RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 CASP10Q92851 521 aa12.92□□□□□ -0.34
HMGCS1-204ENST00000507293 TMEM143Q96AN5 459 aa12.92□□□□□ -0.34
HMGCS1-204ENST00000507293 TMEM169Q96HH4 297 aa12.92□□□□□ -0.34
HMGCS1-204ENST00000507293 NAP1L4Q99733 375 aaKnown RBP12.92□□□□□ -0.34
HMGCS1-204ENST00000507293 LXNQ9BS40 222 aa12.92□□□□□ -0.34
HMGCS1-204ENST00000507293 IFT122Q9HBG6 1241 aa12.92□□□□□ -0.34
HMGCS1-204ENST00000507293 AGPAT5Q9NUQ2 364 aa12.92□□□□□ -0.34
HMGCS1-204ENST00000507293 ORC3Q9UBD5 711 aaPredicted RBP12.92□□□□□ -0.34
HMGCS1-204ENST00000507293 INPP5FQ9Y2H2 1132 aa12.92□□□□□ -0.34
HMGCS1-204ENST00000507293 COL4A3BPQ9Y5P4 624 aa12.92□□□□□ -0.34
HMGCS1-204ENST00000507293 HCFC2Q9Y5Z7 792 aa12.92□□□□□ -0.34
HMGCS1-204ENST00000507293 MUC6Q6W4X9 2439 aa12.92□□□□□ -0.34
HMGCS1-204ENST00000507293 TDRD15B5MCY1 1934 aaKnown RBP12.92□□□□□ -0.34
HMGCS1-204ENST00000507293 DENND4AQ7Z401 1863 aa12.91□□□□□ -0.34
HMGCS1-204ENST00000507293 C5orf42Q9H799 3197 aa12.91□□□□□ -0.34
HMGCS1-204ENST00000507293 C2orf71A6NGG8 1288 aa12.91□□□□□ -0.34
HMGCS1-204ENST00000507293 CLASP2O75122 1294 aaKnown RBP12.91□□□□□ -0.34
HMGCS1-204ENST00000507293 RFC5P40937 340 aa12.91□□□□□ -0.34
HMGCS1-204ENST00000507293 RAB27AP51159 221 aa12.91□□□□□ -0.34
HMGCS1-204ENST00000507293 AK2P54819 239 aa12.91□□□□□ -0.34
HMGCS1-204ENST00000507293 EPHA7Q15375 998 aa12.91□□□□□ -0.34
HMGCS1-204ENST00000507293 NOMO2Q5JPE7 1267 aa12.91□□□□□ -0.34
HMGCS1-204ENST00000507293 TMEM173Q86WV6 379 aaPredicted RBP12.91□□□□□ -0.34
HMGCS1-204ENST00000507293 C4orf19Q8IY42 314 aa12.91□□□□□ -0.34
HMGCS1-204ENST00000507293 MRPL43Q8N983 215 aaKnown RBP12.91□□□□□ -0.34
HMGCS1-204ENST00000507293 PSPC1Q8WXF1 523 aaKnown RBP12.91□□□□□ -0.34
HMGCS1-204ENST00000507293 RSPH1Q8WYR4 309 aa12.91□□□□□ -0.34
HMGCS1-204ENST00000507293 WASF1Q92558 559 aa12.91□□□□□ -0.34
HMGCS1-204ENST00000507293 DYDC2Q96IM9 177 aa12.91□□□□□ -0.34
HMGCS1-204ENST00000507293 MFSD14AQ96MC6 490 aa12.91□□□□□ -0.34
HMGCS1-204ENST00000507293 ZBP1Q9H171 429 aa12.91□□□□□ -0.34
HMGCS1-204ENST00000507293 DHX33Q9H6R0 707 aaKnown RBP12.91□□□□□ -0.34
HMGCS1-204ENST00000507293 NRDE2Q9H7Z3 1164 aa12.91□□□□□ -0.34
HMGCS1-204ENST00000507293 TBC1D13Q9NVG8 400 aa12.91□□□□□ -0.34
HMGCS1-204ENST00000507293 RGL1Q9NZL6 768 aa12.91□□□□□ -0.34
HMGCS1-204ENST00000507293 PPME1Q9Y570 386 aa12.91□□□□□ -0.34
HMGCS1-204ENST00000507293 TMEM221A6NGB7 291 aa12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 M0R296 226 aa12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 ZNF623O75123 536 aa12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 OFD1O75665 1012 aa12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 LARGE1O95461 756 aa12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 SRGAP2CP0DJJ0 459 aa12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 HOXB8P17481 243 aaPredicted RBP12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 SP100P23497 879 aaPredicted RBP12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 YWHABP31946 246 aaKnown RBP12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 KRT2P35908 639 aa12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 ANAPC15P60006 121 aa12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 ZXDAP98168 799 aa12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 CYP4A11Q02928 519 aa12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 RNASELQ05823 741 aaKnown RBP12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 SPIRE1Q08AE8 756 aa12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 NR5A1Q13285 461 aa12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 CTTNQ14247 550 aaKnown RBP12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 EMC2Q15006 297 aa12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 ANKRD1Q15327 319 aa12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 TRIM67Q6ZTA4 783 aa12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 EXOC8Q8IYI6 725 aa12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 VPS52Q8N1B4 723 aa12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 NECAB1Q8N987 351 aa12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 BCL7CQ8WUZ0 217 aaPredicted RBP12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 PRPF31Q8WWY3 499 aaKnown RBP12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 AUTS2Q8WXX7 1259 aa12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 PGBD4Q96DM1 585 aa12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 FBXL18Q96ME1 805 aa12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 GBP3Q9H0R5 595 aa12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 MINDY3Q9H8M7 445 aa12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 DNAJB4Q9UDY4 337 aa12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 CDH22Q9UJ99 828 aa12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 PCDHB2Q9Y5E7 798 aa12.9□□□□□ -0.34
HMGCS1-204ENST00000507293 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.89□□□□□ -0.35
HMGCS1-204ENST00000507293 B4GALT3O60512 393 aa12.89□□□□□ -0.35
HMGCS1-204ENST00000507293 BAG4O95429 457 aaKnown RBP12.89□□□□□ -0.35
HMGCS1-204ENST00000507293 CXCL14O95715 111 aa12.89□□□□□ -0.35
HMGCS1-204ENST00000507293 GALTP07902 379 aa12.89□□□□□ -0.35
HMGCS1-204ENST00000507293 FDPSP14324 419 aaKnown RBP12.89□□□□□ -0.35
HMGCS1-204ENST00000507293 SLC11A1P49279 550 aa12.89□□□□□ -0.35
HMGCS1-204ENST00000507293 LAMTOR4Q0VGL1 99 aa12.89□□□□□ -0.35
HMGCS1-204ENST00000507293 BMS1Q14692 1282 aaKnown RBP12.89□□□□□ -0.35
HMGCS1-204ENST00000507293 TPRNQ4KMQ1 711 aa12.89□□□□□ -0.35
HMGCS1-204ENST00000507293 XKR9Q5GH70 373 aa12.89□□□□□ -0.35
HMGCS1-204ENST00000507293 AGMOQ6ZNB7 445 aa12.89□□□□□ -0.35
HMGCS1-204ENST00000507293 OTUD6AQ7L8S5 288 aa12.89□□□□□ -0.35
HMGCS1-204ENST00000507293 BMP8AQ7Z5Y6 402 aa12.89□□□□□ -0.35
HMGCS1-204ENST00000507293 SRGAP1Q7Z6B7 1085 aa12.89□□□□□ -0.35
HMGCS1-204ENST00000507293 DDX53Q86TM3 631 aaKnown RBP12.89□□□□□ -0.35
HMGCS1-204ENST00000507293 FERMT3Q86UX7 667 aa12.89□□□□□ -0.35
HMGCS1-204ENST00000507293 SLFN12Q8IYM2 578 aa12.89□□□□□ -0.35
HMGCS1-204ENST00000507293 TCP11Q8WWU5 503 aa12.89□□□□□ -0.35
HMGCS1-204ENST00000507293 TNFRSF25Q93038 417 aa12.89□□□□□ -0.35
HMGCS1-204ENST00000507293 IGSF21Q96ID5 467 aa12.89□□□□□ -0.35
HMGCS1-204ENST00000507293 KCNH6Q9H252 994 aa12.89□□□□□ -0.35
HMGCS1-204ENST00000507293 ZSWIM4Q9H7M6 989 aa12.89□□□□□ -0.35
HMGCS1-204ENST00000507293 BRMS1Q9HCU9 246 aa12.89□□□□□ -0.35
HMGCS1-204ENST00000507293 PLXNA3P51805 1871 aa12.89□□□□□ -0.35
HMGCS1-204ENST00000507293 C2orf16Q68DN1 1984 aa12.89□□□□□ -0.35
HMGCS1-204ENST00000507293 CARNS1A5YM72 827 aa12.88□□□□□ -0.35
HMGCS1-204ENST00000507293 ZBTB39O15060 712 aa12.88□□□□□ -0.35
HMGCS1-204ENST00000507293 GAS2O43903 313 aaKnown RBP12.88□□□□□ -0.35
HMGCS1-204ENST00000507293 CTSAP10619 480 aa12.88□□□□□ -0.35
HMGCS1-204ENST00000507293 FOSBP53539 338 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms