RNA–Protein interactions for RNA: ENST00000480744.2

LIMS3-203, Transcript of LIM zinc finger domain containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS3, Length 1,197 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-203ENST00000480744 CYP4A11Q02928 519 aa17.05■□□□□ 0.32
LIMS3-203ENST00000480744 CTTNQ14247 550 aaKnown RBP17.05■□□□□ 0.32
LIMS3-203ENST00000480744 EPHA7Q15375 998 aa17.05■□□□□ 0.32
LIMS3-203ENST00000480744 ME3Q16798 604 aa17.05■□□□□ 0.32
LIMS3-203ENST00000480744 SLFN12Q8IYM2 578 aa17.05■□□□□ 0.32
LIMS3-203ENST00000480744 GTF3C6Q969F1 213 aa17.05■□□□□ 0.32
LIMS3-203ENST00000480744 DYDC2Q96IM9 177 aa17.05■□□□□ 0.32
LIMS3-203ENST00000480744 FAM105AQ9NUU6 356 aa17.05■□□□□ 0.32
LIMS3-203ENST00000480744 FDPSP14324 419 aaKnown RBP17.04■□□□□ 0.32
LIMS3-203ENST00000480744 YWHABP31946 246 aaKnown RBP17.04■□□□□ 0.32
LIMS3-203ENST00000480744 RFC5P40937 340 aa17.04■□□□□ 0.32
LIMS3-203ENST00000480744 RAB27AP51159 221 aa17.04■□□□□ 0.32
LIMS3-203ENST00000480744 SMC1AQ14683 1233 aaKnown RBP17.04■□□□□ 0.32
LIMS3-203ENST00000480744 EMC2Q15006 297 aa17.04■□□□□ 0.32
LIMS3-203ENST00000480744 XKR9Q5GH70 373 aa17.04■□□□□ 0.32
LIMS3-203ENST00000480744 GLB1LQ6UWU2 654 aa17.04■□□□□ 0.32
LIMS3-203ENST00000480744 OTUD6AQ7L8S5 288 aa17.04■□□□□ 0.32
LIMS3-203ENST00000480744 TPH2Q8IWU9 490 aa17.04■□□□□ 0.32
LIMS3-203ENST00000480744 EXOC8Q8IYI6 725 aa17.04■□□□□ 0.32
LIMS3-203ENST00000480744 PRPF31Q8WWY3 499 aaKnown RBP17.04■□□□□ 0.32
LIMS3-203ENST00000480744 PSPC1Q8WXF1 523 aaKnown RBP17.04■□□□□ 0.32
LIMS3-203ENST00000480744 TMEM169Q96HH4 297 aa17.04■□□□□ 0.32
LIMS3-203ENST00000480744 RPGRIP1Q96KN7 1286 aa17.04■□□□□ 0.32
LIMS3-203ENST00000480744 GBP3Q9H0R5 595 aa17.04■□□□□ 0.32
LIMS3-203ENST00000480744 DHX33Q9H6R0 707 aaKnown RBP17.04■□□□□ 0.32
LIMS3-203ENST00000480744 MEIS3P2A8K0S8 358 aa17.03■□□□□ 0.32
LIMS3-203ENST00000480744 NEK4P51957 841 aa17.03■□□□□ 0.32
LIMS3-203ENST00000480744 RNASELQ05823 741 aaKnown RBP17.03■□□□□ 0.32
LIMS3-203ENST00000480744 LAMTOR4Q0VGL1 99 aa17.03■□□□□ 0.32
LIMS3-203ENST00000480744 HERC4Q5GLZ8 1057 aaPredicted RBP17.03■□□□□ 0.32
LIMS3-203ENST00000480744 NOMO2Q5JPE7 1267 aa17.03■□□□□ 0.32
LIMS3-203ENST00000480744 ANKRD54Q6NXT1 300 aa17.03■□□□□ 0.32
LIMS3-203ENST00000480744 C4orf19Q8IY42 314 aa17.03■□□□□ 0.32
LIMS3-203ENST00000480744 TRAIPQ9BWF2 469 aa17.03■□□□□ 0.32
LIMS3-203ENST00000480744 PHF7Q9BWX1 381 aaPredicted RBP17.03■□□□□ 0.32
LIMS3-203ENST00000480744 ZSWIM4Q9H7M6 989 aa17.03■□□□□ 0.32
LIMS3-203ENST00000480744 IFT122Q9HBG6 1241 aa17.03■□□□□ 0.32
LIMS3-203ENST00000480744 AGPAT5Q9NUQ2 364 aa17.03■□□□□ 0.32
LIMS3-203ENST00000480744 ARIH1Q9Y4X5 557 aaPredicted RBP17.03■□□□□ 0.32
LIMS3-203ENST00000480744 PPME1Q9Y570 386 aa17.03■□□□□ 0.32
LIMS3-203ENST00000480744 LOC730098B7Z3J9 87 aa17.02■□□□□ 0.32
LIMS3-203ENST00000480744 ZBTB39O15060 712 aa17.02■□□□□ 0.32
LIMS3-203ENST00000480744 JAK2O60674 1132 aa17.02■□□□□ 0.32
LIMS3-203ENST00000480744 SPIRE1Q08AE8 756 aa17.02■□□□□ 0.32
LIMS3-203ENST00000480744 TRIM29Q14134 588 aa17.02■□□□□ 0.32
LIMS3-203ENST00000480744 BMS1Q14692 1282 aaKnown RBP17.02■□□□□ 0.32
LIMS3-203ENST00000480744 CALCRLQ16602 461 aa17.02■□□□□ 0.32
LIMS3-203ENST00000480744 SRGAP1Q7Z6B7 1085 aa17.02■□□□□ 0.32
LIMS3-203ENST00000480744 TMEM87AQ8NBN3 555 aa17.02■□□□□ 0.32
LIMS3-203ENST00000480744 NSUN7Q8NE18 718 aaKnown RBP17.02■□□□□ 0.32
LIMS3-203ENST00000480744 TCP11Q8WWU5 503 aa17.02■□□□□ 0.32
LIMS3-203ENST00000480744 TNFRSF25Q93038 417 aa17.02■□□□□ 0.32
LIMS3-203ENST00000480744 PGBD4Q96DM1 585 aa17.02■□□□□ 0.32
LIMS3-203ENST00000480744 TBC1D13Q9NVG8 400 aa17.02■□□□□ 0.32
LIMS3-203ENST00000480744 PCDHB2Q9Y5E7 798 aa17.02■□□□□ 0.32
LIMS3-203ENST00000480744 TDRD15B5MCY1 1934 aaKnown RBP17.02■□□□□ 0.31
LIMS3-203ENST00000480744 TECTAO75443 2155 aa17.01■□□□□ 0.31
LIMS3-203ENST00000480744 C2orf71A6NGG8 1288 aa17.01■□□□□ 0.31
LIMS3-203ENST00000480744 BTBD18B2RXH4 712 aa17.01■□□□□ 0.31
LIMS3-203ENST00000480744 OFD1O75665 1012 aa17.01■□□□□ 0.31
LIMS3-203ENST00000480744 CXCL14O95715 111 aa17.01■□□□□ 0.31
LIMS3-203ENST00000480744 KCNC3Q14003 757 aa17.01■□□□□ 0.31
LIMS3-203ENST00000480744 CBX2Q14781 532 aaPredicted RBP17.01■□□□□ 0.31
LIMS3-203ENST00000480744 SYCE2Q6PIF2 218 aa17.01■□□□□ 0.31
LIMS3-203ENST00000480744 TMEM184AQ6ZMB5 413 aa17.01■□□□□ 0.31
LIMS3-203ENST00000480744 TMEM173Q86WV6 379 aaPredicted RBP17.01■□□□□ 0.31
LIMS3-203ENST00000480744 DIS3L2Q8IYB7 885 aaKnown RBP17.01■□□□□ 0.31
LIMS3-203ENST00000480744 VPS52Q8N1B4 723 aa17.01■□□□□ 0.31
LIMS3-203ENST00000480744 MRPL43Q8N983 215 aaKnown RBP17.01■□□□□ 0.31
LIMS3-203ENST00000480744 RNF149Q8NC42 400 aa17.01■□□□□ 0.31
LIMS3-203ENST00000480744 URGCPQ8TCY9 931 aa17.01■□□□□ 0.31
LIMS3-203ENST00000480744 AUTS2Q8WXX7 1259 aa17.01■□□□□ 0.31
LIMS3-203ENST00000480744 SUSD6Q92537 303 aa17.01■□□□□ 0.31
LIMS3-203ENST00000480744 CASP10Q92851 521 aa17.01■□□□□ 0.31
LIMS3-203ENST00000480744 CCDC43Q96MW1 224 aaKnown RBP17.01■□□□□ 0.31
LIMS3-203ENST00000480744 MTRQ99707 1265 aa17.01■□□□□ 0.31
LIMS3-203ENST00000480744 EIF2AK1Q9BQI3 630 aaKnown RBP17.01■□□□□ 0.31
LIMS3-203ENST00000480744 NRDE2Q9H7Z3 1164 aa17.01■□□□□ 0.31
LIMS3-203ENST00000480744 MINDY3Q9H8M7 445 aa17.01■□□□□ 0.31
LIMS3-203ENST00000480744 PCDHA12Q9UN75 941 aa17.01■□□□□ 0.31
LIMS3-203ENST00000480744 MUC6Q6W4X9 2439 aa17.01■□□□□ 0.31
LIMS3-203ENST00000480744 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17■□□□□ 0.31
LIMS3-203ENST00000480744 GAS2O43903 313 aaKnown RBP17■□□□□ 0.31
LIMS3-203ENST00000480744 ZNF623O75123 536 aa17■□□□□ 0.31
LIMS3-203ENST00000480744 SP100P23497 879 aaPredicted RBP17■□□□□ 0.31
LIMS3-203ENST00000480744 HFE2Q6ZVN8 426 aa17■□□□□ 0.31
LIMS3-203ENST00000480744 FERMT3Q86UX7 667 aa17■□□□□ 0.31
LIMS3-203ENST00000480744 RSPH1Q8WYR4 309 aa17■□□□□ 0.31
LIMS3-203ENST00000480744 EDAQ92838 391 aa17■□□□□ 0.31
LIMS3-203ENST00000480744 S1PR5Q9H228 398 aa17■□□□□ 0.31
LIMS3-203ENST00000480744 TTC12Q9H892 705 aaPredicted RBP17■□□□□ 0.31
LIMS3-203ENST00000480744 DNAJB4Q9UDY4 337 aa17■□□□□ 0.31
LIMS3-203ENST00000480744 HCFC2Q9Y5Z7 792 aa17■□□□□ 0.31
LIMS3-203ENST00000480744 TRIOO75962 3097 aa16.99■□□□□ 0.31
LIMS3-203ENST00000480744 ASAP2O43150 1006 aa16.99■□□□□ 0.31
LIMS3-203ENST00000480744 NEMFO60524 1076 aa16.99■□□□□ 0.31
LIMS3-203ENST00000480744 CLASP2O75122 1294 aaKnown RBP16.99■□□□□ 0.31
LIMS3-203ENST00000480744 ERLIN2O94905 339 aa16.99■□□□□ 0.31
LIMS3-203ENST00000480744 SLITRK3O94933 977 aa16.99■□□□□ 0.31
LIMS3-203ENST00000480744 GALTP07902 379 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms