RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 EFCAB12Q6NXP0 572 aa13.91□□□□□ -0.18
VPS52-220ENST00000493674 KSR1Q8IVT5 923 aa13.91□□□□□ -0.18
VPS52-220ENST00000493674 LRRC71Q8N4P6 559 aa13.91□□□□□ -0.18
VPS52-220ENST00000493674 RETREG2Q8NC44 543 aa13.91□□□□□ -0.18
VPS52-220ENST00000493674 GOLGA5Q8TBA6 731 aa13.91□□□□□ -0.18
VPS52-220ENST00000493674 ZNF333Q96JL9 665 aa13.91□□□□□ -0.18
VPS52-220ENST00000493674 KIFC3Q9BVG8 833 aa13.91□□□□□ -0.18
VPS52-220ENST00000493674 NFKBIZQ9BYH8 718 aa13.91□□□□□ -0.18
VPS52-220ENST00000493674 GBP3Q9H0R5 595 aa13.91□□□□□ -0.18
VPS52-220ENST00000493674 IKZF4Q9H2S9 585 aa13.91□□□□□ -0.18
VPS52-220ENST00000493674 TMEM134Q9H6X4 195 aa13.91□□□□□ -0.18
VPS52-220ENST00000493674 INTS13Q9NVM9 706 aa13.91□□□□□ -0.18
VPS52-220ENST00000493674 TBX20Q9UMR3 447 aa13.91□□□□□ -0.18
VPS52-220ENST00000493674 CCDC169A6NNP5 214 aa13.9□□□□□ -0.18
VPS52-220ENST00000493674 ZEB2O60315 1214 aa13.9□□□□□ -0.18
VPS52-220ENST00000493674 FGFR1OPO95684 399 aaKnown RBP13.9□□□□□ -0.18
VPS52-220ENST00000493674 NR3C1P04150 777 aa13.9□□□□□ -0.18
VPS52-220ENST00000493674 CLCN3P51790 818 aa13.9□□□□□ -0.18
VPS52-220ENST00000493674 MCCD1P59942 119 aaPredicted RBP13.9□□□□□ -0.18
VPS52-220ENST00000493674 CCDC173Q0VFZ6 552 aa13.9□□□□□ -0.18
VPS52-220ENST00000493674 KRT31Q15323 416 aa13.9□□□□□ -0.18
VPS52-220ENST00000493674 TPD52L1Q16890 204 aaPredicted RBP13.9□□□□□ -0.18
VPS52-220ENST00000493674 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.9□□□□□ -0.18
VPS52-220ENST00000493674 FILIP1Q7Z7B0 1213 aa13.9□□□□□ -0.18
VPS52-220ENST00000493674 SESTD1Q86VW0 696 aa13.9□□□□□ -0.18
VPS52-220ENST00000493674 FAM114A1Q8IWE2 563 aa13.9□□□□□ -0.18
VPS52-220ENST00000493674 ZBTB10Q96DT7 871 aa13.9□□□□□ -0.18
VPS52-220ENST00000493674 CNOT6LQ96LI5 555 aaKnown RBP13.9□□□□□ -0.18
VPS52-220ENST00000493674 XPO4Q9C0E2 1151 aaKnown RBP13.9□□□□□ -0.18
VPS52-220ENST00000493674 HMX1Q9NP08 348 aaPredicted RBP13.9□□□□□ -0.18
VPS52-220ENST00000493674 AGPAT3Q9NRZ7 376 aa13.9□□□□□ -0.18
VPS52-220ENST00000493674 SETD4Q9NVD3 440 aa13.9□□□□□ -0.18
VPS52-220ENST00000493674 IFNKQ9P0W0 207 aa13.9□□□□□ -0.18
VPS52-220ENST00000493674 SUCLA2Q9P2R7 463 aaPredicted RBP13.9□□□□□ -0.18
VPS52-220ENST00000493674 DNAH12Q6ZR08 3092 aa13.89□□□□□ -0.19
VPS52-220ENST00000493674 SMIM35A0A1B0GVV1 85 aa13.89□□□□□ -0.19
VPS52-220ENST00000493674 EDN1P05305 212 aa13.89□□□□□ -0.19
VPS52-220ENST00000493674 NR2F2P24468 414 aa13.89□□□□□ -0.19
VPS52-220ENST00000493674 DNM2P50570 870 aa13.89□□□□□ -0.19
VPS52-220ENST00000493674 EFNA5P52803 228 aa13.89□□□□□ -0.19
VPS52-220ENST00000493674 PTENP60484 403 aa13.89□□□□□ -0.19
VPS52-220ENST00000493674 IGBP1P78318 339 aa13.89□□□□□ -0.19
VPS52-220ENST00000493674 HSP90AA4PQ58FG1 418 aa13.89□□□□□ -0.19
VPS52-220ENST00000493674 SLC39A4Q6P5W5 647 aa13.89□□□□□ -0.19
VPS52-220ENST00000493674 HS2ST1Q7LGA3 356 aa13.89□□□□□ -0.19
VPS52-220ENST00000493674 KIAA0319LQ8IZA0 1049 aa13.89□□□□□ -0.19
VPS52-220ENST00000493674 PCSK9Q8NBP7 692 aaKnown RBP13.89□□□□□ -0.19
VPS52-220ENST00000493674 NAP1L5Q96NT1 182 aaPredicted RBP13.89□□□□□ -0.19
VPS52-220ENST00000493674 CTAGE1Q96RT6 745 aa13.89□□□□□ -0.19
VPS52-220ENST00000493674 TSEN34Q9BSV6 310 aaKnown RBP13.89□□□□□ -0.19
VPS52-220ENST00000493674 TRIM5Q9C035 493 aa13.89□□□□□ -0.19
VPS52-220ENST00000493674 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.89□□□□□ -0.19
VPS52-220ENST00000493674 SUGCTQ9HAC7 445 aa13.89□□□□□ -0.19
VPS52-220ENST00000493674 PAK6Q9NQU5 681 aaPredicted RBP13.89□□□□□ -0.19
VPS52-220ENST00000493674 EXOC7Q9UPT5 735 aa13.89□□□□□ -0.19
VPS52-220ENST00000493674 LRRIQ4A6NIV6 560 aa13.88□□□□□ -0.19
VPS52-220ENST00000493674 CETN3O15182 167 aa13.88□□□□□ -0.19
VPS52-220ENST00000493674 SLC16A3O15427 465 aaKnown RBP13.88□□□□□ -0.19
VPS52-220ENST00000493674 GNA14O95837 355 aa13.88□□□□□ -0.19
VPS52-220ENST00000493674 ASGR1P07306 291 aa13.88□□□□□ -0.19
VPS52-220ENST00000493674 GJB1P08034 283 aa13.88□□□□□ -0.19
VPS52-220ENST00000493674 CAPN2P17655 700 aa13.88□□□□□ -0.19
VPS52-220ENST00000493674 RPL13P26373 211 aaKnown RBP13.88□□□□□ -0.19
VPS52-220ENST00000493674 COPB1P53618 953 aaKnown RBP13.88□□□□□ -0.19
VPS52-220ENST00000493674 TFDP1Q14186 410 aa13.88□□□□□ -0.19
VPS52-220ENST00000493674 NR1I3Q14994 352 aa13.88□□□□□ -0.19
VPS52-220ENST00000493674 KCNA10Q16322 511 aa13.88□□□□□ -0.19
VPS52-220ENST00000493674 NFRKBQ6P4R8 1299 aa13.88□□□□□ -0.19
VPS52-220ENST00000493674 CXCL17Q6UXB2 119 aa13.88□□□□□ -0.19
VPS52-220ENST00000493674 DEPTORQ8TB45 409 aa13.88□□□□□ -0.19
VPS52-220ENST00000493674 ANP32BQ92688 251 aaKnown RBP13.88□□□□□ -0.19
VPS52-220ENST00000493674 BORCS6Q96GS4 357 aa13.88□□□□□ -0.19
VPS52-220ENST00000493674 MKNK1Q9BUB5 465 aa13.88□□□□□ -0.19
VPS52-220ENST00000493674 C2orf40Q9H1Z8 148 aa13.88□□□□□ -0.19
VPS52-220ENST00000493674 IFT122Q9HBG6 1241 aa13.88□□□□□ -0.19
VPS52-220ENST00000493674 RTN4Q9NQC3 1192 aaKnown RBP13.88□□□□□ -0.19
VPS52-220ENST00000493674 HDAC6Q9UBN7 1215 aa13.88□□□□□ -0.19
VPS52-220ENST00000493674 GTF2IRD1Q9UHL9 959 aa13.88□□□□□ -0.19
VPS52-220ENST00000493674 STYXL1Q9Y6J8 313 aa13.88□□□□□ -0.19
VPS52-220ENST00000493674 GRIN2DO15399 1336 aa13.88□□□□□ -0.19
VPS52-220ENST00000493674 TISP43B9A030 160 aa13.87□□□□□ -0.19
VPS52-220ENST00000493674 ANKRD63C9JTQ0 380 aa13.87□□□□□ -0.19
VPS52-220ENST00000493674 MAPK13O15264 365 aa13.87□□□□□ -0.19
VPS52-220ENST00000493674 CBFA2T2O43439 604 aa13.87□□□□□ -0.19
VPS52-220ENST00000493674 CABYRO75952 493 aa13.87□□□□□ -0.19
VPS52-220ENST00000493674 SERPINC1P01008 464 aa13.87□□□□□ -0.19
VPS52-220ENST00000493674 CDK11BP21127 795 aaKnown RBP13.87□□□□□ -0.19
VPS52-220ENST00000493674 TMOD1P28289 359 aa13.87□□□□□ -0.19
VPS52-220ENST00000493674 ADSSP30520 456 aa13.87□□□□□ -0.19
VPS52-220ENST00000493674 PBX1P40424 430 aa13.87□□□□□ -0.19
VPS52-220ENST00000493674 UBASH3AP57075 661 aa13.87□□□□□ -0.19
VPS52-220ENST00000493674 MBTD1Q05BQ5 628 aa13.87□□□□□ -0.19
VPS52-220ENST00000493674 ADAM9Q13443 819 aa13.87□□□□□ -0.19
VPS52-220ENST00000493674 FAM187BQ17R55 369 aa13.87□□□□□ -0.19
VPS52-220ENST00000493674 NBPF20Q3BBV1 942 aa13.87□□□□□ -0.19
VPS52-220ENST00000493674 MIIPQ5JXC2 388 aa13.87□□□□□ -0.19
VPS52-220ENST00000493674 RNF180Q86T96 592 aa13.87□□□□□ -0.19
VPS52-220ENST00000493674 ZNF410Q86VK4 478 aa13.87□□□□□ -0.19
VPS52-220ENST00000493674 RHPN2Q8IUC4 686 aa13.87□□□□□ -0.19
VPS52-220ENST00000493674 TRIM59Q8IWR1 403 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms