RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 CHADLQ6NUI6 762 aa14.34□□□□□ -0.11
USP40-214ENST00000483519 CEP120Q8N960 986 aa14.34□□□□□ -0.11
USP40-214ENST00000483519 EPS8L3Q8TE67 593 aaKnown RBP14.34□□□□□ -0.11
USP40-214ENST00000483519 SEMA4AQ9H3S1 761 aa14.34□□□□□ -0.11
USP40-214ENST00000483519 FRMPD2Q68DX3 1309 aaPredicted RBP14.34□□□□□ -0.11
USP40-214ENST00000483519 DIAPH2O60879 1101 aa14.34□□□□□ -0.11
USP40-214ENST00000483519 AKAP3O75969 853 aa14.34□□□□□ -0.11
USP40-214ENST00000483519 LUC7L3O95232 432 aaKnown RBP14.34□□□□□ -0.11
USP40-214ENST00000483519 MMP10P09238 476 aa14.34□□□□□ -0.11
USP40-214ENST00000483519 SOX5P35711 763 aa14.34□□□□□ -0.11
USP40-214ENST00000483519 CASP5P51878 434 aa14.34□□□□□ -0.11
USP40-214ENST00000483519 SLC12A3P55017 1021 aa14.34□□□□□ -0.11
USP40-214ENST00000483519 NFIXQ14938 502 aa14.34□□□□□ -0.11
USP40-214ENST00000483519 UBE2SQ16763 222 aa14.34□□□□□ -0.11
USP40-214ENST00000483519 GLYCTKQ8IVS8 523 aa14.34□□□□□ -0.11
USP40-214ENST00000483519 SLC35C1Q96A29 364 aa14.34□□□□□ -0.11
USP40-214ENST00000483519 ZNF570Q96NI8 536 aa14.34□□□□□ -0.11
USP40-214ENST00000483519 ROPN1BQ9BZX4 212 aaPredicted RBP14.34□□□□□ -0.11
USP40-214ENST00000483519 DHX36Q9H2U1 1008 aaKnown RBP14.34□□□□□ -0.11
USP40-214ENST00000483519 ROPN1Q9HAT0 212 aaPredicted RBP14.34□□□□□ -0.11
USP40-214ENST00000483519 RIPK2O43353 540 aa14.33□□□□□ -0.12
USP40-214ENST00000483519 RARGP13631 454 aa14.33□□□□□ -0.12
USP40-214ENST00000483519 ABCB4P21439 1286 aa14.33□□□□□ -0.12
USP40-214ENST00000483519 CLK2P49760 499 aaKnown RBP14.33□□□□□ -0.12
USP40-214ENST00000483519 ATP11AP98196 1134 aa14.33□□□□□ -0.12
USP40-214ENST00000483519 BNIP1Q12981 228 aa14.33□□□□□ -0.12
USP40-214ENST00000483519 ZNF211Q13398 564 aaPredicted RBP14.33□□□□□ -0.12
USP40-214ENST00000483519 TMCO4Q5TGY1 634 aa14.33□□□□□ -0.12
USP40-214ENST00000483519 TBC1D9BQ66K14 1250 aa14.33□□□□□ -0.12
USP40-214ENST00000483519 CNKSR1Q969H4 720 aa14.33□□□□□ -0.12
USP40-214ENST00000483519 GJA10Q969M2 543 aa14.33□□□□□ -0.12
USP40-214ENST00000483519 TYW1Q9NV66 732 aaKnown RBP14.33□□□□□ -0.12
USP40-214ENST00000483519 PCYOX1Q9UHG3 505 aa14.33□□□□□ -0.12
USP40-214ENST00000483519 DDX60LQ5H9U9 1706 aaKnown RBP14.33□□□□□ -0.12
USP40-214ENST00000483519 MIF4GDA9UHW6 222 aaKnown RBP14.33□□□□□ -0.12
USP40-214ENST00000483519 SKAP2O75563 359 aaPredicted RBP14.33□□□□□ -0.12
USP40-214ENST00000483519 NR3C1P04150 777 aa14.33□□□□□ -0.12
USP40-214ENST00000483519 VCAM1P19320 739 aa14.33□□□□□ -0.12
USP40-214ENST00000483519 ATP5DP30049 168 aa14.33□□□□□ -0.12
USP40-214ENST00000483519 PTGIRP43119 386 aa14.33□□□□□ -0.12
USP40-214ENST00000483519 SLCO1A2P46721 670 aa14.33□□□□□ -0.12
USP40-214ENST00000483519 RPL21P46778 160 aaKnown RBP14.33□□□□□ -0.12
USP40-214ENST00000483519 CCNHP51946 323 aaPredicted RBP14.33□□□□□ -0.12
USP40-214ENST00000483519 ICA1Q05084 483 aa14.33□□□□□ -0.12
USP40-214ENST00000483519 AUHQ13825 339 aaKnown RBP14.33□□□□□ -0.12
USP40-214ENST00000483519 DIXDC1Q155Q3 683 aa14.33□□□□□ -0.12
USP40-214ENST00000483519 ARSHQ5FYA8 562 aa14.33□□□□□ -0.12
USP40-214ENST00000483519 CAPRIN2Q6IMN6 1127 aaKnown RBP14.33□□□□□ -0.12
USP40-214ENST00000483519 UBL4BQ8N7F7 174 aa14.33□□□□□ -0.12
USP40-214ENST00000483519 C18orf8Q96DM3 657 aa14.33□□□□□ -0.12
USP40-214ENST00000483519 ARHGEF3Q9NR81 526 aa14.33□□□□□ -0.12
USP40-214ENST00000483519 FGFR4P22455 802 aa14.32□□□□□ -0.12
USP40-214ENST00000483519 NOVP48745 357 aa14.32□□□□□ -0.12
USP40-214ENST00000483519 GJB7Q6PEY0 223 aa14.32□□□□□ -0.12
USP40-214ENST00000483519 BICDL1Q6ZP65 573 aa14.32□□□□□ -0.12
USP40-214ENST00000483519 EPM2AIP1Q7L775 607 aaPredicted RBP14.32□□□□□ -0.12
USP40-214ENST00000483519 TBC1D16Q8TBP0 767 aa14.32□□□□□ -0.12
USP40-214ENST00000483519 ANKRD27Q96NW4 1050 aa14.32□□□□□ -0.12
USP40-214ENST00000483519 FGFR1OP2Q9NVK5 253 aa14.32□□□□□ -0.12
USP40-214ENST00000483519 SLC5A4Q9NY91 659 aa14.32□□□□□ -0.12
USP40-214ENST00000483519 ARL2BPQ9Y2Y0 163 aa14.32□□□□□ -0.12
USP40-214ENST00000483519 PNMA6FA0A0J9YX94 578 aa14.32□□□□□ -0.12
USP40-214ENST00000483519 TCP11X1B4DZS4 312 aa14.32□□□□□ -0.12
USP40-214ENST00000483519 SMNDC1O75940 238 aaKnown RBP eCLIP14.32□□□□□ -0.12
USP40-214ENST00000483519 GGPS1O95749 300 aa14.32□□□□□ -0.12
USP40-214ENST00000483519 ATP2A2P16615 1042 aaKnown RBP14.32□□□□□ -0.12
USP40-214ENST00000483519 MSH2P43246 934 aa14.32□□□□□ -0.12
USP40-214ENST00000483519 SFR1Q86XK3 245 aa14.32□□□□□ -0.12
USP40-214ENST00000483519 UHMK1Q8TAS1 419 aaKnown RBP14.32□□□□□ -0.12
USP40-214ENST00000483519 STK33Q9BYT3 514 aa14.32□□□□□ -0.12
USP40-214ENST00000483519 RXFP1Q9HBX9 757 aa14.32□□□□□ -0.12
USP40-214ENST00000483519 SPATS2LQ9NUQ6 558 aaKnown RBP14.32□□□□□ -0.12
USP40-214ENST00000483519 IGSF9BQ9UPX0 1349 aa14.32□□□□□ -0.12
USP40-214ENST00000483519 GJB6O95452 261 aa14.31□□□□□ -0.12
USP40-214ENST00000483519 KRT16P08779 473 aa14.31□□□□□ -0.12
USP40-214ENST00000483519 GIT2Q14161 759 aa14.31□□□□□ -0.12
USP40-214ENST00000483519 C11orf91Q3C1V1 193 aa14.31□□□□□ -0.12
USP40-214ENST00000483519 TPTE2Q6XPS3 522 aa14.31□□□□□ -0.12
USP40-214ENST00000483519 SPATA21Q7Z572 469 aa14.31□□□□□ -0.12
USP40-214ENST00000483519 TXNRD3Q86VQ6 643 aa14.31□□□□□ -0.12
USP40-214ENST00000483519 RHOT2Q8IXI1 618 aa14.31□□□□□ -0.12
USP40-214ENST00000483519 MICAL1Q8TDZ2 1067 aa14.31□□□□□ -0.12
USP40-214ENST00000483519 ALG3Q92685 438 aa14.31□□□□□ -0.12
USP40-214ENST00000483519 TRIM7Q9C029 511 aa14.31□□□□□ -0.12
USP40-214ENST00000483519 CORO1CQ9ULV4 474 aaPredicted RBP14.31□□□□□ -0.12
USP40-214ENST00000483519 TNRC6CQ9HCJ0 1690 aaKnown RBP14.31□□□□□ -0.12
USP40-214ENST00000483519 ANKRD62A6NC57 917 aa14.31□□□□□ -0.12
USP40-214ENST00000483519 SERPINB2P05120 415 aa14.31□□□□□ -0.12
USP40-214ENST00000483519 BMT2Q1RMZ1 405 aa14.31□□□□□ -0.12
USP40-214ENST00000483519 NUGGCQ68CJ6 796 aa14.31□□□□□ -0.12
USP40-214ENST00000483519 CDCA2Q69YH5 1023 aaPredicted RBP14.31□□□□□ -0.12
USP40-214ENST00000483519 EXOC3L1Q86VI1 746 aa14.31□□□□□ -0.12
USP40-214ENST00000483519 OLIG1Q8TAK6 271 aa14.31□□□□□ -0.12
USP40-214ENST00000483519 SAAL1Q96ER3 474 aa14.31□□□□□ -0.12
USP40-214ENST00000483519 GGT7Q9UJ14 662 aa14.31□□□□□ -0.12
USP40-214ENST00000483519 STK38LQ9Y2H1 464 aa14.31□□□□□ -0.12
USP40-214ENST00000483519 ASTN1O14525 1302 aa14.3□□□□□ -0.12
USP40-214ENST00000483519 POTEFA5A3E0 1075 aa14.3□□□□□ -0.12
USP40-214ENST00000483519 POLRMTO00411 1230 aaKnown RBP14.3□□□□□ -0.12
USP40-214ENST00000483519 MED24O75448 989 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms