RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 GLRA2P23416 452 aa22.7■■□□□ 1.22
HDAC4-209ENST00000487617 DNAJB1P25685 340 aa22.7■■□□□ 1.22
HDAC4-209ENST00000487617 CUL4AQ13619 759 aa22.7■■□□□ 1.22
HDAC4-209ENST00000487617 CAPSQ13938 189 aa22.7■■□□□ 1.22
HDAC4-209ENST00000487617 CAMK1Q14012 370 aa22.7■■□□□ 1.22
HDAC4-209ENST00000487617 CSPP1Q1MSJ5 1256 aa22.7■■□□□ 1.22
HDAC4-209ENST00000487617 LONRF3Q496Y0 759 aa22.7■■□□□ 1.22
HDAC4-209ENST00000487617 THNSL1Q8IYQ7 743 aa22.7■■□□□ 1.22
HDAC4-209ENST00000487617 MCPH1Q8NEM0 835 aa22.7■■□□□ 1.22
HDAC4-209ENST00000487617 ADAMTS19Q8TE59 1207 aa22.7■■□□□ 1.22
HDAC4-209ENST00000487617 POF1BQ8WVV4 589 aa22.7■■□□□ 1.22
HDAC4-209ENST00000487617 LPPQ93052 612 aa22.7■■□□□ 1.22
HDAC4-209ENST00000487617 GPRC5CQ9NQ84 441 aa22.7■■□□□ 1.22
HDAC4-209ENST00000487617 STK24Q9Y6E0 443 aa22.7■■□□□ 1.22
HDAC4-209ENST00000487617 ARID2Q68CP9 1835 aa22.7■■□□□ 1.22
HDAC4-209ENST00000487617 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP22.69■■□□□ 1.22
HDAC4-209ENST00000487617 INO80B-WBP1J3KQ70 363 aa22.69■■□□□ 1.22
HDAC4-209ENST00000487617 BMP1P13497 986 aa22.69■■□□□ 1.22
HDAC4-209ENST00000487617 HOXA11P31270 313 aaPredicted RBP22.69■■□□□ 1.22
HDAC4-209ENST00000487617 PRPHP41219 470 aa22.69■■□□□ 1.22
HDAC4-209ENST00000487617 POU5F1BQ06416 359 aa22.69■■□□□ 1.22
HDAC4-209ENST00000487617 ECM1Q16610 540 aa22.69■■□□□ 1.22
HDAC4-209ENST00000487617 DTHD1Q6ZMT9 781 aa22.69■■□□□ 1.22
HDAC4-209ENST00000487617 IGSF22Q8N9C0 903 aa22.69■■□□□ 1.22
HDAC4-209ENST00000487617 SNX29Q8TEQ0 813 aa22.69■■□□□ 1.22
HDAC4-209ENST00000487617 PCDHB2Q9Y5E7 798 aa22.69■■□□□ 1.22
HDAC4-209ENST00000487617 FNDC1Q4ZHG4 1894 aaPredicted RBP22.68■■□□□ 1.22
HDAC4-209ENST00000487617 ZNF623O75123 536 aa22.68■■□□□ 1.22
HDAC4-209ENST00000487617 FGF18O76093 207 aa22.68■■□□□ 1.22
HDAC4-209ENST00000487617 KCNA5P22460 613 aa22.68■■□□□ 1.22
HDAC4-209ENST00000487617 NCBP1Q09161 790 aaKnown RBP22.68■■□□□ 1.22
HDAC4-209ENST00000487617 PCBP1Q15365 356 aaKnown RBP eCLIP22.68■■□□□ 1.22
HDAC4-209ENST00000487617 IL17AQ16552 155 aa22.68■■□□□ 1.22
HDAC4-209ENST00000487617 PADI6Q6TGC4 694 aa22.68■■□□□ 1.22
HDAC4-209ENST00000487617 EP400NLQ6ZTU2 488 aa22.68■■□□□ 1.22
HDAC4-209ENST00000487617 IFNLR1Q8IU57 520 aaPredicted RBP22.68■■□□□ 1.22
HDAC4-209ENST00000487617 PGBD4Q96DM1 585 aa22.68■■□□□ 1.22
HDAC4-209ENST00000487617 ZNF558Q96NG5 402 aa22.68■■□□□ 1.22
HDAC4-209ENST00000487617 MRPL9Q9BYD2 267 aaKnown RBP22.68■■□□□ 1.22
HDAC4-209ENST00000487617 KIAA1024Q9UPX6 916 aa22.68■■□□□ 1.22
HDAC4-209ENST00000487617 GTF3C3Q9Y5Q9 886 aa22.68■■□□□ 1.22
HDAC4-209ENST00000487617 TSPAN1O60635 241 aa22.67■■□□□ 1.22
HDAC4-209ENST00000487617 CYP11B2P19099 503 aa22.67■■□□□ 1.22
HDAC4-209ENST00000487617 IRS1P35568 1242 aa22.67■■□□□ 1.22
HDAC4-209ENST00000487617 UBE3AQ05086 875 aa22.67■■□□□ 1.22
HDAC4-209ENST00000487617 MBTD1Q05BQ5 628 aa22.67■■□□□ 1.22
HDAC4-209ENST00000487617 KRT79Q5XKE5 535 aa22.67■■□□□ 1.22
HDAC4-209ENST00000487617 KCNT2Q6UVM3 1135 aa22.67■■□□□ 1.22
HDAC4-209ENST00000487617 GLB1LQ6UWU2 654 aa22.67■■□□□ 1.22
HDAC4-209ENST00000487617 PABPC5Q96DU9 382 aaKnown RBP22.67■■□□□ 1.22
HDAC4-209ENST00000487617 UHRF1Q96T88 793 aaPredicted RBP22.67■■□□□ 1.22
HDAC4-209ENST00000487617 NFKBIZQ9BYH8 718 aa22.67■■□□□ 1.22
HDAC4-209ENST00000487617 DDX19AQ9NUU7 478 aaKnown RBP22.67■■□□□ 1.22
HDAC4-209ENST00000487617 KIAA1671Q9BY89 1806 aa22.66■■□□□ 1.22
HDAC4-209ENST00000487617 LRRIQ4A6NIV6 560 aa22.66■■□□□ 1.22
HDAC4-209ENST00000487617 MEIS3P2A8K0S8 358 aa22.66■■□□□ 1.22
HDAC4-209ENST00000487617 PP2D1A8MPX8 630 aa22.66■■□□□ 1.22
HDAC4-209ENST00000487617 NCK2O43639 380 aa22.66■■□□□ 1.22
HDAC4-209ENST00000487617 AXLP30530 894 aa22.66■■□□□ 1.22
HDAC4-209ENST00000487617 PBX3P40426 434 aa22.66■■□□□ 1.22
HDAC4-209ENST00000487617 ATP2C1P98194 919 aaPredicted RBP22.66■■□□□ 1.22
HDAC4-209ENST00000487617 HYAL1Q12794 435 aa22.66■■□□□ 1.22
HDAC4-209ENST00000487617 UBXN11Q5T124 520 aa22.66■■□□□ 1.22
HDAC4-209ENST00000487617 MICAL1Q8TDZ2 1067 aa22.66■■□□□ 1.22
HDAC4-209ENST00000487617 RSPH1Q8WYR4 309 aa22.66■■□□□ 1.22
HDAC4-209ENST00000487617 PPP2R3CQ969Q6 453 aa22.66■■□□□ 1.22
HDAC4-209ENST00000487617 CPB2Q96IY4 423 aa22.66■■□□□ 1.22
HDAC4-209ENST00000487617 BHMT2Q9H2M3 363 aa22.66■■□□□ 1.22
HDAC4-209ENST00000487617 CLDND1Q9NY35 253 aa22.66■■□□□ 1.22
HDAC4-209ENST00000487617 INPP5FQ9Y2H2 1132 aa22.66■■□□□ 1.22
HDAC4-209ENST00000487617 CDC25AP30304 524 aa22.65■■□□□ 1.22
HDAC4-209ENST00000487617 LEXMQ3ZCV2 418 aa22.65■■□□□ 1.22
HDAC4-209ENST00000487617 NOMO2Q5JPE7 1267 aa22.65■■□□□ 1.22
HDAC4-209ENST00000487617 NOTUMQ6P988 496 aa22.65■■□□□ 1.22
HDAC4-209ENST00000487617 MRPL10Q7Z7H8 261 aaKnown RBP22.65■■□□□ 1.22
HDAC4-209ENST00000487617 IGFLR1Q9H665 355 aa22.65■■□□□ 1.22
HDAC4-209ENST00000487617 SPG21Q9NZD8 308 aa22.65■■□□□ 1.22
HDAC4-209ENST00000487617 CUL9Q8IWT3 2517 aa22.64■■□□□ 1.22
HDAC4-209ENST00000487617 MYO7AQ13402 2215 aa22.64■■□□□ 1.21
HDAC4-209ENST00000487617 VPS37CA5D8V6 355 aaPredicted RBP22.64■■□□□ 1.21
HDAC4-209ENST00000487617 OFD1O75665 1012 aa22.64■■□□□ 1.21
HDAC4-209ENST00000487617 PPM1AP35813 382 aa22.64■■□□□ 1.21
HDAC4-209ENST00000487617 PLCB3Q01970 1234 aa22.64■■□□□ 1.21
HDAC4-209ENST00000487617 COL19A1Q14993 1142 aa22.64■■□□□ 1.21
HDAC4-209ENST00000487617 AMHR2Q16671 573 aa22.64■■□□□ 1.21
HDAC4-209ENST00000487617 AGMOQ6ZNB7 445 aa22.64■■□□□ 1.21
HDAC4-209ENST00000487617 BRAPQ7Z569 592 aa22.64■■□□□ 1.21
HDAC4-209ENST00000487617 ADGRD2Q7Z7M1 963 aa22.64■■□□□ 1.21
HDAC4-209ENST00000487617 CCDC51Q96ER9 411 aa22.64■■□□□ 1.21
HDAC4-209ENST00000487617 TLR9Q9NR96 1032 aa22.64■■□□□ 1.21
HDAC4-209ENST00000487617 PUF60Q9UHX1 559 aaKnown RBP22.64■■□□□ 1.21
HDAC4-209ENST00000487617 DNM3Q9UQ16 869 aa22.64■■□□□ 1.21
HDAC4-209ENST00000487617 PCDHGC5Q9Y5F6 944 aa22.64■■□□□ 1.21
HDAC4-209ENST00000487617 REV3LO60673 3130 aa22.64■■□□□ 1.21
HDAC4-209ENST00000487617 H3BQ06 376 aaPredicted RBP22.63■■□□□ 1.21
HDAC4-209ENST00000487617 PDCP20941 246 aa22.63■■□□□ 1.21
HDAC4-209ENST00000487617 GTF2F1P35269 517 aaKnown RBP eCLIP22.63■■□□□ 1.21
HDAC4-209ENST00000487617 ALDH7A1P49419 539 aaKnown RBP22.63■■□□□ 1.21
HDAC4-209ENST00000487617 KRT17Q04695 432 aa22.63■■□□□ 1.21
HDAC4-209ENST00000487617 RNASELQ05823 741 aaKnown RBP22.63■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms