956 aa13.13□□□□□ -0.31
SNF8-215ENST00000515572 TMEM134Q9H6X4 195 aa13.13□□□□□ -0.31
SNF8-215ENST00000515572 POLD4Q9HCU8 107 aa13.13□□□□□ -0.31
SNF8-215ENST00000515572 ARHGAP28Q9P2N2 729 aa13.13□□□□□ -0.31
SNF8-215ENST00000515572 SERTAD1Q9UHV2 236 aa13.13□□□□□ -0.31
SNF8-215ENST00000515572 TTC3P53804 2025 aa13.13□□□□□ -0.31
SNF8-215ENST00000515572 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.12□□□□□ -0.31
SNF8-215ENST00000515572 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.12□□□□□ -0.31
SNF8-215ENST00000515572 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.12□□□□□ -0.31
SNF8-215ENST00000515572 TRAK2O60296 914 aa13.12□□□□□ -0.31
SNF8-215ENST00000515572 MGEA5O60502 916 aa13.12□□□□□ -0.31
SNF8-215ENST00000515572 TSPAN1O60635 241 aa13.12□□□□□ -0.31
SNF8-215ENST00000515572 ZNF202O95125 648 aa13.12□□□□□ -0.31
SNF8-215ENST00000515572 MAPTP10636 758 aaKnown RBP13.12□□□□□ -0.31
SNF8-215ENST00000515572 SKIP12755 728 aa13.12□□□□□ -0.31
SNF8-215ENST00000515572 IDEP14735 1019 aa13.12□□□□□ -0.31
SNF8-215ENST00000515572 NCKAP1LP55160 1127 aa13.12□□□□□ -0.31
SNF8-215ENST00000515572 LONRF3Q496Y0 759 aa13.12□□□□□ -0.31
SNF8-215ENST00000515572 TPRNQ4KMQ1 711 aa13.12□□□□□ -0.31
SNF8-215ENST00000515572 KANK3Q6NY19 840 aa13.12□□□□□ -0.31
SNF8-215ENST00000515572 NOTUMQ6P988 496 aa13.12□□□□□ -0.31
SNF8-215ENST00000515572 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.12□□□□□ -0.31
SNF8-215ENST00000515572 SLC24A5Q71RS6 500 aa13.12□□□□□ -0.31
SNF8-215ENST00000515572 FAM178BQ8IXR5 827 aa13.12□□□□□ -0.31
SNF8-215ENST00000515572 FMR1NBQ8N0W7 255 aaPredicted RBP13.12□□□□□ -0.31
SNF8-215ENST00000515572 CNNM3Q8NE01 707 aa13.12□□□□□ -0.31
SNF8-215ENST00000515572 CCDC51Q96ER9 411 aa13.12□□□□□ -0.31
SNF8-215ENST00000515572 ADAM2Q99965 735 aa13.12□□□□□ -0.31
SNF8-215ENST00000515572 KIFC3Q9BVG8 833 aa13.12□□□□□ -0.31
SNF8-215ENST00000515572 CCDC113Q9H0I3 377 aa13.12□□□□□ -0.31
SNF8-215ENST00000515572 FZD8Q9H461 694 aa13.12□□□□□ -0.31
SNF8-215ENST00000515572 GOLPH3LQ9H4A5 285 aa13.12□□□□□ -0.31
SNF8-215ENST00000515572 PIN4Q9Y237 131 aaKnown RBP13.12□□□□□ -0.31
SNF8-215ENST00000515572 ADGRA3Q8IWK6 1321 aa13.12□□□□□ -0.31
SNF8-215ENST00000515572 CNTNAP2Q9UHC6 1331 aa13.12□□□□□ -0.31
SNF8-215ENST00000515572 FRMD3A2A2Y4 597 aa13.11□□□□□ -0.31
SNF8-215ENST00000515572 C9IYK1 514 aa13.11□□□□□ -0.31
SNF8-215ENST00000515572 ACKR2O00590 384 aa13.11□□□□□ -0.31
SNF8-215ENST00000515572 SLC16A4O15374 487 aa13.11□□□□□ -0.31
SNF8-215ENST00000515572 PRKCBP05771 671 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms