RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 FGFR4P22455 802 aa12.01□□□□□ -0.49
VPS13D-210ENST00000489961 NPTX2P47972 431 aa12.01□□□□□ -0.49
VPS13D-210ENST00000489961 NDUFA8P51970 172 aa12.01□□□□□ -0.49
VPS13D-210ENST00000489961 EFNA5P52803 228 aa12.01□□□□□ -0.49
VPS13D-210ENST00000489961 SMTNP53814 917 aa12.01□□□□□ -0.49
VPS13D-210ENST00000489961 TCTN1Q2MV58 587 aa12.01□□□□□ -0.49
VPS13D-210ENST00000489961 RASIP1Q5U651 963 aa12.01□□□□□ -0.49
VPS13D-210ENST00000489961 CDCA2Q69YH5 1023 aaPredicted RBP12.01□□□□□ -0.49
VPS13D-210ENST00000489961 DYMQ7RTS9 669 aa12.01□□□□□ -0.49
VPS13D-210ENST00000489961 TMEM87AQ8NBN3 555 aa12.01□□□□□ -0.49
VPS13D-210ENST00000489961 CCDC34Q96HJ3 373 aa12.01□□□□□ -0.49
VPS13D-210ENST00000489961 GBP4Q96PP9 640 aa12.01□□□□□ -0.49
VPS13D-210ENST00000489961 SLC9A7Q96T83 725 aa12.01□□□□□ -0.49
VPS13D-210ENST00000489961 PARVGQ9HBI0 331 aa12.01□□□□□ -0.49
VPS13D-210ENST00000489961 KMT5AQ9NQR1 393 aa12.01□□□□□ -0.49
VPS13D-210ENST00000489961 PRMT7Q9NVM4 692 aaPredicted RBP12.01□□□□□ -0.49
VPS13D-210ENST00000489961 SERTAD1Q9UHV2 236 aa12.01□□□□□ -0.49
VPS13D-210ENST00000489961 PHLPP2Q6ZVD8 1323 aa12.01□□□□□ -0.49
VPS13D-210ENST00000489961 H0YCG3 227 aa12□□□□□ -0.49
VPS13D-210ENST00000489961 IDEP14735 1019 aa12□□□□□ -0.49
VPS13D-210ENST00000489961 AXLP30530 894 aa12□□□□□ -0.49
VPS13D-210ENST00000489961 ZNF131P52739 623 aa12□□□□□ -0.49
VPS13D-210ENST00000489961 WDR5P61964 334 aaKnown RBP12□□□□□ -0.49
VPS13D-210ENST00000489961 MBTD1Q05BQ5 628 aa12□□□□□ -0.49
VPS13D-210ENST00000489961 MAPK6Q16659 721 aa12□□□□□ -0.49
VPS13D-210ENST00000489961 CLEC17AQ6ZS10 378 aa12□□□□□ -0.49
VPS13D-210ENST00000489961 CCDC65Q8IXS2 484 aa12□□□□□ -0.49
VPS13D-210ENST00000489961 MYCT1Q8N699 235 aa12□□□□□ -0.49
VPS13D-210ENST00000489961 PHOSPHO2Q8TCD6 241 aa12□□□□□ -0.49
VPS13D-210ENST00000489961 SPIRE2Q8WWL2 714 aa12□□□□□ -0.49
VPS13D-210ENST00000489961 STAMQ92783 540 aa12□□□□□ -0.49
VPS13D-210ENST00000489961 ADAM2Q99965 735 aa12□□□□□ -0.49
VPS13D-210ENST00000489961 NTPCRQ9BSD7 190 aaKnown RBP12□□□□□ -0.49
VPS13D-210ENST00000489961 TMX1Q9H3N1 280 aa12□□□□□ -0.49
VPS13D-210ENST00000489961 GOLPH3LQ9H4A5 285 aa12□□□□□ -0.49
VPS13D-210ENST00000489961 MINDY3Q9H8M7 445 aa12□□□□□ -0.49
VPS13D-210ENST00000489961 CHST12Q9NRB3 414 aa12□□□□□ -0.49
VPS13D-210ENST00000489961 C1orf112Q9NSG2 853 aa12□□□□□ -0.49
VPS13D-210ENST00000489961 RNF216Q9NWF9 866 aaPredicted RBP12□□□□□ -0.49
VPS13D-210ENST00000489961 DACT1Q9NYF0 836 aa12□□□□□ -0.49
VPS13D-210ENST00000489961 CXXC1Q9P0U4 656 aaPredicted RBP12□□□□□ -0.49
VPS13D-210ENST00000489961 PIN4Q9Y237 131 aaKnown RBP12□□□□□ -0.49
VPS13D-210ENST00000489961 K7ERI5 159 aa11.99□□□□□ -0.49
VPS13D-210ENST00000489961 ENPP3O14638 875 aa11.99□□□□□ -0.49
VPS13D-210ENST00000489961 ACTN4O43707 911 aaKnown RBP11.99□□□□□ -0.49
VPS13D-210ENST00000489961 TRAK2O60296 914 aa11.99□□□□□ -0.49
VPS13D-210ENST00000489961 ZNF202O95125 648 aa11.99□□□□□ -0.49
VPS13D-210ENST00000489961 PRKCBP05771 671 aa11.99□□□□□ -0.49
VPS13D-210ENST00000489961 ATP2A2P16615 1042 aaKnown RBP11.99□□□□□ -0.49
VPS13D-210ENST00000489961 GAP43P17677 238 aa11.99□□□□□ -0.49
VPS13D-210ENST00000489961 LIG1P18858 919 aa11.99□□□□□ -0.49
VPS13D-210ENST00000489961 SCP2P22307 547 aa11.99□□□□□ -0.49
VPS13D-210ENST00000489961 AFMP43652 599 aa11.99□□□□□ -0.49
VPS13D-210ENST00000489961 ASIC1P78348 528 aa11.99□□□□□ -0.49
VPS13D-210ENST00000489961 DSC3Q14574 896 aa11.99□□□□□ -0.49
VPS13D-210ENST00000489961 FAM187BQ17R55 369 aa11.99□□□□□ -0.49
VPS13D-210ENST00000489961 LONRF3Q496Y0 759 aa11.99□□□□□ -0.49
VPS13D-210ENST00000489961 PPP4R3CPQ6ZMV5 832 aa11.99□□□□□ -0.49
VPS13D-210ENST00000489961 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.99□□□□□ -0.49
VPS13D-210ENST00000489961 FAM178BQ8IXR5 827 aa11.99□□□□□ -0.49
VPS13D-210ENST00000489961 MYOCDQ8IZQ8 938 aa11.99□□□□□ -0.49
VPS13D-210ENST00000489961 SLC17A8Q8NDX2 589 aa11.99□□□□□ -0.49
VPS13D-210ENST00000489961 CNNM3Q8NE01 707 aa11.99□□□□□ -0.49
VPS13D-210ENST00000489961 DNAJC19Q96DA6 116 aa11.99□□□□□ -0.49
VPS13D-210ENST00000489961 PRIMPOLQ96LW4 560 aa11.99□□□□□ -0.49
VPS13D-210ENST00000489961 C7orf25Q9BPX7 421 aa11.99□□□□□ -0.49
VPS13D-210ENST00000489961 KIFC3Q9BVG8 833 aa11.99□□□□□ -0.49
VPS13D-210ENST00000489961 TRIM9Q9C026 710 aa11.99□□□□□ -0.49
VPS13D-210ENST00000489961 TSPYL2Q9H2G4 693 aaPredicted RBP11.99□□□□□ -0.49
VPS13D-210ENST00000489961 TMEM134Q9H6X4 195 aa11.99□□□□□ -0.49
VPS13D-210ENST00000489961 RGS18Q9NS28 235 aa11.99□□□□□ -0.49
VPS13D-210ENST00000489961 AGPAT5Q9NUQ2 364 aa11.99□□□□□ -0.49
VPS13D-210ENST00000489961 PANK4Q9NVE7 773 aa11.99□□□□□ -0.49
VPS13D-210ENST00000489961 SEL1LQ9UBV2 794 aa11.99□□□□□ -0.49
VPS13D-210ENST00000489961 ADGRA3Q8IWK6 1321 aa11.99□□□□□ -0.49
VPS13D-210ENST00000489961 PTPRSQ13332 1948 aa11.98□□□□□ -0.49
VPS13D-210ENST00000489961 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.98□□□□□ -0.49
VPS13D-210ENST00000489961 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.98□□□□□ -0.49
VPS13D-210ENST00000489961 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.98□□□□□ -0.49
VPS13D-210ENST00000489961 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.98□□□□□ -0.49
VPS13D-210ENST00000489961 RBAK-RBAKDNI3L0D1 243 aa11.98□□□□□ -0.49
VPS13D-210ENST00000489961 K7ENM7 598 aa11.98□□□□□ -0.49
VPS13D-210ENST00000489961 SLC16A4O15374 487 aa11.98□□□□□ -0.49
VPS13D-210ENST00000489961 MGEA5O60502 916 aa11.98□□□□□ -0.49
VPS13D-210ENST00000489961 TSPAN1O60635 241 aa11.98□□□□□ -0.49
VPS13D-210ENST00000489961 PRPF40AO75400 957 aaKnown RBP11.98□□□□□ -0.49
VPS13D-210ENST00000489961 MYL1P05976 194 aa11.98□□□□□ -0.49
VPS13D-210ENST00000489961 STAG3L1P0CL83 205 aa11.98□□□□□ -0.49
VPS13D-210ENST00000489961 SKIP12755 728 aa11.98□□□□□ -0.49
VPS13D-210ENST00000489961 ABCD1P33897 745 aa11.98□□□□□ -0.49
VPS13D-210ENST00000489961 NCKAP1LP55160 1127 aa11.98□□□□□ -0.49
VPS13D-210ENST00000489961 UBE2HP62256 183 aa11.98□□□□□ -0.49
VPS13D-210ENST00000489961 DEFB103AP81534 67 aa11.98□□□□□ -0.49
VPS13D-210ENST00000489961 FAM160A1Q05DH4 1040 aa11.98□□□□□ -0.49
VPS13D-210ENST00000489961 STRN3Q13033 797 aa11.98□□□□□ -0.49
VPS13D-210ENST00000489961 PRPF4BQ13523 1007 aaKnown RBP11.98□□□□□ -0.49
VPS13D-210ENST00000489961 TMEM132AQ24JP5 1023 aa11.98□□□□□ -0.49
VPS13D-210ENST00000489961 TWF2Q6IBS0 349 aaKnown RBP11.98□□□□□ -0.49
VPS13D-210ENST00000489961 KANK3Q6NY19 840 aa11.98□□□□□ -0.49
VPS13D-210ENST00000489961 CNNM4Q6P4Q7 775 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms