RNA–Protein interactions for RNA: ENST00000504120.3

PCDHA1-203, Transcript of protocadherin alpha 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA1, Length 5,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-203ENST00000504120 PASD1Q8IV76 773 aa17.64■□□□□ 0.42
PCDHA1-203ENST00000504120 LXNQ9BS40 222 aa17.64■□□□□ 0.42
PCDHA1-203ENST00000504120 TRIM4Q9C037 500 aa17.64■□□□□ 0.42
PCDHA1-203ENST00000504120 IP6K2Q9UHH9 426 aa17.64■□□□□ 0.42
PCDHA1-203ENST00000504120 NVLO15381 856 aaKnown RBP17.64■□□□□ 0.41
PCDHA1-203ENST00000504120 HSPA4LO95757 839 aa17.64■□□□□ 0.41
PCDHA1-203ENST00000504120 SLC12A1Q13621 1099 aa17.64■□□□□ 0.41
PCDHA1-203ENST00000504120 TRIM72Q6ZMU5 477 aa17.64■□□□□ 0.41
PCDHA1-203ENST00000504120 BEST2Q8NFU1 509 aa17.64■□□□□ 0.41
PCDHA1-203ENST00000504120 WNT8AQ9H1J5 351 aa17.64■□□□□ 0.41
PCDHA1-203ENST00000504120 FAM187AA6NFU0 413 aa17.64■□□□□ 0.41
PCDHA1-203ENST00000504120 HUS1O60921 280 aa17.64■□□□□ 0.41
PCDHA1-203ENST00000504120 PPFIA2O75334 1257 aa17.64■□□□□ 0.41
PCDHA1-203ENST00000504120 PMS2P54278 862 aa17.64■□□□□ 0.41
PCDHA1-203ENST00000504120 C12orf60Q5U649 245 aa17.64■□□□□ 0.41
PCDHA1-203ENST00000504120 SYT2Q8N9I0 419 aaPredicted RBP17.64■□□□□ 0.41
PCDHA1-203ENST00000504120 EIF2AK1Q9BQI3 630 aaKnown RBP17.64■□□□□ 0.41
PCDHA1-203ENST00000504120 GABBR1Q9UBS5 961 aa17.64■□□□□ 0.41
PCDHA1-203ENST00000504120 FBXO2Q9UK22 296 aaPredicted RBP17.64■□□□□ 0.41
PCDHA1-203ENST00000504120 CAPN11Q9UMQ6 739 aa17.64■□□□□ 0.41
PCDHA1-203ENST00000504120 CTIFO43310 598 aaKnown RBP17.64■□□□□ 0.41
PCDHA1-203ENST00000504120 SOX5P35711 763 aa17.64■□□□□ 0.41
PCDHA1-203ENST00000504120 TMPRSS15P98073 1019 aa17.64■□□□□ 0.41
PCDHA1-203ENST00000504120 PDCLQ13371 301 aa17.64■□□□□ 0.41
PCDHA1-203ENST00000504120 SCARF1Q14162 830 aa17.64■□□□□ 0.41
PCDHA1-203ENST00000504120 EP400NLQ6ZTU2 488 aa17.64■□□□□ 0.41
PCDHA1-203ENST00000504120 KLHL8Q9P2G9 620 aaPredicted RBP17.64■□□□□ 0.41
PCDHA1-203ENST00000504120 HERC5Q9UII4 1024 aaKnown RBP17.64■□□□□ 0.41
PCDHA1-203ENST00000504120 TPX2Q9ULW0 747 aaKnown RBP17.64■□□□□ 0.41
PCDHA1-203ENST00000504120 ATF5Q9Y2D1 282 aaPredicted RBP17.64■□□□□ 0.41
PCDHA1-203ENST00000504120 POLR1AO95602 1720 aaPredicted RBP17.64■□□□□ 0.41
PCDHA1-203ENST00000504120 TECPR2O15040 1411 aa17.64■□□□□ 0.41
PCDHA1-203ENST00000504120 FTLP02792 175 aaPredicted RBP17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 KRT7P08729 469 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 NFRKBQ6P4R8 1299 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 STOX1Q6ZVD7 989 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 TRAIPQ9BWF2 469 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 SLC8A2Q9UPR5 921 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 USP32Q8NFA0 1604 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 NBPF26B4DH59 902 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 GGCXP38435 758 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 TAF11Q15544 211 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 TERF2Q15554 542 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 SWSAP1Q6NVH7 229 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 NBPF10Q6P3W6 841 aaKnown RBP17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 SP8Q8IXZ3 490 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 NBPF15Q8N660 670 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 CHMP6Q96FZ7 201 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 SLITRK6Q9H5Y7 841 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 ELF1P32519 619 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 STAT3P40763 770 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 PAPOLAP51003 745 aaKnown RBP17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 AP3M2P53677 418 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 PHEXP78562 749 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 NFX1Q12986 1120 aaKnown RBP17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 EPHA7Q15375 998 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 PDXDC1Q6P996 788 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 TTC17Q96AE7 1141 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 SCOCQ9UIL1 159 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 SPDYE2BA6NHP3 402 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 SPDYE6P0CI01 402 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 SDC4P31431 198 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 TMCO4Q5TGY1 634 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 TSPYL2Q9H2G4 693 aaPredicted RBP17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 FNDC3AQ9Y2H6 1198 aaKnown RBP17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 ATP5HO75947 161 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 GGPS1O95749 300 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 MYL3P08590 195 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 MX2P20592 715 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 NFKBIAP25963 317 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 GNA15P30679 374 aa17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 MRPL4Q9BYD3 311 aaKnown RBP17.63■□□□□ 0.41
PCDHA1-203ENST00000504120 EPM2AIP1Q7L775 607 aaPredicted RBP17.62■□□□□ 0.41
PCDHA1-203ENST00000504120 CCSER1Q9C0I3 900 aa17.62■□□□□ 0.41
PCDHA1-203ENST00000504120 TMEM60Q9H2L4 133 aa17.62■□□□□ 0.41
PCDHA1-203ENST00000504120 DDX56Q9NY93 547 aaKnown RBP17.62■□□□□ 0.41
PCDHA1-203ENST00000504120 DNAJC8O75937 253 aaPredicted RBP17.62■□□□□ 0.41
PCDHA1-203ENST00000504120 EYA4O95677 639 aa17.62■□□□□ 0.41
PCDHA1-203ENST00000504120 NDUFAF2Q8N183 169 aa17.62■□□□□ 0.41
PCDHA1-203ENST00000504120 SRBD1Q8N5C6 995 aaKnown RBP17.62■□□□□ 0.41
PCDHA1-203ENST00000504120 RFFLQ8WZ73 363 aa17.62■□□□□ 0.41
PCDHA1-203ENST00000504120 FGD4Q96M96 766 aa17.62■□□□□ 0.41
PCDHA1-203ENST00000504120 POLR3FQ9H1D9 316 aaPredicted RBP17.62■□□□□ 0.41
PCDHA1-203ENST00000504120 UPF3AQ9H1J1 476 aaKnown RBP17.62■□□□□ 0.41
PCDHA1-203ENST00000504120 TAF1DQ9H5J8 278 aaPredicted RBP17.62■□□□□ 0.41
PCDHA1-203ENST00000504120 PREX1Q8TCU6 1659 aa17.62■□□□□ 0.41
PCDHA1-203ENST00000504120 PDXKO00764 312 aa17.62■□□□□ 0.41
PCDHA1-203ENST00000504120 TTLL4Q14679 1199 aa17.62■□□□□ 0.41
PCDHA1-203ENST00000504120 CCDC124Q96CT7 223 aaKnown RBP17.62■□□□□ 0.41
PCDHA1-203ENST00000504120 TUFT1Q9NNX1 390 aa17.62■□□□□ 0.41
PCDHA1-203ENST00000504120 G3BP2Q9UN86 482 aaKnown RBP17.62■□□□□ 0.41
PCDHA1-203ENST00000504120 CFLARO15519 480 aa17.62■□□□□ 0.41
PCDHA1-203ENST00000504120 OCRLQ01968 901 aa17.62■□□□□ 0.41
PCDHA1-203ENST00000504120 METTL16Q86W50 562 aaKnown RBP17.62■□□□□ 0.41
PCDHA1-203ENST00000504120 APOBEC3FQ8IUX4 373 aaKnown RBP17.62■□□□□ 0.41
PCDHA1-203ENST00000504120 RHOT1Q8IXI2 618 aa17.62■□□□□ 0.41
PCDHA1-203ENST00000504120 GPD1LQ8N335 351 aa17.62■□□□□ 0.41
PCDHA1-203ENST00000504120 SCG3Q8WXD2 468 aaKnown RBP17.62■□□□□ 0.41
PCDHA1-203ENST00000504120 LIMA1Q9UHB6 759 aaKnown RBP17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms