RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 PHLDB2Q86SQ0 1253 aa11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 ERICH1Q86X53 443 aa11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 NOA1Q8NC60 698 aaKnown RBP11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 WRNIP1Q96S55 665 aa11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 CASZ1Q86V15 1759 aa11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 CLDN3O15551 220 aa11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 IREB2P48200 963 aaKnown RBP11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 HERVK_113P62684 666 aa11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 TRIP13Q15645 432 aaPredicted RBP11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 CCDC125Q86Z20 511 aa11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 LMNTD2Q8IXW0 634 aa11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 VPS52Q8N1B4 723 aa11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 SLC35G2Q8TBE7 412 aa11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 RNPC3Q96LT9 517 aaKnown RBP11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 ACAD9Q9H845 621 aa11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 ZHX2Q9Y6X8 837 aa11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 LRRD1A4D1F6 860 aa11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 MSH4O15457 936 aa11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 EVI5O60447 810 aa11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 ECM2O94769 699 aaPredicted RBP11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 SLC9A1P19634 815 aa11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 TSNAXIP1Q2TAA8 658 aa11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 CYP4F22Q6NT55 531 aa11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 LRIG3Q6UXM1 1119 aa11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 KCTD6Q8NC69 237 aa11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 SAAL1Q96ER3 474 aa11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 MXRA8Q9BRK3 442 aa11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 RPAP3Q9H6T3 665 aaPredicted RBP11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 RBM12Q9NTZ6 932 aaKnown RBP11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 ZNRF3Q9ULT6 936 aa11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 P4HA2O15460 535 aa11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 INHBAP08476 426 aa11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 SREBF1P36956 1147 aa11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 GALCP54803 685 aa11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 PPP2R2AP63151 447 aa11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 ZNF211Q13398 564 aaPredicted RBP11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 RSRC2Q7L4I2 434 aaKnown RBP11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 MED10Q9BTT4 135 aa11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 NXF1Q9UBU9 619 aaKnown RBP11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 SSX2IPQ9Y2D8 614 aa11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 STK38LQ9Y2H1 464 aa11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 C15orf52Q6ZUT6 534 aaKnown RBP11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 GMCL1Q96IK5 515 aa11.54□□□□□ -0.56
LIMCH1-205ENST00000503057 PABPN1LA6NDY0 278 aaKnown RBP11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 MAGEA9P43362 315 aa11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 AP3M2P53677 418 aa11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 YWHAGP61981 247 aaKnown RBP eCLIP11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 NAA25Q14CX7 972 aa11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 TMEM35BQ8NCS4 154 aa11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 EXOC1LA0A1B0GW35 172 aa11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 ZRANB2O95218 330 aaKnown RBP eCLIP11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 SRGAP2CP0DJJ0 459 aa11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 CENPUQ71F23 418 aa11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 FAM163AQ96GL9 167 aaPredicted RBP11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 STRIP2Q9ULQ0 834 aa11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 MED24O75448 989 aa11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 TMEM253P0C7T8 217 aa11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 MYO1EQ12965 1108 aa11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 SPP2Q13103 211 aa11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 LLGL1Q15334 1064 aa11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 ZNF746Q6NUN9 644 aaPredicted RBP11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 TMEM270Q6UE05 265 aa11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 TEX2Q8IWB9 1127 aa11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 SLC9A2Q9UBY0 812 aa11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 MYO1CO00159 1063 aa11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 HSPA1LP34931 641 aa11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 MSH2P43246 934 aa11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 PMS1P54277 932 aaKnown RBP11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 MAP7D1Q3KQU3 841 aa11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 EAPPQ56P03 285 aaPredicted RBP11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 CCDC137Q6PK04 289 aaKnown RBP11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 AFAP1L2Q8N4X5 818 aa11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 PNKPQ96T60 521 aa11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 PLEKP08567 350 aaPredicted RBP11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 FGRP09769 529 aa11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 SLC1A1P43005 524 aa11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 MAPK6Q16659 721 aa11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 IP6K2Q9UHH9 426 aa11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 AMACRQ9UHK6 382 aa11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 FBXL5Q9UKA1 691 aa11.53□□□□□ -0.56
LIMCH1-205ENST00000503057 ACSL3O95573 720 aa11.52□□□□□ -0.56
LIMCH1-205ENST00000503057 MMEP08473 750 aa11.52□□□□□ -0.56
LIMCH1-205ENST00000503057 GNA15P30679 374 aa11.52□□□□□ -0.56
LIMCH1-205ENST00000503057 PCK1P35558 622 aa11.52□□□□□ -0.56
LIMCH1-205ENST00000503057 IRX5P78411 483 aaPredicted RBP11.52□□□□□ -0.56
LIMCH1-205ENST00000503057 RNASELQ05823 741 aaKnown RBP11.52□□□□□ -0.56
LIMCH1-205ENST00000503057 USP38Q8NB14 1042 aa11.52□□□□□ -0.56
LIMCH1-205ENST00000503057 CDKL2Q92772 493 aa11.52□□□□□ -0.56
LIMCH1-205ENST00000503057 FUT8Q9BYC5 575 aa11.52□□□□□ -0.56
LIMCH1-205ENST00000503057 C2orf40Q9H1Z8 148 aa11.52□□□□□ -0.56
LIMCH1-205ENST00000503057 JPH1Q9HDC5 661 aaPredicted RBP11.52□□□□□ -0.56
LIMCH1-205ENST00000503057 UVRAGQ9P2Y5 699 aa11.52□□□□□ -0.56
LIMCH1-205ENST00000503057 NOD1Q9Y239 953 aa11.52□□□□□ -0.56
LIMCH1-205ENST00000503057 CAPN9O14815 690 aa11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 PSMA2P25787 234 aa11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 MAGOHP61326 146 aaKnown RBP11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 DYNLT1P63172 113 aa11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 ZC2HC1CQ53FD0 456 aaPredicted RBP11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 SCARA5Q6ZMJ2 495 aa11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 PCGF5Q86SE9 256 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms