RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 TMEM150BA6NC51 233 aa10.6□□□□□ -0.71
USP54-214ENST00000492357 K7ERI5 159 aa10.6□□□□□ -0.71
USP54-214ENST00000492357 LDHAP00338 332 aaKnown RBP10.6□□□□□ -0.71
USP54-214ENST00000492357 MYL3P08590 195 aa10.6□□□□□ -0.71
USP54-214ENST00000492357 MARK3P27448 753 aa10.6□□□□□ -0.71
USP54-214ENST00000492357 CCND3P30281 292 aaPredicted RBP10.6□□□□□ -0.71
USP54-214ENST00000492357 NMT1P30419 496 aaKnown RBP10.6□□□□□ -0.71
USP54-214ENST00000492357 PTENP60484 403 aa10.6□□□□□ -0.71
USP54-214ENST00000492357 CCDC173Q0VFZ6 552 aa10.6□□□□□ -0.71
USP54-214ENST00000492357 LAMTOR4Q0VGL1 99 aa10.6□□□□□ -0.71
USP54-214ENST00000492357 KYAT1Q16773 422 aa10.6□□□□□ -0.71
USP54-214ENST00000492357 SLC9C1Q4G0N8 1177 aa10.6□□□□□ -0.71
USP54-214ENST00000492357 FILIP1LQ4L180 1135 aa10.6□□□□□ -0.71
USP54-214ENST00000492357 MARCH8Q5T0T0 291 aa10.6□□□□□ -0.71
USP54-214ENST00000492357 LHX8Q68G74 356 aa10.6□□□□□ -0.71
USP54-214ENST00000492357 ANKRD40Q6AI12 368 aa10.6□□□□□ -0.71
USP54-214ENST00000492357 EFCAB12Q6NXP0 572 aa10.6□□□□□ -0.71
USP54-214ENST00000492357 LRRC55Q6ZSA7 311 aa10.6□□□□□ -0.71
USP54-214ENST00000492357 SRGAP1Q7Z6B7 1085 aa10.6□□□□□ -0.71
USP54-214ENST00000492357 FRMD5Q7Z6J6 570 aa10.6□□□□□ -0.71
USP54-214ENST00000492357 USP37Q86T82 979 aa10.6□□□□□ -0.71
USP54-214ENST00000492357 RSPH3Q86UC2 560 aa10.6□□□□□ -0.71
USP54-214ENST00000492357 SYCP3Q8IZU3 236 aa10.6□□□□□ -0.71
USP54-214ENST00000492357 LMBR1Q8WVP7 490 aa10.6□□□□□ -0.71
USP54-214ENST00000492357 PRPF31Q8WWY3 499 aaKnown RBP10.6□□□□□ -0.71
USP54-214ENST00000492357 PDLIM2Q96JY6 352 aa10.6□□□□□ -0.71
USP54-214ENST00000492357 GLT1D1Q96MS3 346 aa10.6□□□□□ -0.71
USP54-214ENST00000492357 DUSP9Q99956 384 aaKnown RBP10.6□□□□□ -0.71
USP54-214ENST00000492357 HSD3B7Q9H2F3 369 aa10.6□□□□□ -0.71
USP54-214ENST00000492357 PRMT7Q9NVM4 692 aaPredicted RBP10.6□□□□□ -0.71
USP54-214ENST00000492357 SUCLA2Q9P2R7 463 aaPredicted RBP10.6□□□□□ -0.71
USP54-214ENST00000492357 GTF2IRD1Q9UHL9 959 aa10.6□□□□□ -0.71
USP54-214ENST00000492357 STYXL1Q9Y6J8 313 aa10.6□□□□□ -0.71
USP54-214ENST00000492357 CCDC169A6NNP5 214 aa10.59□□□□□ -0.71
USP54-214ENST00000492357 SFI1A8K8P3 1242 aa10.59□□□□□ -0.71
USP54-214ENST00000492357 KBTBD13C9JR72 458 aa10.59□□□□□ -0.71
USP54-214ENST00000492357 DNM1LO00429 736 aa10.59□□□□□ -0.71
USP54-214ENST00000492357 ASGR1P07306 291 aa10.59□□□□□ -0.71
USP54-214ENST00000492357 MYBP10242 640 aa10.59□□□□□ -0.71
USP54-214ENST00000492357 HSPA8P11142 646 aaKnown RBP10.59□□□□□ -0.71
USP54-214ENST00000492357 CDK11BP21127 795 aaKnown RBP10.59□□□□□ -0.71
USP54-214ENST00000492357 NR2F2P24468 414 aa10.59□□□□□ -0.71
USP54-214ENST00000492357 HOXD13P35453 343 aa10.59□□□□□ -0.71
USP54-214ENST00000492357 CASP5P51878 434 aa10.59□□□□□ -0.71
USP54-214ENST00000492357 TRIM32Q13049 653 aa10.59□□□□□ -0.71
USP54-214ENST00000492357 CAPSQ13938 189 aa10.59□□□□□ -0.71
USP54-214ENST00000492357 LRRC41Q15345 812 aa10.59□□□□□ -0.71
USP54-214ENST00000492357 MAPK6Q16659 721 aa10.59□□□□□ -0.71
USP54-214ENST00000492357 TCP11X2Q5H9J9 407 aa10.59□□□□□ -0.71
USP54-214ENST00000492357 APBB1IPQ7Z5R6 666 aaPredicted RBP10.59□□□□□ -0.71
USP54-214ENST00000492357 ANKLE1Q8NAG6 615 aa10.59□□□□□ -0.71
USP54-214ENST00000492357 SLC43A3Q8NBI5 491 aa10.59□□□□□ -0.71
USP54-214ENST00000492357 ARMC5Q96C12 935 aa10.59□□□□□ -0.71
USP54-214ENST00000492357 SRRTQ9BXP5 876 aaKnown RBP10.59□□□□□ -0.71
USP54-214ENST00000492357 CCDC113Q9H0I3 377 aa10.59□□□□□ -0.71
USP54-214ENST00000492357 FZD8Q9H461 694 aa10.59□□□□□ -0.71
USP54-214ENST00000492357 GPRC5CQ9NQ84 441 aa10.59□□□□□ -0.71
USP54-214ENST00000492357 DMAC2Q9NW81 257 aa10.59□□□□□ -0.71
USP54-214ENST00000492357 PHF24Q9UPV7 400 aa10.59□□□□□ -0.71
USP54-214ENST00000492357 DAAM1Q9Y4D1 1078 aa10.59□□□□□ -0.71
USP54-214ENST00000492357 SQORQ9Y6N5 450 aa10.59□□□□□ -0.71
USP54-214ENST00000492357 ZMYM2Q9UBW7 1377 aa10.59□□□□□ -0.71
USP54-214ENST00000492357 A0A1B0GTH6 734 aa10.58□□□□□ -0.72
USP54-214ENST00000492357 LRRIQ4A6NIV6 560 aa10.58□□□□□ -0.72
USP54-214ENST00000492357 GOLGA6L6A8MZA4 724 aa10.58□□□□□ -0.72
USP54-214ENST00000492357 KCNJ18B7U540 433 aa10.58□□□□□ -0.72
USP54-214ENST00000492357 ACKR2O00590 384 aa10.58□□□□□ -0.72
USP54-214ENST00000492357 SLC16A4O15374 487 aa10.58□□□□□ -0.72
USP54-214ENST00000492357 TGFB1I1O43294 461 aa10.58□□□□□ -0.72
USP54-214ENST00000492357 ECM2O94769 699 aaPredicted RBP10.58□□□□□ -0.72
USP54-214ENST00000492357 PRPF6O94906 941 aaKnown RBP10.58□□□□□ -0.72
USP54-214ENST00000492357 NR3C1P04150 777 aa10.58□□□□□ -0.72
USP54-214ENST00000492357 AXLP30530 894 aa10.58□□□□□ -0.72
USP54-214ENST00000492357 PSMC2P35998 433 aaKnown RBP10.58□□□□□ -0.72
USP54-214ENST00000492357 ACLYP53396 1101 aa10.58□□□□□ -0.72
USP54-214ENST00000492357 FANCCQ00597 558 aa10.58□□□□□ -0.72
USP54-214ENST00000492357 BEX3Q00994 111 aa10.58□□□□□ -0.72
USP54-214ENST00000492357 ADAM9Q13443 819 aa10.58□□□□□ -0.72
USP54-214ENST00000492357 KCNJ12Q14500 433 aa10.58□□□□□ -0.72
USP54-214ENST00000492357 KCNA10Q16322 511 aa10.58□□□□□ -0.72
USP54-214ENST00000492357 KIAA0319LQ8IZA0 1049 aa10.58□□□□□ -0.72
USP54-214ENST00000492357 METTL13Q8N6R0 699 aa10.58□□□□□ -0.72
USP54-214ENST00000492357 ASAP3Q8TDY4 903 aa10.58□□□□□ -0.72
USP54-214ENST00000492357 BSNDQ8WZ55 320 aa10.58□□□□□ -0.72
USP54-214ENST00000492357 HPS3Q969F9 1004 aa10.58□□□□□ -0.72
USP54-214ENST00000492357 TMEM143Q96AN5 459 aa10.58□□□□□ -0.72
USP54-214ENST00000492357 PPP1R9BQ96SB3 815 aa10.58□□□□□ -0.72
USP54-214ENST00000492357 MRPL4Q9BYD3 311 aaKnown RBP10.58□□□□□ -0.72
USP54-214ENST00000492357 TRIM5Q9C035 493 aa10.58□□□□□ -0.72
USP54-214ENST00000492357 SUGCTQ9HAC7 445 aa10.58□□□□□ -0.72
USP54-214ENST00000492357 AGPAT3Q9NRZ7 376 aa10.58□□□□□ -0.72
USP54-214ENST00000492357 OGDHLQ9ULD0 1010 aa10.58□□□□□ -0.72
USP54-214ENST00000492357 MAPK8IP1Q9UQF2 711 aa10.58□□□□□ -0.72
USP54-214ENST00000492357 FRMD4BQ9Y2L6 1034 aa10.58□□□□□ -0.72
USP54-214ENST00000492357 MROH7Q68CQ1 1323 aa10.58□□□□□ -0.72
USP54-214ENST00000492357 A0A1W2PQC6 194 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 TRIM49BA6NDI0 452 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 HNRNPDLO14979 420 aaKnown RBP10.57□□□□□ -0.72
USP54-214ENST00000492357 PMM2O15305 246 aa10.57□□□□□ -0.72
USP54-214ENST00000492357 STX10O60499 249 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms