RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 PUM3Q15397 648 aaKnown RBP5.62□□□□□ -1.51
VPS13A-212ENST00000493341 JAKMIP3Q5VZ66 844 aa5.62□□□□□ -1.51
VPS13A-212ENST00000493341 GGT6Q6P531 493 aa5.62□□□□□ -1.51
VPS13A-212ENST00000493341 KANSL1Q7Z3B3 1105 aa5.62□□□□□ -1.51
VPS13A-212ENST00000493341 DCP2Q8IU60 420 aaKnown RBP5.62□□□□□ -1.51
VPS13A-212ENST00000493341 STK11IPQ8N1F8 1099 aa5.62□□□□□ -1.51
VPS13A-212ENST00000493341 CCDC33Q8N5R6 958 aa5.62□□□□□ -1.51
VPS13A-212ENST00000493341 SEC14L1Q92503 715 aa5.62□□□□□ -1.51
VPS13A-212ENST00000493341 TP53INP1Q96A56 240 aa5.62□□□□□ -1.51
VPS13A-212ENST00000493341 PAGR1Q9BTK6 254 aa5.62□□□□□ -1.51
VPS13A-212ENST00000493341 ADAMTS10Q9H324 1103 aa5.62□□□□□ -1.51
VPS13A-212ENST00000493341 ARHGAP28Q9P2N2 729 aa5.62□□□□□ -1.51
VPS13A-212ENST00000493341 PCDHB1Q9Y5F3 818 aa5.62□□□□□ -1.51
VPS13A-212ENST00000493341 SCINQ9Y6U3 715 aa5.62□□□□□ -1.51
VPS13A-212ENST00000493341 A0A087WV62 115 aa5.62□□□□□ -1.51
VPS13A-212ENST00000493341 PRRT4C9JH25 899 aa5.62□□□□□ -1.51
VPS13A-212ENST00000493341 CYP26A1O43174 497 aa5.62□□□□□ -1.51
VPS13A-212ENST00000493341 AOAHP28039 575 aa5.62□□□□□ -1.51
VPS13A-212ENST00000493341 MC4RP32245 332 aa5.62□□□□□ -1.51
VPS13A-212ENST00000493341 KIR2DL1P43626 348 aaPredicted RBP5.62□□□□□ -1.51
VPS13A-212ENST00000493341 KIR2DL2P43627 348 aaPredicted RBP5.62□□□□□ -1.51
VPS13A-212ENST00000493341 NFIAQ12857 509 aa5.62□□□□□ -1.51
VPS13A-212ENST00000493341 TLDC1Q6P9B6 456 aa5.62□□□□□ -1.51
VPS13A-212ENST00000493341 RHOT1Q8IXI2 618 aa5.62□□□□□ -1.51
VPS13A-212ENST00000493341 DRC7Q8IY82 874 aa5.62□□□□□ -1.51
VPS13A-212ENST00000493341 GLB1L3Q8NCI6 653 aaPredicted RBP5.62□□□□□ -1.51
VPS13A-212ENST00000493341 RSAD2Q8WXG1 361 aa5.62□□□□□ -1.51
VPS13A-212ENST00000493341 RPGRQ92834 1020 aaKnown RBP5.62□□□□□ -1.51
VPS13A-212ENST00000493341 BTBD1Q9H0C5 482 aa5.62□□□□□ -1.51
VPS13A-212ENST00000493341 KIAA1586Q9HCI6 787 aa5.62□□□□□ -1.51
VPS13A-212ENST00000493341 AGO4Q9HCK5 861 aaKnown RBP5.62□□□□□ -1.51
VPS13A-212ENST00000493341 STARD7Q9NQZ5 370 aa5.62□□□□□ -1.51
VPS13A-212ENST00000493341 BTBD7Q9P203 1132 aa5.62□□□□□ -1.51
VPS13A-212ENST00000493341 LRRC14BA6NHZ5 514 aa5.61□□□□□ -1.51
VPS13A-212ENST00000493341 H3BUI4 141 aa5.61□□□□□ -1.51
VPS13A-212ENST00000493341 NFIBO00712 420 aa5.61□□□□□ -1.51
VPS13A-212ENST00000493341 WFS1O76024 890 aa5.61□□□□□ -1.51
VPS13A-212ENST00000493341 RPLP2P05387 115 aaKnown RBP5.61□□□□□ -1.51
VPS13A-212ENST00000493341 MCAMP43121 646 aa5.61□□□□□ -1.51
VPS13A-212ENST00000493341 GEMIN4P57678 1058 aaKnown RBP5.61□□□□□ -1.51
VPS13A-212ENST00000493341 DSC2Q02487 901 aa5.61□□□□□ -1.51
VPS13A-212ENST00000493341 ICA1Q05084 483 aa5.61□□□□□ -1.51
VPS13A-212ENST00000493341 NOMO1Q15155 1222 aa5.61□□□□□ -1.51
VPS13A-212ENST00000493341 NR0B2Q15466 257 aa5.61□□□□□ -1.51
VPS13A-212ENST00000493341 AOC3Q16853 763 aa5.61□□□□□ -1.51
VPS13A-212ENST00000493341 THEMIS2Q5TEJ8 643 aa5.61□□□□□ -1.51
VPS13A-212ENST00000493341 TTC7BQ86TV6 843 aa5.61□□□□□ -1.51
VPS13A-212ENST00000493341 SH2D3CQ8N5H7 860 aa5.61□□□□□ -1.51
VPS13A-212ENST00000493341 SHKBP1Q8TBC3 707 aa5.61□□□□□ -1.51
VPS13A-212ENST00000493341 ARL8AQ96BM9 186 aa5.61□□□□□ -1.51
VPS13A-212ENST00000493341 SLC35A4Q96G79 324 aa5.61□□□□□ -1.51
VPS13A-212ENST00000493341 HRASLS5Q96KN8 279 aa5.61□□□□□ -1.51
VPS13A-212ENST00000493341 FOXB1Q99853 325 aa5.61□□□□□ -1.51
VPS13A-212ENST00000493341 PLCD4Q9BRC7 762 aa5.61□□□□□ -1.51
VPS13A-212ENST00000493341 SSBP4Q9BWG4 385 aaPredicted RBP5.61□□□□□ -1.51
VPS13A-212ENST00000493341 ATP6V0A4Q9HBG4 840 aa5.61□□□□□ -1.51
VPS13A-212ENST00000493341 RRN3Q9NYV6 651 aa5.61□□□□□ -1.51
VPS13A-212ENST00000493341 PCDHB6Q9Y5E3 794 aa5.61□□□□□ -1.51
VPS13A-212ENST00000493341 ZGLP1P0C6A0 271 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 GLI4P10075 376 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 HSD3B1P14060 373 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 FAHP16930 419 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 ZNF543Q08ER8 600 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 DBPQ10586 325 aaPredicted RBP5.6□□□□□ -1.51
VPS13A-212ENST00000493341 PRR16Q569H4 304 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 RALGPS1Q5JS13 557 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 CIAPIN1Q6FI81 312 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 PPP4R3AQ6IN85 833 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 HIBCHQ6NVY1 386 aaPredicted RBP5.6□□□□□ -1.51
VPS13A-212ENST00000493341 GALNT18Q6P9A2 607 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 BTNL9Q6UXG8 535 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 ZNF527Q8NB42 609 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 PPHLN1Q8NEY8 458 aaKnown RBP5.6□□□□□ -1.51
VPS13A-212ENST00000493341 OR2I1PQ8NGU4 316 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 SKA1Q96BD8 255 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 C7orf25Q9BPX7 421 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 ISCA1Q9BUE6 129 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 GREM2Q9H772 168 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 ZNF287Q9HBT7 754 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 OGDHLQ9ULD0 1010 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 DENND2AQ9ULE3 1009 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 SYNPO2Q9UMS6 1093 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 GPR52Q9Y2T5 361 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 CFAP20Q9Y6A4 193 aaKnown RBP5.6□□□□□ -1.51
VPS13A-212ENST00000493341 A0A1W2PPL8 197 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 DDX3XO00571 662 aaKnown RBP eCLIP5.6□□□□□ -1.51
VPS13A-212ENST00000493341 HSP90AA1P07900 732 aaKnown RBP5.6□□□□□ -1.51
VPS13A-212ENST00000493341 FAM163BP0C2L3 166 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 KITP10721 976 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 TECP42680 631 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 FGL2Q14314 439 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 STARD3Q14849 445 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 LCE2AQ5TA79 106 aaPredicted RBP5.6□□□□□ -1.51
VPS13A-212ENST00000493341 PGBD2Q6P3X8 592 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 PRR23CQ6ZRP0 262 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 GAREM2Q75VX8 874 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 SYTL1Q8IYJ3 562 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 CDYL2Q8N8U2 506 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 CALML6Q8TD86 181 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 RAB24Q969Q5 203 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms