RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 TNFRSF12AQ9NP84 129 aa5.08□□□□□ -1.6
PTCD3-216ENST00000487043 ARHGAP28Q9P2N2 729 aa5.08□□□□□ -1.6
PTCD3-216ENST00000487043 SERPINB13Q9UIV8 391 aa5.08□□□□□ -1.6
PTCD3-216ENST00000487043 DNM3Q9UQ16 869 aa5.08□□□□□ -1.6
PTCD3-216ENST00000487043 ABCC2Q92887 1545 aa5.07□□□□□ -1.6
PTCD3-216ENST00000487043 PCDH8O95206 1070 aa5.07□□□□□ -1.6
PTCD3-216ENST00000487043 ZBTB7AO95365 584 aa5.07□□□□□ -1.6
PTCD3-216ENST00000487043 POU2F2P09086 479 aa5.07□□□□□ -1.6
PTCD3-216ENST00000487043 RGS3P49796 1198 aa5.07□□□□□ -1.6
PTCD3-216ENST00000487043 FXR1P51114 621 aaKnown RBP eCLIP5.07□□□□□ -1.6
PTCD3-216ENST00000487043 ROM1Q03395 351 aa5.07□□□□□ -1.6
PTCD3-216ENST00000487043 SAFB2Q14151 953 aaKnown RBP eCLIP5.07□□□□□ -1.6
PTCD3-216ENST00000487043 TRIM25Q14258 630 aaKnown RBP5.07□□□□□ -1.6
PTCD3-216ENST00000487043 SNX17Q15036 470 aa5.07□□□□□ -1.6
PTCD3-216ENST00000487043 MUM1Q2TAK8 710 aa5.07□□□□□ -1.6
PTCD3-216ENST00000487043 MBNL2Q5VZF2 373 aaKnown RBP5.07□□□□□ -1.6
PTCD3-216ENST00000487043 KIAA1841Q6NSI8 718 aa5.07□□□□□ -1.6
PTCD3-216ENST00000487043 THEMISQ8N1K5 641 aaPredicted RBP5.07□□□□□ -1.6
PTCD3-216ENST00000487043 ZBTB34Q8NCN2 500 aa5.07□□□□□ -1.6
PTCD3-216ENST00000487043 ZNF526Q8TF50 670 aaPredicted RBP5.07□□□□□ -1.6
PTCD3-216ENST00000487043 HPS3Q969F9 1004 aa5.07□□□□□ -1.6
PTCD3-216ENST00000487043 SHISA4Q96DD7 197 aa5.07□□□□□ -1.6
PTCD3-216ENST00000487043 MAP3K14Q99558 947 aa5.07□□□□□ -1.6
PTCD3-216ENST00000487043 ACO2Q99798 780 aaKnown RBP5.07□□□□□ -1.6
PTCD3-216ENST00000487043 RNF32Q9H0A6 362 aa5.07□□□□□ -1.6
PTCD3-216ENST00000487043 IFT122Q9HBG6 1241 aa5.07□□□□□ -1.6
PTCD3-216ENST00000487043 SLC39A2Q9NP94 309 aa5.07□□□□□ -1.6
PTCD3-216ENST00000487043 BTBD7Q9P203 1132 aa5.07□□□□□ -1.6
PTCD3-216ENST00000487043 HCFC2Q9Y5Z7 792 aa5.07□□□□□ -1.6
PTCD3-216ENST00000487043 CDK13Q14004 1512 aaKnown RBP5.07□□□□□ -1.6
PTCD3-216ENST00000487043 MAGI3Q5TCQ9 1506 aa5.07□□□□□ -1.6
PTCD3-216ENST00000487043 HOXA5P20719 270 aa5.06□□□□□ -1.6
PTCD3-216ENST00000487043 PDCP20941 246 aa5.06□□□□□ -1.6
PTCD3-216ENST00000487043 PRR5P85299 388 aa5.06□□□□□ -1.6
PTCD3-216ENST00000487043 ALDH6A1Q02252 535 aaKnown RBP5.06□□□□□ -1.6
PTCD3-216ENST00000487043 RAB3GAP1Q15042 981 aa5.06□□□□□ -1.6
PTCD3-216ENST00000487043 LLGL1Q15334 1064 aa5.06□□□□□ -1.6
PTCD3-216ENST00000487043 ATAT1Q5SQI0 421 aa5.06□□□□□ -1.6
PTCD3-216ENST00000487043 CD276Q5ZPR3 534 aa5.06□□□□□ -1.6
PTCD3-216ENST00000487043 TMEM132EQ6IEE7 984 aa5.06□□□□□ -1.6
PTCD3-216ENST00000487043 ZNF605Q86T29 641 aa5.06□□□□□ -1.6
PTCD3-216ENST00000487043 CAMKK1Q8N5S9 505 aa5.06□□□□□ -1.6
PTCD3-216ENST00000487043 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.06□□□□□ -1.6
PTCD3-216ENST00000487043 PPP1R35Q8TAP8 253 aa5.06□□□□□ -1.6
PTCD3-216ENST00000487043 DIS3LQ8TF46 1054 aaKnown RBP5.06□□□□□ -1.6
PTCD3-216ENST00000487043 TSPEARQ8WU66 669 aa5.06□□□□□ -1.6
PTCD3-216ENST00000487043 COA7Q96BR5 231 aa5.06□□□□□ -1.6
PTCD3-216ENST00000487043 TOE1Q96GM8 510 aaKnown RBP5.06□□□□□ -1.6
PTCD3-216ENST00000487043 FOXB1Q99853 325 aa5.06□□□□□ -1.6
PTCD3-216ENST00000487043 ARPC5LQ9BPX5 153 aa5.06□□□□□ -1.6
PTCD3-216ENST00000487043 ACE2Q9BYF1 805 aaPredicted RBP5.06□□□□□ -1.6
PTCD3-216ENST00000487043 WNT8AQ9H1J5 351 aa5.06□□□□□ -1.6
PTCD3-216ENST00000487043 ZCCHC4Q9H5U6 513 aa5.06□□□□□ -1.6
PTCD3-216ENST00000487043 DTLQ9NZJ0 730 aa5.06□□□□□ -1.6
PTCD3-216ENST00000487043 TMPRSS11EQ9UL52 423 aa5.06□□□□□ -1.6
PTCD3-216ENST00000487043 USP18Q9UMW8 372 aa5.06□□□□□ -1.6
PTCD3-216ENST00000487043 NUMBLQ9Y6R0 609 aa5.06□□□□□ -1.6
PTCD3-216ENST00000487043 ARHGEF11O15085 1522 aa5.06□□□□□ -1.6
PTCD3-216ENST00000487043 EHBP1L1Q8N3D4 1523 aa5.06□□□□□ -1.6
PTCD3-216ENST00000487043 KDM5BQ9UGL1 1544 aa5.06□□□□□ -1.6
PTCD3-216ENST00000487043 TROQ12816 1431 aaPredicted RBP5.06□□□□□ -1.6
PTCD3-216ENST00000487043 RRBP1Q9P2E9 1410 aaKnown RBP5.06□□□□□ -1.6
PTCD3-216ENST00000487043 MYPNQ86TC9 1320 aa5.05□□□□□ -1.6
PTCD3-216ENST00000487043 A6NNZ2 444 aa5.05□□□□□ -1.6
PTCD3-216ENST00000487043 LRG1P02750 347 aa5.05□□□□□ -1.6
PTCD3-216ENST00000487043 MPOP05164 745 aa5.05□□□□□ -1.6
PTCD3-216ENST00000487043 PFKMP08237 780 aa5.05□□□□□ -1.6
PTCD3-216ENST00000487043 PHKG2P15735 406 aa5.05□□□□□ -1.6
PTCD3-216ENST00000487043 BMP7P18075 431 aa5.05□□□□□ -1.6
PTCD3-216ENST00000487043 PTGS1P23219 599 aa5.05□□□□□ -1.6
PTCD3-216ENST00000487043 SLC16A1P53985 500 aa5.05□□□□□ -1.6
PTCD3-216ENST00000487043 USP14P54578 494 aa5.05□□□□□ -1.6
PTCD3-216ENST00000487043 PPARAQ07869 468 aa5.05□□□□□ -1.6
PTCD3-216ENST00000487043 SPIDRQ14159 915 aa5.05□□□□□ -1.6
PTCD3-216ENST00000487043 SLC9A5Q14940 896 aa5.05□□□□□ -1.6
PTCD3-216ENST00000487043 NOLC1Q14978 699 aaKnown RBP eCLIP5.05□□□□□ -1.61e-323■■■■■ 29.3
PTCD3-216ENST00000487043 NR1I3Q14994 352 aa5.05□□□□□ -1.6
PTCD3-216ENST00000487043 ADGRF1Q5T601 910 aa5.05□□□□□ -1.6
PTCD3-216ENST00000487043 C10orf62Q5T681 223 aaPredicted RBP5.05□□□□□ -1.6
PTCD3-216ENST00000487043 LRSAM1Q6UWE0 723 aa5.05□□□□□ -1.6
PTCD3-216ENST00000487043 RPTNQ6XPR3 784 aa5.05□□□□□ -1.6
PTCD3-216ENST00000487043 TSHZ1Q6ZSZ6 1077 aa5.05□□□□□ -1.6
PTCD3-216ENST00000487043 USP45Q70EL2 814 aa5.05□□□□□ -1.6
PTCD3-216ENST00000487043 KANSL1Q7Z3B3 1105 aa5.05□□□□□ -1.6
PTCD3-216ENST00000487043 LYSMD2Q8IV50 215 aa5.05□□□□□ -1.6
PTCD3-216ENST00000487043 FAM126BQ8IXS8 530 aa5.05□□□□□ -1.6
PTCD3-216ENST00000487043 FBXO41Q8TF61 875 aa5.05□□□□□ -1.6
PTCD3-216ENST00000487043 RPGRQ92834 1020 aaKnown RBP5.05□□□□□ -1.6
PTCD3-216ENST00000487043 MVB12AQ96EY5 273 aa5.05□□□□□ -1.6
PTCD3-216ENST00000487043 AMNQ9BXJ7 453 aa5.05□□□□□ -1.6
PTCD3-216ENST00000487043 SLC6A17Q9H1V8 727 aa5.05□□□□□ -1.6
PTCD3-216ENST00000487043 RBPJLQ9UBG7 517 aa5.05□□□□□ -1.6
PTCD3-216ENST00000487043 PRSS50Q9UI38 385 aa5.05□□□□□ -1.6
PTCD3-216ENST00000487043 SUPT6HQ7KZ85 1726 aaKnown RBP5.05□□□□□ -1.6
PTCD3-216ENST00000487043 NCOA2Q15596 1464 aa5.05□□□□□ -1.6
PTCD3-216ENST00000487043 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP5.04□□□□□ -1.6
PTCD3-216ENST00000487043 ANO9A1A5B4 782 aa5.04□□□□□ -1.6
PTCD3-216ENST00000487043 TPP1O14773 563 aa5.04□□□□□ -1.6
PTCD3-216ENST00000487043 PMM2O15305 246 aa5.04□□□□□ -1.6
PTCD3-216ENST00000487043 MPIG6BO95866 241 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms