RNA–Protein interactions for RNA: ENST00000494323.5

PTCD3-219, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 540 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-219ENST00000494323 GRB10Q13322 594 aa6.32□□□□□ -1.4
PTCD3-219ENST00000494323 RRP1BQ14684 758 aaKnown RBP6.32□□□□□ -1.4
PTCD3-219ENST00000494323 CWF19L1Q69YN2 538 aaKnown RBP6.32□□□□□ -1.4
PTCD3-219ENST00000494323 C16orf86Q6ZW13 317 aa6.32□□□□□ -1.4
PTCD3-219ENST00000494323 ZNF227Q86WZ6 799 aa6.32□□□□□ -1.4
PTCD3-219ENST00000494323 DZIP1Q86YF9 867 aaKnown RBP6.32□□□□□ -1.4
PTCD3-219ENST00000494323 LRRN4CLQ8ND94 238 aa6.32□□□□□ -1.4
PTCD3-219ENST00000494323 DIS3LQ8TF46 1054 aaKnown RBP6.32□□□□□ -1.4
PTCD3-219ENST00000494323 ASB11Q8WXH4 323 aa6.32□□□□□ -1.4
PTCD3-219ENST00000494323 UBE2FQ969M7 185 aa6.32□□□□□ -1.4
PTCD3-219ENST00000494323 NEUROD6Q96NK8 337 aa6.32□□□□□ -1.4
PTCD3-219ENST00000494323 SPATA9Q9BWV2 254 aa6.32□□□□□ -1.4
PTCD3-219ENST00000494323 NOL6Q9H6R4 1146 aaKnown RBP6.32□□□□□ -1.4
PTCD3-219ENST00000494323 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.32□□□□□ -1.4
PTCD3-219ENST00000494323 CWC22Q9HCG8 908 aaKnown RBP6.32□□□□□ -1.4
PTCD3-219ENST00000494323 SEMA3GQ9NS98 782 aa6.32□□□□□ -1.4
PTCD3-219ENST00000494323 SMC4Q9NTJ3 1288 aa6.32□□□□□ -1.4
PTCD3-219ENST00000494323 ZSWIM5Q9P217 1185 aa6.32□□□□□ -1.4
PTCD3-219ENST00000494323 CGGBP1Q9UFW8 167 aaPredicted RBP6.32□□□□□ -1.4
PTCD3-219ENST00000494323 EMC9Q9Y3B6 208 aa6.32□□□□□ -1.4
PTCD3-219ENST00000494323 A0A0C4DFX4 3053 aa6.31□□□□□ -1.4
PTCD3-219ENST00000494323 ATRNL1Q5VV63 1379 aa6.31□□□□□ -1.4
PTCD3-219ENST00000494323 GPR75-ASB3A0A0A6YYF3 556 aa6.31□□□□□ -1.4
PTCD3-219ENST00000494323 A0A1B0GUL7 405 aa6.31□□□□□ -1.4
PTCD3-219ENST00000494323 RBAK-RBAKDNI3L0D1 243 aa6.31□□□□□ -1.4
PTCD3-219ENST00000494323 ITGAVP06756 1048 aa6.31□□□□□ -1.4
PTCD3-219ENST00000494323 FAM153BP0C7A2 387 aa6.31□□□□□ -1.4
PTCD3-219ENST00000494323 SYN1P17600 705 aa6.31□□□□□ -1.4
PTCD3-219ENST00000494323 TPP2P29144 1249 aaPredicted RBP6.31□□□□□ -1.4
PTCD3-219ENST00000494323 HMGCS2P54868 508 aa6.31□□□□□ -1.4
PTCD3-219ENST00000494323 LONRF2Q1L5Z9 754 aa6.31□□□□□ -1.4
PTCD3-219ENST00000494323 GAB4Q2WGN9 574 aa6.31□□□□□ -1.4
PTCD3-219ENST00000494323 SPTY2D1Q68D10 685 aaPredicted RBP6.31□□□□□ -1.4
PTCD3-219ENST00000494323 SPRED2Q7Z698 418 aa6.31□□□□□ -1.4
PTCD3-219ENST00000494323 WFDC3Q8IUB2 231 aa6.31□□□□□ -1.4
PTCD3-219ENST00000494323 ZGPATQ8N5A5 531 aaKnown RBP6.31□□□□□ -1.4
PTCD3-219ENST00000494323 ZNF384Q8TF68 577 aa6.31□□□□□ -1.4
PTCD3-219ENST00000494323 FEZ1Q99689 392 aa6.31□□□□□ -1.4
PTCD3-219ENST00000494323 GJD2Q9UKL4 321 aa6.31□□□□□ -1.4
PTCD3-219ENST00000494323 ZMYND8Q9ULU4 1186 aaPredicted RBP6.31□□□□□ -1.4
PTCD3-219ENST00000494323 AGTPBP1Q9UPW5 1226 aa6.31□□□□□ -1.4
PTCD3-219ENST00000494323 SLC45A1Q9Y2W3 748 aa6.31□□□□□ -1.4
PTCD3-219ENST00000494323 GAKO14976 1311 aa6.3□□□□□ -1.4
PTCD3-219ENST00000494323 A0A1W2PQU0 124 aa6.3□□□□□ -1.4
PTCD3-219ENST00000494323 MEIS1O00470 390 aa6.3□□□□□ -1.4
PTCD3-219ENST00000494323 SRGAP3O43295 1099 aa6.3□□□□□ -1.4
PTCD3-219ENST00000494323 CLSTN1O94985 981 aa6.3□□□□□ -1.4
PTCD3-219ENST00000494323 CD8BP10966 210 aa6.3□□□□□ -1.4
PTCD3-219ENST00000494323 JUNBP17275 347 aaPredicted RBP6.3□□□□□ -1.4
PTCD3-219ENST00000494323 CYP2B6P20813 491 aa6.3□□□□□ -1.4
PTCD3-219ENST00000494323 RHBDL3P58872 404 aa6.3□□□□□ -1.4
PTCD3-219ENST00000494323 JAG1P78504 1218 aa6.3□□□□□ -1.4
PTCD3-219ENST00000494323 POU4F1Q01851 419 aa6.3□□□□□ -1.4
PTCD3-219ENST00000494323 HSP90AA2PQ14568 343 aaPredicted RBP6.3□□□□□ -1.4
PTCD3-219ENST00000494323 PPP2R5DQ14738 602 aa6.3□□□□□ -1.4
PTCD3-219ENST00000494323 PTPROQ16827 1216 aa6.3□□□□□ -1.4
PTCD3-219ENST00000494323 FAM110CQ1W6H9 321 aa6.3□□□□□ -1.4
PTCD3-219ENST00000494323 ALDH1L2Q3SY69 923 aa6.3□□□□□ -1.4
PTCD3-219ENST00000494323 TMEM67Q5HYA8 995 aa6.3□□□□□ -1.4
PTCD3-219ENST00000494323 ZC3H12BQ5HYM0 836 aaKnown RBP6.3□□□□□ -1.4
PTCD3-219ENST00000494323 GORABQ5T7V8 394 aa6.3□□□□□ -1.4
PTCD3-219ENST00000494323 NECAB2Q7Z6G3 386 aa6.3□□□□□ -1.4
PTCD3-219ENST00000494323 TRIM59Q8IWR1 403 aa6.3□□□□□ -1.4
PTCD3-219ENST00000494323 ASIC4Q96FT7 647 aa6.3□□□□□ -1.4
PTCD3-219ENST00000494323 TCTN2Q96GX1 697 aa6.3□□□□□ -1.4
PTCD3-219ENST00000494323 MRGPRX3Q96LB0 322 aa6.3□□□□□ -1.4
PTCD3-219ENST00000494323 P2RX7Q99572 595 aaKnown RBP6.3□□□□□ -1.4
PTCD3-219ENST00000494323 MEIS3Q99687 375 aa6.3□□□□□ -1.4
PTCD3-219ENST00000494323 BRINP2Q9C0B6 783 aa6.3□□□□□ -1.4
PTCD3-219ENST00000494323 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.3□□□□□ -1.4
PTCD3-219ENST00000494323 ARHGEF4Q9NR80 690 aa6.3□□□□□ -1.4
PTCD3-219ENST00000494323 RAI14Q9P0K7 980 aa6.3□□□□□ -1.4
PTCD3-219ENST00000494323 HMG20BQ9P0W2 317 aa6.3□□□□□ -1.4
PTCD3-219ENST00000494323 DUSP13Q9UII6 198 aa6.3□□□□□ -1.4
PTCD3-219ENST00000494323 CUL9Q8IWT3 2517 aa6.3□□□□□ -1.4
PTCD3-219ENST00000494323 MROH7-TTC4A0A0A0MT08 1334 aa6.29□□□□□ -1.4
PTCD3-219ENST00000494323 RPTORQ8N122 1335 aa6.29□□□□□ -1.4
PTCD3-219ENST00000494323 PTPRFP10586 1907 aa6.29□□□□□ -1.4
PTCD3-219ENST00000494323 H0Y8X5 98 aa6.29□□□□□ -1.4
PTCD3-219ENST00000494323 CAPNS1P04632 268 aa6.29□□□□□ -1.4
PTCD3-219ENST00000494323 LDHCP07864 332 aa6.29□□□□□ -1.4
PTCD3-219ENST00000494323 ENDOUP21128 410 aaKnown RBP6.29□□□□□ -1.4
PTCD3-219ENST00000494323 FUT4P22083 530 aa6.29□□□□□ -1.4
PTCD3-219ENST00000494323 BMP8BP34820 402 aa6.29□□□□□ -1.4
PTCD3-219ENST00000494323 CTSKP43235 329 aa6.29□□□□□ -1.4
PTCD3-219ENST00000494323 NOP2P46087 812 aaKnown RBP6.29□□□□□ -1.4
PTCD3-219ENST00000494323 GCLCP48506 637 aaPredicted RBP6.29□□□□□ -1.4
PTCD3-219ENST00000494323 GYS2P54840 703 aa6.29□□□□□ -1.4
PTCD3-219ENST00000494323 PCBP3P57721 371 aaKnown RBP6.29□□□□□ -1.4
PTCD3-219ENST00000494323 AMPD2Q01433 879 aa6.29□□□□□ -1.4
PTCD3-219ENST00000494323 SHROOM1Q2M3G4 852 aaPredicted RBP6.29□□□□□ -1.4
PTCD3-219ENST00000494323 ZNF792Q3KQV3 632 aa6.29□□□□□ -1.4
PTCD3-219ENST00000494323 FOXB2Q5VYV0 432 aa6.29□□□□□ -1.4
PTCD3-219ENST00000494323 RNF111Q6ZNA4 994 aa6.29□□□□□ -1.4
PTCD3-219ENST00000494323 Q7L0L9 218 aa6.29□□□□□ -1.4
PTCD3-219ENST00000494323 DEFB123Q8N688 67 aa6.29□□□□□ -1.4
PTCD3-219ENST00000494323 SPATA5Q8NB90 893 aa6.29□□□□□ -1.4
PTCD3-219ENST00000494323 ZSWIM2Q8NEG5 633 aa6.29□□□□□ -1.4
PTCD3-219ENST00000494323 SH3RF3Q8TEJ3 882 aaPredicted RBP6.29□□□□□ -1.4
PTCD3-219ENST00000494323 NSUN4Q96CB9 384 aaKnown RBP6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms