RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 PCMTD1Q96MG8 357 aaPredicted RBP17.52■□□□□ 0.4
NUP54-214ENST00000514307 INTS13Q9NVM9 706 aa17.52■□□□□ 0.4
NUP54-214ENST00000514307 NRCAMQ92823 1304 aa17.51■□□□□ 0.39
NUP54-214ENST00000514307 KIAA1217Q5T5P2 1943 aa17.51■□□□□ 0.39
NUP54-214ENST00000514307 MYL3P08590 195 aa17.51■□□□□ 0.39
NUP54-214ENST00000514307 HSPA1AP0DMV8 641 aaKnown RBP17.51■□□□□ 0.39
NUP54-214ENST00000514307 HSPA1BP0DMV9 641 aaKnown RBP17.51■□□□□ 0.39
NUP54-214ENST00000514307 RARBP10826 455 aa17.51■□□□□ 0.39
NUP54-214ENST00000514307 GARTP22102 1010 aa17.51■□□□□ 0.39
NUP54-214ENST00000514307 PTGS1P23219 599 aa17.51■□□□□ 0.39
NUP54-214ENST00000514307 PBX1P40424 430 aa17.51■□□□□ 0.39
NUP54-214ENST00000514307 GJA9P57773 515 aa17.51■□□□□ 0.39
NUP54-214ENST00000514307 IGBP1P78318 339 aa17.51■□□□□ 0.39
NUP54-214ENST00000514307 MAP2K1Q02750 393 aaPredicted RBP17.51■□□□□ 0.39
NUP54-214ENST00000514307 TBX2Q13207 712 aaPredicted RBP17.51■□□□□ 0.39
NUP54-214ENST00000514307 FSCN1Q16658 493 aaKnown RBP17.51■□□□□ 0.39
NUP54-214ENST00000514307 ARMCX5Q6P1M9 558 aa17.51■□□□□ 0.39
NUP54-214ENST00000514307 USP37Q86T82 979 aa17.51■□□□□ 0.39
NUP54-214ENST00000514307 ZSCAN30Q86W11 494 aa17.51■□□□□ 0.39
NUP54-214ENST00000514307 LRRC8AQ8IWT6 810 aa17.51■□□□□ 0.39
NUP54-214ENST00000514307 FAM186BQ8IYM0 893 aa17.51■□□□□ 0.39
NUP54-214ENST00000514307 RAET1EQ8TD07 263 aa17.51■□□□□ 0.39
NUP54-214ENST00000514307 ASAP3Q8TDY4 903 aa17.51■□□□□ 0.39
NUP54-214ENST00000514307 PXYLP1Q8TE99 480 aa17.51■□□□□ 0.39
NUP54-214ENST00000514307 TRIB2Q92519 343 aa17.51■□□□□ 0.39
NUP54-214ENST00000514307 BICD1Q96G01 975 aa17.51■□□□□ 0.39
NUP54-214ENST00000514307 ERGIC2Q96RQ1 377 aa17.51■□□□□ 0.39
NUP54-214ENST00000514307 AKR1B15C9JRZ8 316 aaPredicted RBP17.5■□□□□ 0.39
NUP54-214ENST00000514307 ZNF286BP0CG31 522 aa17.5■□□□□ 0.39
NUP54-214ENST00000514307 SRGAP2CP0DJJ0 459 aa17.5■□□□□ 0.39
NUP54-214ENST00000514307 CYBAP13498 195 aa17.5■□□□□ 0.39
NUP54-214ENST00000514307 MSNP26038 577 aaKnown RBP17.5■□□□□ 0.39
NUP54-214ENST00000514307 LIG4P49917 911 aa17.5■□□□□ 0.39
NUP54-214ENST00000514307 CYP2J2P51589 502 aa17.5■□□□□ 0.39
NUP54-214ENST00000514307 NKX3-2P78367 333 aa17.5■□□□□ 0.39
NUP54-214ENST00000514307 CACNB2Q08289 660 aaPredicted RBP17.5■□□□□ 0.39
NUP54-214ENST00000514307 GRIK4Q16099 956 aa17.5■□□□□ 0.39
NUP54-214ENST00000514307 GNASQ5JWF2 1037 aa17.5■□□□□ 0.39
NUP54-214ENST00000514307 MTHFD1LQ6UB35 978 aa17.5■□□□□ 0.39
NUP54-214ENST00000514307 ZNF397Q8NF99 534 aaPredicted RBP17.5■□□□□ 0.39
NUP54-214ENST00000514307 CD99L2Q8TCZ2 262 aa17.5■□□□□ 0.39
NUP54-214ENST00000514307 CCDC51Q96ER9 411 aa17.5■□□□□ 0.39
NUP54-214ENST00000514307 MAP7D2Q96T17 732 aa17.5■□□□□ 0.39
NUP54-214ENST00000514307 LOXHD1Q8IVV2 1947 aa17.5■□□□□ 0.39
NUP54-214ENST00000514307 STX10O60499 249 aa17.49■□□□□ 0.39
NUP54-214ENST00000514307 AKAP3O75969 853 aa17.49■□□□□ 0.39
NUP54-214ENST00000514307 C22orf31O95567 290 aa17.49■□□□□ 0.39
NUP54-214ENST00000514307 LDHAP00338 332 aaKnown RBP17.49■□□□□ 0.39
NUP54-214ENST00000514307 F2P00734 622 aa17.49■□□□□ 0.39
NUP54-214ENST00000514307 AFPP02771 609 aaKnown RBP17.49■□□□□ 0.39
NUP54-214ENST00000514307 PSEN2P49810 448 aa17.49■□□□□ 0.39
NUP54-214ENST00000514307 MFSD10Q14728 455 aa17.49■□□□□ 0.39
NUP54-214ENST00000514307 MAPK6Q16659 721 aa17.49■□□□□ 0.39
NUP54-214ENST00000514307 KIAA0753Q2KHM9 967 aa17.49■□□□□ 0.39
NUP54-214ENST00000514307 MIIPQ5JXC2 388 aa17.49■□□□□ 0.39
NUP54-214ENST00000514307 INTS8Q75QN2 995 aaKnown RBP17.49■□□□□ 0.39
NUP54-214ENST00000514307 RHPN2Q8IUC4 686 aa17.49■□□□□ 0.39
NUP54-214ENST00000514307 CNGA4Q8IV77 575 aa17.49■□□□□ 0.39
NUP54-214ENST00000514307 CCDC112Q8NEF3 446 aa17.49■□□□□ 0.39
NUP54-214ENST00000514307 MTG1Q9BT17 334 aaPredicted RBP17.49■□□□□ 0.39
NUP54-214ENST00000514307 EDEM3Q9BZQ6 932 aa17.49■□□□□ 0.39
NUP54-214ENST00000514307 ZKSCAN5Q9Y2L8 839 aa17.49■□□□□ 0.39
NUP54-214ENST00000514307 HNRNPDLO14979 420 aaKnown RBP17.48■□□□□ 0.39
NUP54-214ENST00000514307 ADCY6O43306 1168 aa17.48■□□□□ 0.39
NUP54-214ENST00000514307 PIGRP01833 764 aa17.48■□□□□ 0.39
NUP54-214ENST00000514307 HMGCRP04035 888 aa17.48■□□□□ 0.39
NUP54-214ENST00000514307 C6orf222P0C671 652 aaPredicted RBP17.48■□□□□ 0.39
NUP54-214ENST00000514307 PHKA2P46019 1235 aa17.48■□□□□ 0.39
NUP54-214ENST00000514307 ENPEPQ07075 957 aa17.48■□□□□ 0.39
NUP54-214ENST00000514307 CETN1Q12798 172 aa17.48■□□□□ 0.39
NUP54-214ENST00000514307 KCNH2Q12809 1159 aa17.48■□□□□ 0.39
NUP54-214ENST00000514307 MKRN4PQ13434 485 aaPredicted RBP17.48■□□□□ 0.39
NUP54-214ENST00000514307 CAPSQ13938 189 aa17.48■□□□□ 0.39
NUP54-214ENST00000514307 ZPBP2Q6X784 338 aa17.48■□□□□ 0.39
NUP54-214ENST00000514307 LRRC71Q8N4P6 559 aa17.48■□□□□ 0.39
NUP54-214ENST00000514307 RNF149Q8NC42 400 aa17.48■□□□□ 0.39
NUP54-214ENST00000514307 TRPV1Q8NER1 839 aa17.48■□□□□ 0.39
NUP54-214ENST00000514307 TRAPPC12Q8WVT3 735 aa17.48■□□□□ 0.39
NUP54-214ENST00000514307 POMGNT1Q8WZA1 660 aa17.48■□□□□ 0.39
NUP54-214ENST00000514307 NFKBIZQ9BYH8 718 aa17.48■□□□□ 0.39
NUP54-214ENST00000514307 UPF3AQ9H1J1 476 aaKnown RBP17.48■□□□□ 0.39
NUP54-214ENST00000514307 HSPBP1Q9NZL4 362 aa17.48■□□□□ 0.39
NUP54-214ENST00000514307 LUC7L2Q9Y383 392 aaKnown RBP17.48■□□□□ 0.39
NUP54-214ENST00000514307 ZMYM2Q9UBW7 1377 aa17.48■□□□□ 0.39
NUP54-214ENST00000514307 HAS3O00219 553 aa17.47■□□□□ 0.39
NUP54-214ENST00000514307 CHMP4BP1P59074 171 aa17.47■□□□□ 0.39
NUP54-214ENST00000514307 RBL2Q08999 1139 aa17.47■□□□□ 0.39
NUP54-214ENST00000514307 SYCP1Q15431 976 aa17.47■□□□□ 0.39
NUP54-214ENST00000514307 FIGNQ5HY92 759 aa17.47■□□□□ 0.39
NUP54-214ENST00000514307 TCERG1LQ5VWI1 586 aa17.47■□□□□ 0.39
NUP54-214ENST00000514307 NME8Q8N427 588 aa17.47■□□□□ 0.39
NUP54-214ENST00000514307 C7orf31Q8N865 590 aa17.47■□□□□ 0.39
NUP54-214ENST00000514307 CACTINQ8WUQ7 758 aaKnown RBP17.47■□□□□ 0.39
NUP54-214ENST00000514307 CPLX3Q8WVH0 158 aa17.47■□□□□ 0.39
NUP54-214ENST00000514307 BORCS6Q96GS4 357 aa17.47■□□□□ 0.39
NUP54-214ENST00000514307 PANX2Q96RD6 677 aa17.47■□□□□ 0.39
NUP54-214ENST00000514307 KIFC3Q9BVG8 833 aa17.47■□□□□ 0.39
NUP54-214ENST00000514307 MRPL4Q9BYD3 311 aaKnown RBP17.47■□□□□ 0.39
NUP54-214ENST00000514307 PCIF1Q9H4Z3 704 aa17.47■□□□□ 0.39
NUP54-214ENST00000514307 STYXL1Q9Y6J8 313 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms