RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 ZNF18P17022 549 aa17.49■□□□□ 0.39
CCDC88B-209ENST00000494080 SWSAP1Q6NVH7 229 aa17.49■□□□□ 0.39
CCDC88B-209ENST00000494080 RUBCNQ92622 972 aa17.49■□□□□ 0.39
CCDC88B-209ENST00000494080 ETNK1Q9HBU6 452 aa17.49■□□□□ 0.39
CCDC88B-209ENST00000494080 SALL1Q9NSC2 1324 aa17.49■□□□□ 0.39
CCDC88B-209ENST00000494080 GOLGA8SH3BPF8 625 aa17.48■□□□□ 0.39
CCDC88B-209ENST00000494080 SRGNP10124 158 aa17.48■□□□□ 0.39
CCDC88B-209ENST00000494080 PDCD7Q8N8D1 485 aaKnown RBP17.48■□□□□ 0.39
CCDC88B-209ENST00000494080 NSUN6Q8TEA1 469 aaKnown RBP17.48■□□□□ 0.39
CCDC88B-209ENST00000494080 ZNF668Q96K58 619 aaPredicted RBP17.48■□□□□ 0.39
CCDC88B-209ENST00000494080 ECT2Q9H8V3 914 aa17.48■□□□□ 0.39
CCDC88B-209ENST00000494080 FBXO28Q9NVF7 368 aa17.48■□□□□ 0.39
CCDC88B-209ENST00000494080 A0A0U1RQJ8 604 aa17.48■□□□□ 0.39
CCDC88B-209ENST00000494080 ZNF233A6NK53 670 aa17.48■□□□□ 0.39
CCDC88B-209ENST00000494080 MTMR2Q13614 643 aa17.48■□□□□ 0.39
CCDC88B-209ENST00000494080 BATF3Q9NR55 127 aa17.48■□□□□ 0.39
CCDC88B-209ENST00000494080 DENND3A2RUS2 1198 aa17.48■□□□□ 0.39
CCDC88B-209ENST00000494080 TBX2Q13207 712 aaPredicted RBP17.48■□□□□ 0.39
CCDC88B-209ENST00000494080 REEP2Q9BRK0 252 aa17.48■□□□□ 0.39
CCDC88B-209ENST00000494080 RPAP3Q9H6T3 665 aaPredicted RBP17.48■□□□□ 0.39
CCDC88B-209ENST00000494080 SDCCAG8Q86SQ7 713 aaPredicted RBP17.48■□□□□ 0.39
CCDC88B-209ENST00000494080 PITPNM3Q9BZ71 974 aa17.48■□□□□ 0.39
CCDC88B-209ENST00000494080 GRID2IPA4D2P6 1211 aa17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 SART1O43290 800 aaKnown RBP17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 KLK7P49862 253 aa17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 JAK3P52333 1124 aa17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 ZNF394Q53GI3 561 aa17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 CFAP157Q5JU67 520 aa17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 ZNF746Q6NUN9 644 aaPredicted RBP17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 RSBN1LQ6PCB5 846 aaPredicted RBP17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 DDX42Q86XP3 938 aaKnown RBP eCLIP17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 THNSL1Q8IYQ7 743 aa17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 MON2Q7Z3U7 1717 aa17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 I3L4J1 428 aa17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 EYA4O95677 639 aa17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 PPP2R5DQ14738 602 aa17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 GRIK5Q16478 980 aa17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 C10orf76Q5T2E6 689 aa17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 BSPRYQ5W0U4 402 aa17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 OSBPL1AQ9BXW6 950 aa17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 VCX3AQ9NNX9 186 aa17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 PIK3C2AO00443 1686 aa17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 TMED2Q15363 201 aa17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 ACER1Q8TDN7 264 aa17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 NSMCE1Q8WV22 266 aa17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 INTUQ9ULD6 942 aa17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 STAM2O75886 525 aa17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 MSH2P43246 934 aa17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 IREB2P48200 963 aaKnown RBP17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 KRT76Q01546 638 aa17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 Q3C1V9 767 aa17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 NAIF1Q69YI7 327 aaPredicted RBP17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 SCARA5Q6ZMJ2 495 aa17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 MICALL2Q8IY33 904 aa17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 MSTO1Q9BUK6 570 aa17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 HOXC10Q9NYD6 342 aa17.47■□□□□ 0.39
CCDC88B-209ENST00000494080 RIC1Q4ADV7 1423 aa17.46■□□□□ 0.39
CCDC88B-209ENST00000494080 POLR2BP30876 1174 aaKnown RBP17.46■□□□□ 0.39
CCDC88B-209ENST00000494080 ECE1P42892 770 aa17.46■□□□□ 0.39
CCDC88B-209ENST00000494080 DRAP1Q14919 205 aaPredicted RBP17.46■□□□□ 0.39
CCDC88B-209ENST00000494080 CCDC110Q8TBZ0 833 aa17.46■□□□□ 0.39
CCDC88B-209ENST00000494080 FAM151AQ8WW52 585 aa17.46■□□□□ 0.39
CCDC88B-209ENST00000494080 FAM213AQ9BRX8 229 aa17.46■□□□□ 0.39
CCDC88B-209ENST00000494080 VCPKMTQ9H867 229 aa17.46■□□□□ 0.39
CCDC88B-209ENST00000494080 DDTLA6NHG4 134 aaPredicted RBP17.46■□□□□ 0.39
CCDC88B-209ENST00000494080 CNGA1P29973 690 aa17.46■□□□□ 0.39
CCDC88B-209ENST00000494080 PMS2P54278 862 aa17.46■□□□□ 0.39
CCDC88B-209ENST00000494080 EVX2Q03828 476 aa17.46■□□□□ 0.39
CCDC88B-209ENST00000494080 TFDP1Q14186 410 aa17.46■□□□□ 0.39
CCDC88B-209ENST00000494080 STXBP2Q15833 593 aa17.46■□□□□ 0.39
CCDC88B-209ENST00000494080 PAPD7Q5XG87 772 aaKnown RBP17.46■□□□□ 0.39
CCDC88B-209ENST00000494080 KDM7AQ6ZMT4 941 aa17.46■□□□□ 0.39
CCDC88B-209ENST00000494080 RSAD2Q8WXG1 361 aa17.46■□□□□ 0.39
CCDC88B-209ENST00000494080 ESYT2A0FGR8 921 aa17.46■□□□□ 0.39
CCDC88B-209ENST00000494080 ECEL1O95672 775 aa17.46■□□□□ 0.39
CCDC88B-209ENST00000494080 VEGFAP15692 232 aaPredicted RBP17.46■□□□□ 0.39
CCDC88B-209ENST00000494080 CCNA1P78396 465 aa17.46■□□□□ 0.39
CCDC88B-209ENST00000494080 ALCAMQ13740 583 aa17.46■□□□□ 0.39
CCDC88B-209ENST00000494080 CASC4Q6P4E1 433 aa17.46■□□□□ 0.39
CCDC88B-209ENST00000494080 FBXO41Q8TF61 875 aa17.46■□□□□ 0.39
CCDC88B-209ENST00000494080 NOD2Q9HC29 1040 aa17.46■□□□□ 0.39
CCDC88B-209ENST00000494080 CNOT7Q9UIV1 285 aaKnown RBP17.46■□□□□ 0.39
CCDC88B-209ENST00000494080 NOC2LQ9Y3T9 749 aaKnown RBP17.46■□□□□ 0.39
CCDC88B-209ENST00000494080 RNF8O76064 485 aa17.45■□□□□ 0.38
CCDC88B-209ENST00000494080 SNX16P57768 344 aa17.45■□□□□ 0.38
CCDC88B-209ENST00000494080 EPHA7Q15375 998 aa17.45■□□□□ 0.38
CCDC88B-209ENST00000494080 TRIP13Q15645 432 aaPredicted RBP17.45■□□□□ 0.38
CCDC88B-209ENST00000494080 ZC3H18Q86VM9 953 aaKnown RBP17.45■□□□□ 0.38
CCDC88B-209ENST00000494080 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.45■□□□□ 0.388e-8■□□□□ 8.6
CCDC88B-209ENST00000494080 HESX1Q9UBX0 185 aa17.45■□□□□ 0.38
CCDC88B-209ENST00000494080 M0QZ92 97 aa17.45■□□□□ 0.38
CCDC88B-209ENST00000494080 KIF3CO14782 793 aa17.45■□□□□ 0.38
CCDC88B-209ENST00000494080 RAD51CO43502 376 aa17.45■□□□□ 0.38
CCDC88B-209ENST00000494080 CRYMQ14894 314 aa17.45■□□□□ 0.38
CCDC88B-209ENST00000494080 HADHQ16836 314 aaKnown RBP17.45■□□□□ 0.38
CCDC88B-209ENST00000494080 SH2D4BQ5SQS7 431 aa17.45■□□□□ 0.38
CCDC88B-209ENST00000494080 CYFIP1Q7L576 1253 aa17.45■□□□□ 0.38
CCDC88B-209ENST00000494080 GLYCTKQ8IVS8 523 aa17.45■□□□□ 0.38
CCDC88B-209ENST00000494080 TTLL3Q9Y4R7 772 aa17.45■□□□□ 0.38
CCDC88B-209ENST00000494080 PLEKP08567 350 aaPredicted RBP17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms