RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 CTDNEP1O95476 244 aa8.99□□□□□ -0.97
SCN1A-207ENST00000507401 TDP2O95551 362 aa8.99□□□□□ -0.97
SCN1A-207ENST00000507401 BMP1P13497 986 aa8.99□□□□□ -0.97
SCN1A-207ENST00000507401 BMPR1AP36894 532 aa8.99□□□□□ -0.97
SCN1A-207ENST00000507401 NEK4P51957 841 aa8.99□□□□□ -0.97
SCN1A-207ENST00000507401 FAM189BP81408 668 aa8.99□□□□□ -0.97
SCN1A-207ENST00000507401 GPM6BQ13491 265 aa8.99□□□□□ -0.97
SCN1A-207ENST00000507401 ME3Q16798 604 aa8.99□□□□□ -0.97
SCN1A-207ENST00000507401 NAALADL2Q58DX5 795 aa8.99□□□□□ -0.97
SCN1A-207ENST00000507401 XKR3Q5GH77 459 aa8.99□□□□□ -0.97
SCN1A-207ENST00000507401 EFCAB12Q6NXP0 572 aa8.99□□□□□ -0.97
SCN1A-207ENST00000507401 NEK8Q86SG6 692 aa8.99□□□□□ -0.97
SCN1A-207ENST00000507401 NPAS4Q8IUM7 802 aa8.99□□□□□ -0.97
SCN1A-207ENST00000507401 METTL13Q8N6R0 699 aa8.99□□□□□ -0.97
SCN1A-207ENST00000507401 LINC01465Q8N7H1 131 aa8.99□□□□□ -0.97
SCN1A-207ENST00000507401 ETNPPLQ8TBG4 499 aa8.99□□□□□ -0.97
SCN1A-207ENST00000507401 GTF3C6Q969F1 213 aa8.99□□□□□ -0.97
SCN1A-207ENST00000507401 MRPL38Q96DV4 380 aaKnown RBP8.99□□□□□ -0.97
SCN1A-207ENST00000507401 UIMC1Q96RL1 719 aa8.99□□□□□ -0.97
SCN1A-207ENST00000507401 PLVAPQ9BX97 442 aa8.99□□□□□ -0.97
SCN1A-207ENST00000507401 UNC45AQ9H3U1 944 aa8.99□□□□□ -0.97
SCN1A-207ENST00000507401 ERVK-5Q9HDB9 667 aa8.99□□□□□ -0.97
SCN1A-207ENST00000507401 RGS18Q9NS28 235 aa8.99□□□□□ -0.97
SCN1A-207ENST00000507401 C1orf112Q9NSG2 853 aa8.99□□□□□ -0.97
SCN1A-207ENST00000507401 ORC3Q9UBD5 711 aaPredicted RBP8.99□□□□□ -0.97
SCN1A-207ENST00000507401 DDX25Q9UHL0 483 aaKnown RBP8.99□□□□□ -0.97
SCN1A-207ENST00000507401 MTUS1Q9ULD2 1270 aa8.99□□□□□ -0.97
SCN1A-207ENST00000507401 ST3GAL5Q9UNP4 418 aa8.99□□□□□ -0.97
SCN1A-207ENST00000507401 KCNJ14Q9UNX9 436 aa8.99□□□□□ -0.97
SCN1A-207ENST00000507401 NOC2LQ9Y3T9 749 aaKnown RBP8.99□□□□□ -0.97
SCN1A-207ENST00000507401 LOXHD1Q8IVV2 1947 aa8.99□□□□□ -0.97
SCN1A-207ENST00000507401 TTC28Q96AY4 2481 aa8.98□□□□□ -0.97
SCN1A-207ENST00000507401 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.98□□□□□ -0.97
SCN1A-207ENST00000507401 CCDC66A2RUB6 948 aa8.98□□□□□ -0.97
SCN1A-207ENST00000507401 NCK2O43639 380 aa8.98□□□□□ -0.97
SCN1A-207ENST00000507401 DKC1O60832 514 aaKnown RBP eCLIP8.98□□□□□ -0.973e-16■■■■■ 73
SCN1A-207ENST00000507401 GPR32O75388 356 aa8.98□□□□□ -0.97
SCN1A-207ENST00000507401 STBD1O95210 358 aa8.98□□□□□ -0.97
SCN1A-207ENST00000507401 FDPSP14324 419 aaKnown RBP8.98□□□□□ -0.97
SCN1A-207ENST00000507401 ZSCAN20P17040 1043 aaPredicted RBP8.98□□□□□ -0.97
SCN1A-207ENST00000507401 SARSP49591 514 aaKnown RBP8.98□□□□□ -0.97
SCN1A-207ENST00000507401 GABPB1Q06547 395 aaPredicted RBP8.98□□□□□ -0.97
SCN1A-207ENST00000507401 NFX1Q12986 1120 aaKnown RBP8.98□□□□□ -0.97
SCN1A-207ENST00000507401 PPP2R5CQ13362 524 aa8.98□□□□□ -0.97
SCN1A-207ENST00000507401 BTG3Q14201 252 aaPredicted RBP8.98□□□□□ -0.97
SCN1A-207ENST00000507401 RABEP1Q15276 862 aa8.98□□□□□ -0.97
SCN1A-207ENST00000507401 SKIV2LQ15477 1246 aaKnown RBP8.98□□□□□ -0.97
SCN1A-207ENST00000507401 TARBP2Q15633 366 aaKnown RBP8.98□□□□□ -0.97
SCN1A-207ENST00000507401 INF2Q27J81 1249 aa8.98□□□□□ -0.97
SCN1A-207ENST00000507401 LETM2Q2VYF4 491 aa8.98□□□□□ -0.97
SCN1A-207ENST00000507401 KRT40Q6A162 431 aa8.98□□□□□ -0.97
SCN1A-207ENST00000507401 SLC24A5Q71RS6 500 aa8.98□□□□□ -0.97
SCN1A-207ENST00000507401 MIER3Q7Z3K6 550 aa8.98□□□□□ -0.97
SCN1A-207ENST00000507401 EXOC8Q8IYI6 725 aa8.98□□□□□ -0.97
SCN1A-207ENST00000507401 CMTR2Q8IYT2 770 aaKnown RBP8.98□□□□□ -0.97
SCN1A-207ENST00000507401 MICALL1Q8N3F8 863 aa8.98□□□□□ -0.97
SCN1A-207ENST00000507401 GDPD5Q8WTR4 605 aa8.98□□□□□ -0.97
SCN1A-207ENST00000507401 LINC01599Q8WXQ3 324 aa8.98□□□□□ -0.97
SCN1A-207ENST00000507401 P2RX5Q93086 422 aa8.98□□□□□ -0.97
SCN1A-207ENST00000507401 LMAN2LQ9H0V9 348 aa8.98□□□□□ -0.97
SCN1A-207ENST00000507401 TMX1Q9H3N1 280 aa8.98□□□□□ -0.97
SCN1A-207ENST00000507401 ELAC1Q9H777 363 aaKnown RBP8.98□□□□□ -0.97
SCN1A-207ENST00000507401 KCNMB3Q9NPA1 279 aa8.98□□□□□ -0.97
SCN1A-207ENST00000507401 KIF3AQ9Y496 699 aa8.98□□□□□ -0.97
SCN1A-207ENST00000507401 SPTBN5Q9NRC6 3674 aaKnown RBP8.98□□□□□ -0.97
SCN1A-207ENST00000507401 ADGRA3Q8IWK6 1321 aa8.98□□□□□ -0.97
SCN1A-207ENST00000507401 RALGAPA2Q2PPJ7 1873 aa8.98□□□□□ -0.97
SCN1A-207ENST00000507401 BDP1A6H8Y1 2624 aa8.97□□□□□ -0.97
SCN1A-207ENST00000507401 IGKV6-21A0A0C4DH24 114 aa8.97□□□□□ -0.97
SCN1A-207ENST00000507401 TNFRSF10AO00220 468 aa8.97□□□□□ -0.97
SCN1A-207ENST00000507401 CHMP2AO43633 222 aa8.97□□□□□ -0.97
SCN1A-207ENST00000507401 BAG4O95429 457 aaKnown RBP8.97□□□□□ -0.97
SCN1A-207ENST00000507401 LINC00271P0C7V0 271 aa8.97□□□□□ -0.97
SCN1A-207ENST00000507401 NDUFV2P19404 249 aa8.97□□□□□ -0.97
SCN1A-207ENST00000507401 EIF4BP23588 611 aaKnown RBP8.97□□□□□ -0.97
SCN1A-207ENST00000507401 DNM2P50570 870 aa8.97□□□□□ -0.97
SCN1A-207ENST00000507401 NLRP11P59045 1033 aaKnown RBP8.97□□□□□ -0.97
SCN1A-207ENST00000507401 PSMC5P62195 406 aa8.97□□□□□ -0.97
SCN1A-207ENST00000507401 PRKCEQ02156 737 aa8.97□□□□□ -0.97
SCN1A-207ENST00000507401 TBC1D8BQ0IIM8 1120 aa8.97□□□□□ -0.97
SCN1A-207ENST00000507401 KIZQ2M2Z5 673 aa8.97□□□□□ -0.97
SCN1A-207ENST00000507401 LRSAM1Q6UWE0 723 aa8.97□□□□□ -0.97
SCN1A-207ENST00000507401 GAS2L3Q86XJ1 694 aa8.97□□□□□ -0.97
SCN1A-207ENST00000507401 SLFN12Q8IYM2 578 aa8.97□□□□□ -0.97
SCN1A-207ENST00000507401 NECAB1Q8N987 351 aa8.97□□□□□ -0.97
SCN1A-207ENST00000507401 BANK1Q8NDB2 785 aa8.97□□□□□ -0.97
SCN1A-207ENST00000507401 NSUN7Q8NE18 718 aaKnown RBP8.97□□□□□ -0.97
SCN1A-207ENST00000507401 TMEM40Q8WWA1 233 aa8.97□□□□□ -0.97
SCN1A-207ENST00000507401 CEP89Q96ST8 783 aa8.97□□□□□ -0.97
SCN1A-207ENST00000507401 JPH2Q9BR39 696 aaPredicted RBP8.97□□□□□ -0.97
SCN1A-207ENST00000507401 C11orf84Q9BUA3 381 aaPredicted RBP8.97□□□□□ -0.97
SCN1A-207ENST00000507401 ADAMTS10Q9H324 1103 aa8.97□□□□□ -0.97
SCN1A-207ENST00000507401 BRMS1Q9HCU9 246 aa8.97□□□□□ -0.97
SCN1A-207ENST00000507401 LRFN2Q9ULH4 789 aa8.97□□□□□ -0.97
SCN1A-207ENST00000507401 GINS2Q9Y248 185 aa8.97□□□□□ -0.97
SCN1A-207ENST00000507401 PPME1Q9Y570 386 aa8.97□□□□□ -0.97
SCN1A-207ENST00000507401 PCDHB7Q9Y5E2 793 aa8.97□□□□□ -0.97
SCN1A-207ENST00000507401 NCOR1O75376 2440 aa8.97□□□□□ -0.97
SCN1A-207ENST00000507401 XIRP2A4UGR9 3374 aa8.96□□□□□ -0.97
SCN1A-207ENST00000507401 NLRC5Q86WI3 1866 aa8.96□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms