RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 XRN1Q8IZH2 1706 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 MST1RQ04912 1400 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 SLC16A4O15374 487 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 ZNF662Q6ZS27 426 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 EPM2AIP1Q7L775 607 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 DNAAF5Q86Y56 855 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 HOMEZQ8IX15 550 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 ACTRT1Q8TDG2 376 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 SCFD1Q8WVM8 642 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 TNFRSF25Q93038 417 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 MED15Q96RN5 788 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 TGS1Q96RS0 853 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 SEPT9Q9UHD8 586 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 INTUQ9ULD6 942 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 TCP11X1B4DZS4 312 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 EPHB6O15197 1021 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 PLS3P13797 630 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 POLR2BP30876 1174 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 HSPA9P38646 679 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 MSH2P43246 934 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 DYNLT1P63172 113 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 CAV1Q03135 178 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 GNPTABQ3T906 1256 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 TBC1D16Q8TBP0 767 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 CNKSR2Q8WXI2 1034 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 RAPGEF5Q92565 580 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 SLC4A9Q96Q91 983 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 MTRQ99707 1265 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 NFAT5O94916 1531 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 LRRD1A4D1F6 860 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 CYP26A1O43174 497 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 RTN2O75298 545 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 MED24O75448 989 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 INHBAP08476 426 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 YWHAEP62258 255 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 RNASELQ05823 741 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 SPARCL1Q14515 664 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 CASC4Q6P4E1 433 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 UBR1Q8IWV7 1749 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 NUDT12Q9BQG2 462 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 TUFT1Q9NNX1 390 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 EIF2AK2P19525 551 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 KRT17Q04695 432 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 TTLL12Q14166 644 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 SLC29A2Q14542 456 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 PPP2R5AQ15172 486 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 DNAJC24Q6P3W2 148 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 CD248Q9HCU0 757 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 GDF3Q9NR23 364 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 ADAM22Q9P0K1 906 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 SLIT3O75094 1523 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 CCT8L1PA6NM43 557 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 TULP2O00295 520 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 IPO5O00410 1097 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 BAG2O95816 211 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 TTMPQ5BVD1 217 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 FAM160B2Q86V87 743 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 SYT2Q8N9I0 419 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 CFAP61Q8NHU2 1237 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 SNF8Q96H20 258 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 CARD9Q9H257 536 aa9.01□□□□□ -0.97
LIMCH1-216ENST00000512820 ZNF233A6NK53 670 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 SKOR1P84550 965 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 LONRF1Q17RB8 773 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 SLC10A5Q5PT55 438 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 KRT39Q6A163 491 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 HAUS1Q96CS2 278 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 CXorf56Q9H5V9 222 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 RIOX1Q9H6W3 641 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 AIPL1Q9NZN9 384 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 GOLGA8SH3BPF8 625 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 RNF8O76064 485 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 CASP4P49662 377 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 ERVK-9P63128 1117 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 EVX2Q03828 476 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 EPHA7Q15375 998 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 SCYL2Q6P3W7 929 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 CENPUQ71F23 418 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 SAAL1Q96ER3 474 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 GBP5Q96PP8 586 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 TDRD3Q9H7E2 651 aaKnown RBP9□□□□□ -0.97
LIMCH1-216ENST00000512820 ETNK1Q9HBU6 452 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 TACC3Q9Y6A5 838 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 ARHGAP42A6NI28 874 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 RSPH10B2B2RC85 870 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 MT-ND3P03897 115 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 P4HBP07237 508 aaKnown RBP9□□□□□ -0.97
LIMCH1-216ENST00000512820 RSPH10BP0C881 870 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 COMTP21964 271 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 MKRN4PQ13434 485 aaPredicted RBP9□□□□□ -0.97
LIMCH1-216ENST00000512820 KRT81Q14533 505 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 CCDC14Q49A88 953 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 RFX6Q8HWS3 928 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 C3orf20Q8ND61 904 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 RNF25Q96BH1 459 aaPredicted RBP9□□□□□ -0.97
LIMCH1-216ENST00000512820 C11orf70Q9BRQ4 267 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 FAM53CQ9NYF3 392 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 CLDN3O15551 220 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 DCTN3O75935 186 aa9□□□□□ -0.97
LIMCH1-216ENST00000512820 TMEM191BP0C7N4 346 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms